Clone Sequence Records
BO14801.5prime Sequence
560 bp (560 high quality bases) assembled on 2006-06-16
> BO14801.5prime
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACGCAAGC
TTTCTAGACC
BO14801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:12:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6884-PA | 531 | MED11-RA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:31:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 713 | CG6884-RA | 48..575 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18746028..18746485 | 87..544 | 2290 | 100 | Plus |
3L | 28110227 | 3L | 18745903..18745976 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:31:19 has no hits.
BO14801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:39 Download gff for
BO14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6884-PA | 1..531 | 17..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 16:50:42 Download gff for
BO14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 10..552 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:57:09 Download gff for
BO14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 10..552 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:57:09 Download gff for
BO14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18745899..18745975 | 10..89 | 96 | -> | Plus |
3L | 18746031..18746492 | 90..552 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 16:50:42 Download gff for
BO14801.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18738999..18739075 | 10..89 | 96 | -> | Plus |
arm_3L | 18739131..18739592 | 90..552 | 99 | | Plus |
BO14801.3prime Sequence
560 bp (560 high quality bases) assembled on 2006-06-16
> BO14801.3prime
ATGGTCTAGAAAGCTTGCGTTGGTTGACATTGAGGAGTCTCCGCCCATGG
GATGATCTCCGCTGCCGGCATTTCCTCCTCCGGTTTGTTGTTGCTGCTGT
TGTGCCGCCTGTTGCATCTGTTGTTGTTGCTGCTGCTGCTGTTGTTGTTG
CTGCTGCTGTTGCTGGGCGGCGGCATGTTCCTGCTGACGCTTCAACTGCT
GACGAGCTGCATGTGAGTGTTTGGCCTTAGTTTCCTCAAGTTCACGCACT
CTGGACCTAGCGTGCTGAATGCGATGCCAAGCCATTTGGAGCACTTTGGC
GGATGCATAGCCGGAACCCTCGTGTGGCTGACCCGTGGACACCTGGGTCA
AGTAGTTGATCTGCTCGGACAGCTTCGATTCCACGCTGGACAGACTCTTG
AGAAACTGCTGCGACTGGGTCTCCGCATTTTTCTGGGAAGACTTTTCCTT
GCCCAACTCCTGCAAGGCTTGTCCTGCACTTTGCATGCACAGGATTATCT
CCTTTTCGATCTCATCTAGAGCGTGTATTTTGTCCAGAGGATTCATGTCG
ACTGATAACT
BO14801.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6884-PA | 531 | MED11-RA | 1..528 | 546..19 | 2640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:47:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 713 | CG6884-RA | 48..575 | 546..19 | 2640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:47:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18746028..18746485 | 476..19 | 2290 | 100 | Minus |
3L | 28110227 | 3L | 18745903..18745976 | 546..473 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:47:02 has no hits.
BO14801.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:04 Download gff for
BO14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:04 Download gff for
BO14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6884-PA | 1..531 | 15..546 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 04:52:32 Download gff for
BO14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 11..553 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:06:22 Download gff for
BO14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 44..582 | 11..553 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:06:22 Download gff for
BO14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18745899..18745975 | 474..553 | 96 | -> | Minus |
3L | 18746031..18746492 | 11..473 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 04:52:32 Download gff for
BO14801.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18738999..18739075 | 474..553 | 96 | -> | Minus |
arm_3L | 18739131..18739592 | 11..473 | 99 | | Minus |
BO14801.complete Sequence
562 bp assembled on 2008-08-15
GenBank Submission: FJ633246
> BO14801.complete
GAAGTTATCAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATG
AGATCGAAAAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTG
CAGGAGTTGGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTC
GCAGCAGTTTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGC
AGATCAACTACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCC
GGCTATGCATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCA
CGCTAGGTCCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCAC
ATGCAGCTCGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAG
CAACAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCA
ACAGGCGGCACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCA
GCGGAGATCATCCCATGGGCGGAGACTCCTCAATGTCAACCAACGCAAGC
TTTCTAGACCAT
BO14801.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 531 | CG6884-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-RA | 713 | CG6884-RA | 48..575 | 17..544 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18746028..18746485 | 87..544 | 2290 | 100 | Plus |
3L | 28110227 | 3L | 18745903..18745976 | 17..90 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:29:28 has no hits.
BO14801.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:04 Download gff for
BO14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 1..536 | 17..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:50:37 Download gff for
BO14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 48..575 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:59:23 Download gff for
BO14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 2..529 | 17..546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:19:36 Download gff for
BO14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MED11-RA | 48..575 | 17..546 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:19:36 Download gff for
BO14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18745903..18745975 | 17..89 | 100 | -> | Plus |
3L | 18746031..18746485 | 90..546 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:50:37 Download gff for
BO14801.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18739003..18739075 | 17..89 | 100 | -> | Plus |
arm_3L | 18739131..18739585 | 90..546 | 99 | | Plus |
BO14801.pep Sequence
Translation from 16 to 562
> BO14801.pep
MNPLDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLK
SLSSVESKLSEQINYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRV
RELEETKAKHSHAARQQLKRQQEHAAAQQQQQQQQQQQQQQQQMQQAAQQ
QQQQTGGGNAGSGDHPMGGDSSMSTNASFLDH
BO14801.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MED11-PA | 176 | CG6884-PA | 1..176 | 1..176 | 889 | 100 | Plus |
btd-PA | 644 | CG12653-PA | 18..116 | 83..178 | 157 | 44 | Plus |
Smr-PF | 3601 | CG4013-PF | 133..272 | 22..178 | 154 | 30.4 | Plus |
Smr-PE | 3601 | CG4013-PE | 133..272 | 22..178 | 154 | 30.4 | Plus |
Smr-PD | 3601 | CG4013-PD | 133..272 | 22..178 | 154 | 30.4 | Plus |