Clone Sequence Records
BO14764.5prime Sequence
703 bp (622 high quality bases) assembled on 2006-06-02
> BO14764.5prime
GAAGTTATCAGTCGACATGAGCGATAATGAGGATGGTGAGGAGCGGAAGG
CATCGACCTTCGAGTCGATTATAGACAACATGTTCAGCCGGTTGCGGATC
ATCGCAGTGGACGTGGAGAAATTACAGAAGGCCAAGGAGAAGTTAAATAT
TATGCAACGGCGGAACACCTTCTACCATCTTCTAGGCCAGGAGGAAGAAG
TCAGCATGAACCGTGGAAGCGAGATGGCGATTCTTCGATCCAAGTATTCC
TTACATTCGGGTTTCAATCAGAATTGCAGCTCGGCCTCGGAGGAGGAACT
CGACTTCGAGGAGTTAAGCGAGGATCCGTGCAACATATCTTTCGAGGAGG
ATCGCTGGCACGGTTTCTTCAAAGACTTTCAGATCCTGACCACCCCAGTC
GGCACCGATCCCAACGAGAACCGCAAGTGTGTGGAACTGACTTCGATGAC
GAACTGCGATCTCGAGATCAAACACCATCTATTGGGCGGAGTCCGCTGCT
TTATGGTCAACCTTTTCGAGGGCACTCAGCATGACAACCAGAGCCTGATC
GTAAAGCTGCGAGAGGCGGAGATCAGTGTTTCAAAGGAGTTGGGTTTTCC
CGTGACGTCTTCAGTGATGGTGAAGATATCGCCGCGCCACCAGTTCACTG
GCGGATTCAGCACTCAGTTCCGCCAGGAGGGCAAGAAGTGCGTTGAACTT
GTG
BO14764.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-PA | 1929 | CG11249-RA | 1..687 | 17..703 | 3410 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:33:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 2110 | CG11249-RA | 53..739 | 17..703 | 3420 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21672191..21672656 | 17..482 | 2315 | 99.8 | Plus |
| 3L | 28110227 | 3L | 21672927..21673147 | 483..703 | 1105 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 10:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5214..5265 | 281..233 | 117 | 75 | Minus |
BO14764.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:35:30 Download gff for
BO14764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:21 Download gff for
BO14764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-PA | 1..687 | 17..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:09:36 Download gff for
BO14764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..739 | 9..703 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:33:35 Download gff for
BO14764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..739 | 9..703 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:33:35 Download gff for
BO14764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21672186..21672656 | 9..482 | 99 | -> | Plus |
| 3L | 21672927..21673147 | 483..703 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:09:36 Download gff for
BO14764.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21665286..21665756 | 9..482 | 99 | -> | Plus |
| arm_3L | 21666027..21666247 | 483..703 | 100 | | Plus |
BO14764.complete Sequence
1960 bp (1960 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ638733
> BO14764.complete
GAAGTTATCAGTCGACATGAGCGATAATGAGGATGGTGAGGAGCGGAAGG
CATCGACCTTCGAGTCGATTATAGACAACATGTTCAGCCGGTTGCGGATC
ATCGCAGTGGACGTGGAGAAATTACAGAAGGCCAAGGAGAAGTTAAATAT
TATGCAACGGCGGAACACCTTCTACCATCTTCTAGGCCAGGAGGAAGAAG
TCAGCATGAACCGTGGAAGCGAGATGGCGATTCTTCGATCCAAGTATTCC
TTACATTCGGGTTTCAATCAGAATTGCAGCTCGGCCTCGGAGGAGGAACT
CGACTTCGAGGAGTTAAGCGAGGATCCGTGCAACATATCTTTCGAGGAGG
ATCGCTGGCACGGTTTCTTCAAAGACTTTCAGATCCTGACCACCCCAGTC
GGCACCGATCCCAACGAGAACCGCAAGTGTGTGGAACTGACTTCGATGAC
GAACTGCGATCTCGAGATCAAACACCATCTATTGGGCGGAGTCCGCTGCT
TTATGGTCAACCTTTTCGAGGGCACTCAGCATGACAACCAGAGCCTGATC
GTAAAGCTGCGAGAGGCGGAGATCAGTGTTTCAAAGGAGTTGGGTTTTCC
CGTGACGTCTTCAGTGATGGTGAAGATATCGCCGCGCCACCAGTTCACTG
GCGGATTCAGCACTCAGTTCCGCCAGGAGGGCAAGAAGTGCGTTGAACTT
GTGCAGGGCCAGAAGGTAATCCTGACCGTGGATCGGCAGTACTCGGATCG
GAGCAACGCTGATGTTATATATGTGAATGCCCGCTTTTTGATCGTTGATG
TACACCCCTTGGACTTTATTCTGATTGGCGAGGACATTCAACTGATGGTG
CGGAGCATCCACGCGGACCACCTCAAGGGCTGTGTGGCCAGGGGAGGCAT
GCTGTATGCCCACATGCCTGTCTTATTCCCGGCGAGGTGTCGTCGTTTCC
GGATCTCGTACGAGGAGCTAGAGGACCTTACCTTCGCCCGAGAGGTTGGC
CTGAATGTGGTAGTATCCCATATCGTGGGGACCCCAAAGTACGTGGACAA
CTTGGAGCACGCGATGTCCGCTATGCACTGCGATGGCATGAGACTGTACG
CTAGAGTGGTGCTCAACGAGGTCCAGGGCTGCAAAGGGGAGCTGAACTGG
GCGATCAAACGCTACGACGGGTTCTTGGTGGAACTGGCGGAGCCGGCCAC
TGTTCCGGACATAATGCACCTGTGCCCCGACGCCGAGTGCTTTATGCAGT
TGACATACGCTGCGAAGAAACCCATTATCTTTGATCCGCGGCTTTTGGAT
GAGCAAAAGCTTAGGGTGGACCCCGCGCACTACTATTACACATTCTATTA
TCCGGACAAGTACGTGACCACGTGCCCGCAGCCGAAAGGTACAATCTACT
TCCGCTTACTGCAATCCGCCATCTTCGAGCAGATCAGCCCAACGGCACTG
GCCAATACTCCATACTGCGACCGATCTCACACTGGAGCGGATAGCTTGGC
GCGTTCCGTGGTAACTGCCTCCATTGAAGTCCATGCGGTGGCCATCGTCG
TGATCGGAGTCACCACGCGGATGGTGCAAAAGATCTCCCACTTTCGGCCC
CACGCCCCCATTCTCTTCGTTAGCCACATGCGCTCCGCCGAGGATTACGT
TTCCATTTACCACAACGTGACCATGCTTCCATTCCGCACCAAGTGCATTA
TTGCACATAGGCGGAACGTCTTCCTTAAGGCCATATACGCGTTGGCCTAT
TTGGTGAAGCGAAAGATCGCCAAGCAGAACGATCAGGTGATCCTGGTGTA
CAATTACGAGGATGGCACAAAGTTTCCTGAAAAGTACATCGTGTACAAGC
TGGACAGAACTAACTTTGCGTCGCACATGGCGGAAATCCTGTTCCCTGTG
GACCAGGACCAGATGCAGACCCTCAAGGAAATAGAAAAGACTGCAAGCTT
TCTAGACCAT
BO14764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 1929 | CG11249-PA | 1..1926 | 17..1942 | 9585 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:23:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-RA | 2110 | CG11249-RA | 53..1978 | 17..1942 | 9585 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:23:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21672927..21674386 | 483..1942 | 7270 | 99.9 | Plus |
| 3L | 28110227 | 3L | 21672191..21672656 | 17..482 | 2315 | 99.8 | Plus |
Blast to na_te.dros performed 2014-11-27 20:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 5214..5265 | 281..233 | 117 | 75 | Minus |
BO14764.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:52 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 1..1929 | 17..1943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:24 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..1983 | 9..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:10 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 53..1978 | 17..1944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:53 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 48..1983 | 9..1950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:20:25 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11249-RA | 53..1978 | 17..1944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:20:25 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21672191..21672656 | 17..482 | 99 | -> | Plus |
| 3L | 21672927..21674386 | 483..1944 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:10 Download gff for
BO14764.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21665291..21665756 | 17..482 | 99 | -> | Plus |
| arm_3L | 21666027..21667486 | 483..1944 | 99 | | Plus |
BO14764.pep Sequence
Translation from 16 to 1960
> BO14764.pep
MSDNEDGEERKASTFESIIDNMFSRLRIIAVDVEKLQKAKEKLNIMQRRN
TFYHLLGQEEEVSMNRGSEMAILRSKYSLHSGFNQNCSSASEEELDFEEL
SEDPCNISFEEDRWHGFFKDFQILTTPVGTDPNENRKCVELTSMTNCDLE
IKHHLLGGVRCFMVNLFEGTQHDNQSLIVKLREAEISVSKELGFPVTSSV
MVKISPRHQFTGGFSTQFRQEGKKCVELVQGQKVILTVDRQYSDRSNADV
IYVNARFLIVDVHPLDFILIGEDIQLMVRSIHADHLKGCVARGGMLYAHM
PVLFPARCRRFRISYEELEDLTFAREVGLNVVVSHIVGTPKYVDNLEHAM
SAMHCDGMRLYARVVLNEVQGCKGELNWAIKRYDGFLVELAEPATVPDIM
HLCPDAECFMQLTYAAKKPIIFDPRLLDEQKLRVDPAHYYYTFYYPDKYV
TTCPQPKGTIYFRLLQSAIFEQISPTALANTPYCDRSHTGADSLARSVVT
ASIEVHAVAIVVIGVTTRMVQKISHFRPHAPILFVSHMRSAEDYVSIYHN
VTMLPFRTKCIIAHRRNVFLKAIYALAYLVKRKIAKQNDQVILVYNYEDG
TKFPEKYIVYKLDRTNFASHMAEILFPVDQDQMQTLKEIEKTASFLDH
BO14764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11249-PA | 642 | CG11249-PA | 1..642 | 1..642 | 3350 | 100 | Plus |
