Clone BO14801 Report

Search the DGRC for BO14801

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:1
Vector:pDNR-Dual
Associated Gene/TranscriptMED11-RA
Protein status:BO14801.pep: Imported from assembly
Sequenced Size:562

Clone Sequence Records

BO14801.5prime Sequence

560 bp (560 high quality bases) assembled on 2006-06-16

> BO14801.5prime
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACGCAAGC
TTTCTAGACC

BO14801.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:12:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6884-PA 531 MED11-RA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:23
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 713 CG6884-RA 48..575 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18746028..18746485 87..544 2290 100 Plus
3L 28110227 3L 18745903..18745976 17..90 370 100 Plus
Blast to na_te.dros performed on 2015-02-10 16:31:19 has no hits.

BO14801.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:39 Download gff for BO14801.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6884-PA 1..531 17..548 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 16:50:42 Download gff for BO14801.5prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 10..552 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:09 Download gff for BO14801.5prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 10..552 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:09 Download gff for BO14801.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18745899..18745975 10..89 96 -> Plus
3L 18746031..18746492 90..552 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 16:50:42 Download gff for BO14801.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18738999..18739075 10..89 96 -> Plus
arm_3L 18739131..18739592 90..552 99   Plus

BO14801.3prime Sequence

560 bp (560 high quality bases) assembled on 2006-06-16

> BO14801.3prime
ATGGTCTAGAAAGCTTGCGTTGGTTGACATTGAGGAGTCTCCGCCCATGG
GATGATCTCCGCTGCCGGCATTTCCTCCTCCGGTTTGTTGTTGCTGCTGT
TGTGCCGCCTGTTGCATCTGTTGTTGTTGCTGCTGCTGCTGTTGTTGTTG
CTGCTGCTGTTGCTGGGCGGCGGCATGTTCCTGCTGACGCTTCAACTGCT
GACGAGCTGCATGTGAGTGTTTGGCCTTAGTTTCCTCAAGTTCACGCACT
CTGGACCTAGCGTGCTGAATGCGATGCCAAGCCATTTGGAGCACTTTGGC
GGATGCATAGCCGGAACCCTCGTGTGGCTGACCCGTGGACACCTGGGTCA
AGTAGTTGATCTGCTCGGACAGCTTCGATTCCACGCTGGACAGACTCTTG
AGAAACTGCTGCGACTGGGTCTCCGCATTTTTCTGGGAAGACTTTTCCTT
GCCCAACTCCTGCAAGGCTTGTCCTGCACTTTGCATGCACAGGATTATCT
CCTTTTCGATCTCATCTAGAGCGTGTATTTTGTCCAGAGGATTCATGTCG
ACTGATAACT

BO14801.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG6884-PA 531 MED11-RA 1..528 546..19 2640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 713 CG6884-RA 48..575 546..19 2640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18746028..18746485 476..19 2290 100 Minus
3L 28110227 3L 18745903..18745976 546..473 370 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:47:02 has no hits.

BO14801.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:04 Download gff for BO14801.3prime
Subject Subject Range Query Range Percent Splice Strand
MED11-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:04 Download gff for BO14801.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6884-PA 1..531 15..546 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:32 Download gff for BO14801.3prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 11..553 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:22 Download gff for BO14801.3prime
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 44..582 11..553 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:22 Download gff for BO14801.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18745899..18745975 474..553 96 -> Minus
3L 18746031..18746492 11..473 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:32 Download gff for BO14801.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18738999..18739075 474..553 96 -> Minus
arm_3L 18739131..18739592 11..473 99   Minus

BO14801.complete Sequence

562 bp assembled on 2008-08-15

GenBank Submission: FJ633246

> BO14801.complete
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACGCAAGC
TTTCTAGACCAT

BO14801.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 531 CG6884-PA 1..528 17..544 2640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-RA 713 CG6884-RA 48..575 17..544 2640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18746028..18746485 87..544 2290 100 Plus
3L 28110227 3L 18745903..18745976 17..90 370 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:29:28 has no hits.

BO14801.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:04 Download gff for BO14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 1..536 17..552 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:50:37 Download gff for BO14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 48..575 17..546 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:23 Download gff for BO14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 2..529 17..546 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:36 Download gff for BO14801.complete
Subject Subject Range Query Range Percent Splice Strand
MED11-RA 48..575 17..546 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:36 Download gff for BO14801.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18745903..18745975 17..89 100 -> Plus
3L 18746031..18746485 90..546 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:50:37 Download gff for BO14801.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18739003..18739075 17..89 100 -> Plus
arm_3L 18739131..18739585 90..546 99   Plus

BO14801.pep Sequence

Translation from 16 to 562

> BO14801.pep
MNPLDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLK
SLSSVESKLSEQINYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRV
RELEETKAKHSHAARQQLKRQQEHAAAQQQQQQQQQQQQQQQQMQQAAQQ
QQQQTGGGNAGSGDHPMGGDSSMSTNASFLDH

BO14801.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
MED11-PA 176 CG6884-PA 1..176 1..176 889 100 Plus
btd-PA 644 CG12653-PA 18..116 83..178 157 44 Plus
Smr-PF 3601 CG4013-PF 133..272 22..178 154 30.4 Plus
Smr-PE 3601 CG4013-PE 133..272 22..178 154 30.4 Plus
Smr-PD 3601 CG4013-PD 133..272 22..178 154 30.4 Plus