Clone Sequence Records
BO14763.3prime Sequence
865 bp (687 high quality bases) assembled on 2006-06-02
> BO14763.3prime
ATGGTCTAGAAAGCTTGCGTCTCGATCCTCTTCTGACTGGCGTATTAGTA
CCTCTGCGGCCAGCTGCTCGTCCTTGTCGCAGGCCAGATAGGCCTGAACG
GCCATCACACGTTCGAAACCCAGTGCCTCCAAACGCCCTACGGCGGCGGT
TTCTTCGGCGGTTAAAGTAATCTGTAAATGTTCAATCTCGTTCGGGGTGC
GACTTGCGCCGCCTGAAATCATGTTCATTAACTCCTCCTGGTTACGCTGA
AAGACTTCGAAGGTAGCCGGATCGGTTTCAGCCAGTCTGTTCATTAGTCT
GTGTATTAGTTCTGGATTCTGATTAATCATCTCACGCATCCGTGTAATGT
TAAGATCTGCCATTAATTGCTGCAATTGATCACTTGTCTGTACGCTCGGG
ATTGCAGCTAATCCCTGCTCTGAAACAACCTCCTGAGGAATCCCATTAAT
CAAATACTCTATAGCCCTTTCCGGATGATTAAAGCTCGCCCGGAGGGCTG
AGCGTACCTCCTCTTCGCCATATCCCATTGACATGAGATCGCTCACCCAC
TGATCATTGGGAGCTAGTGAAGGCACCACATCCTCTGTGCGCAAAACATT
TGGGCCAGCGGCCAACGGTGGTGTCGGGGCAACCTTCTCCTCTGGCGAGC
TCTTATCAACCTTCTTCTTACCCATCAACACAATGATCTTGTCCTCGGCT
ATACGATATTCACTGAGGGGCATGGCATCCTCCATAATGCGGCCACTGTA
TATCAGCTGAAGGTTCTCCGCGGGCATGGCGACTTCNGGTAAATTGCCCA
ATTTCTGCTTCAGAACCCTCACCTCCTGCGATTCGTTCATCTCCAAAGTG
ATGGGTGCGTGGGTC
BO14763.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-PA | 873 | CG10694-RA | 35..870 | 854..19 | 4136 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:27:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-RA | 968 | CG10694-RA | 83..928 | 865..19 | 4169 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:27:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24107483..24108318 | 854..19 | 4154 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 18:27:42 has no hits.
BO14763.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:28 Download gff for
BO14763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-PA | 25..873 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:18 Download gff for
BO14763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-PA | 25..873 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 18:58:24 Download gff for
BO14763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 83..931 | 15..865 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:11:48 Download gff for
BO14763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 83..931 | 15..865 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:11:48 Download gff for
BO14763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24107473..24108317 | 20..865 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 18:58:24 Download gff for
BO14763.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19933195..19934039 | 20..865 | 99 | <- | Minus |
BO14763.5prime Sequence
749 bp (653 high quality bases) assembled on 2006-06-02
> BO14763.5prime
GAAGTTATCAGTCGACATGAAGCTGTCTATACGCATGCTGGACCAACGCA
CCATCACTTTGGAGATGAACGAATCGCAGGAGGTGAGGGCTCTGAAGCAG
AAATTGGGCAATTTACCCGAAGTCGCCATGCCCGCGGAGAACCTTCAGCT
GATATACAGTGGCCGCATTATGGAGGATGCCATGCCCCTCAGTGAATATC
GTATAGCCGAGGACAAGATCATTGTGTTGATGGGTAAGAAGAAGGTTGAT
AAGAGCTCGCCAGAGGAGAAGGTTGCCCCGACACCACCGTTGGCCGCTGG
CCCAAATGTTTTGCGCACAGAGGATGTGGTGCCTTCACTAGCTCCCAATG
ATCAGTGGGTGAGCGATCTCATGTCAATGGGATATGGCGAAGAGGAGGTA
CGCTCAGCCCTCCGGGCGAGCTTTAATCATCCGGAAAGGGCTATAGAGTA
TTTGATTAATGGGATTCCTCAGGAGGTTGTTTCAGAGCAGGGATTAGCTG
CAATCCCGAGCGTACAGACAAGTGATCAATTGCAGCAATTAATGGCAGAT
CTTAACATTACACGGATGCGTGAGATGATTAATCAGAATCCAGAACTAAT
ACACAGACTAATGAACAGACTGGCTGAAACCGATCCGGCTACCTTCGAAG
TCTTTTCGCGTAACCAGGAGGAGTTAATGAACATGATTTCAGGCGGCGCA
AGTCGCACCCCGAACGAGATTGAACATTTACAGATTACTTTAACCGCCG
BO14763.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-PA | 873 | CG10694-RA | 1..733 | 17..749 | 3615 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:06:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-RA | 968 | CG10694-RA | 59..791 | 17..749 | 3635 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24107449..24108181 | 17..749 | 3635 | 99.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:06:45 has no hits.
BO14763.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:30 Download gff for
BO14763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-PA | 1..733 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:20 Download gff for
BO14763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-PA | 1..733 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:06:41 Download gff for
BO14763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 59..791 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:37:11 Download gff for
BO14763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 59..791 | 17..749 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:37:11 Download gff for
BO14763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24107449..24108181 | 17..749 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:06:41 Download gff for
BO14763.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19933171..19933903 | 17..749 | 99 | | Plus |
BO14763.complete Sequence
904 bp (904 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633241
> BO14763.complete
GAAGTTATCAGTCGACATGAAGCTGTCTATACGCATGCTGGACCAACGCA
CCATCACTTTGGAGATGAACGAATCGCAGGAGGTGAGGGCTCTGAAGCAG
AAATTGGGCAATTTACCCGAAGTCGCCATGCCCGCGGAGAACCTTCAGCT
GATATACAGTGGCCGCATTATGGAGGATGCCATGCCCCTCAGTGAATATC
GTATAGCCGAGGACAAGATCATTGTGTTGATGGGTAAGAAGAAGGTTGAT
AAGAGCTCGCCAGAGGAGAAGGTTGCCCCGACACCACCGTTGGCCGCTGG
CCCAAATGTTTTGCGCACAGAGGATGTGGTGCCTTCACTAGCTCCCAATG
ATCAGTGGGTGAGCGATCTCATGTCAATGGGATATGGCGAAGAGGAGGTA
CGCTCAGCCCTCCGGGCGAGCTTTAATCATCCGGAAAGGGCTATAGAGTA
TTTGATTAATGGGATTCCTCAGGAGGTTGTTTCAGAGCAGGGATTAGCTG
CAATCCCGAGCGTACAGACAAGTGATCAATTGCAGCAATTAATGGCAGAT
CTTAACATTACACGGATGCGTGAGATGATTAATCAGAATCCAGAACTAAT
ACACAGACTAATGAACAGACTGGCTGAAACCGATCCGGCTACCTTCGAAG
TCTTTCAGCGTAACCAGGAGGAGTTAATGAACATGATTTCAGGCGGCGCA
AGTCGCACCCCGAACGAGATTGAACATTTACAGATTACTTTAACCGCCGA
AGAAACCGCCGCCGTAGGGCGTTTGGAGGCACTGGGTTTCGAACGTGTGA
TGGCCGTTCAGGCCTATCTGGCCTGCGACAAGGACGAGCAGCTGGCCGCA
GAGGTACTAATACGCCAGTCAGAAGAGGATCGAGACGCAAGCTTTCTAGA
CCAT
BO14763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:49:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-RA | 873 | CG10694-PA | 1..870 | 17..886 | 4350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-RA | 968 | CG10694-RA | 59..928 | 17..886 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24107449..24108318 | 17..886 | 4350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:49:30 has no hits.
BO14763.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:16:15 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 1..873 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:34:36 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 59..931 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:36 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 59..928 | 17..888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:16:15 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 59..931 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:00 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10694-RA | 59..928 | 17..888 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:00 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24107449..24108318 | 17..888 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:36 Download gff for
BO14763.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19933171..19934040 | 17..888 | 99 | | Plus |
BO14763.pep Sequence
Translation from 16 to 904
> BO14763.pep
MKLSIRMLDQRTITLEMNESQEVRALKQKLGNLPEVAMPAENLQLIYSGR
IMEDAMPLSEYRIAEDKIIVLMGKKKVDKSSPEEKVAPTPPLAAGPNVLR
TEDVVPSLAPNDQWVSDLMSMGYGEEEVRSALRASFNHPERAIEYLINGI
PQEVVSEQGLAAIPSVQTSDQLQQLMADLNITRMREMINQNPELIHRLMN
RLAETDPATFEVFQRNQEELMNMISGGASRTPNEIEHLQITLTAEETAAV
GRLEALGFERVMAVQAYLACDKDEQLAAEVLIRQSEEDRDASFLDH
BO14763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10694-PA | 290 | CG10694-PA | 1..290 | 1..290 | 1444 | 100 | Plus |
Rad23-PC | 414 | CG1836-PC | 1..414 | 1..288 | 293 | 24.9 | Plus |
Rad23-PA | 414 | CG1836-PA | 1..414 | 1..288 | 293 | 24.9 | Plus |
Rad23-PB | 343 | CG1836-PB | 89..343 | 112..288 | 248 | 27.8 | Plus |