Clone Sequence Records
BO14803.3prime Sequence
862 bp (827 high quality bases) assembled on 2006-06-16
> BO14803.3prime
ATGGTCTAGAAAGCTTGCTACAAATGAGCCCAGTAGTCGCTTCAAAATTG
ACCACAATATTAGGGCAGCACCGCCACAAAGAGTGAACTGCAGCAGCCGA
TGAAGAAATTCAAACCTTTTATAGATCTTTCGTCCCCTTTCCACTACCTC
CTGTCCTGGTTCCTCCTTGGCGAGATAGATGCGAACTCCGGCCAGTGCCT
GTAGGAAGTAATCATCCCAGTCGACGCTGCTCATATTAAAATCGTAAAGC
TTTTGATCCTCGACAGACATTTTGGCCCACAACTTGCGGGTGTTGACGGT
ATCGAACGACCAGGATGTGATCACAAAGGGTGCCAGAATATCAATGTTCT
TGTGGATCTTGTCGTACAACTTGATCATACGTGGCTTTTTGCCCCATAAA
CGCAAGGCCAGATCAATGGCATAGCCGGGGAGCAGGTGATAAAAGATGGC
CGTGAACCGGAATAGCCAGGGAATGGTGGTGCAATGCAGAAACGGCAACC
ACATCATCTTGGTCAGTGGATACGTGTACCGCAGCCTCGCCGCCTTGTCC
CGAAATCCACCCCAGGTTATCAGGTTATCATTATTTGGCGTAAAATTGTA
GATAGGTGGCTCCGGCGATAGCTTGATACTTGTATCCCGGGCCGTGTTCC
AAGCGCAGGTCAGCACCATATTGACGCAGTAATCCACGGGTACAATTCCA
GCCTGGGCCTTAAGATTAAGCAGTGTGATATGCAGTATTCCGAAGGCTGC
TCCGTAGAGAACTGCAATGGGTCCGTACAGGTTGTCGATCCAGCCGGGCA
TGGGCTCCTTATAGCTGGCAATTATGACACCCGGACGAAAAATGCTAAGC
GGCAAATCTTTC
BO14803.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PA | 1356 | CG10096-RA | 510..1353 | 862..19 | 4220 | 100 | Minus |
| CG10096-PB | 1509 | CG10096-RB | 663..1506 | 862..19 | 4220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10097-RC | 4716 | CG10097-RC | 3647..4490 | 862..19 | 4220 | 100 | Minus |
| CG10097-RD | 5233 | CG10097-RD | 3647..4490 | 862..19 | 4220 | 100 | Minus |
| CG10096-RD | 2358 | CG10096-RD | 772..1615 | 862..19 | 4220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 114..824 | 3555 | 100 | Plus |
| 3R | 32079331 | 3R | 12390909..12391007 | 19..117 | 495 | 100 | Plus |
| 3R | 32079331 | 3R | 12391848..12391885 | 825..862 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 15:49:03 has no hits.
BO14803.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:07 Download gff for
BO14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 663..1509 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:08 Download gff for
BO14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-PB | 663..1509 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:48 Download gff for
BO14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RA | 3867..4713 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:36 Download gff for
BO14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RD | 772..1618 | 15..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:36 Download gff for
BO14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390906..12391005 | 15..115 | 98 | <- | Plus |
| 3R | 12391084..12391792 | 116..824 | 100 | <- | Plus |
| 3R | 12391848..12391885 | 825..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:48 Download gff for
BO14803.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216628..8216727 | 15..115 | 98 | <- | Plus |
| arm_3R | 8216806..8217514 | 116..824 | 100 | <- | Plus |
| arm_3R | 8217570..8217607 | 825..862 | 100 | | Plus |
BO14803.complete Sequence
1540 bp assembled on 2011-06-28
GenBank Submission: KX794645
> BO14803.complete
GAAGTTATCAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACA
AAACTGTCTTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATT
GCGAAGCTGCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCG
TGCCAAACGCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGG
ATCCGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGC
GTGGTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAA
CAGCGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGG
CGGCCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAAC
ACCCGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTT
GGAGTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGC
ACGTAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAG
ATCCTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGC
ACCGGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTC
TGACGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATT
TTTCGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTG
GATCGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCG
GAATACTGCATATCACACTGCTTAATCTTAAGGCCCAGGCTGGAATTGTA
CCCGTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGC
CCGGGATACAAGTATCAAGCTATCGCCGGAGCCACCTATCTACAATTTTA
CGCCAAATAATGATAACCTGATAACCTGGGGTGGATTTCGGGACAAGGCG
GCGAGGCTGCGGTACACGTATCCACTGACCAAGATGATGTGGTTGCCGTT
TCTGCATTGCACCACCATTCCCTGGCTATTCCGGTTCACGGCCATCTTTT
ATCACCTGCTCCCCGGCTATGCCATTGATCTGGCCTTGCGTTTATGGGGC
AAAAAGCCACGTATGATCAAGTTGTACGACAAGATCCACAAGAACATTGA
TATTCTGGCACCCTTTGTGATCACATCCTGGTCGTTCGATACCGTCAACA
CCCGCAAGTTGTGGGCCAAAATGTCTGTCGAGGATCAAAAGCTTTACGAT
TTTAATATGAGCAGCGTCGACTGGGATGATTACTTCCTACAGGCACTGGC
CGGAGTTCGCATCTATCTCGCCAAGGAGGAACCAGGACAGGAGGTAGTGG
AAAGGGGACGAAAGATCTATAAAAGGTTTGAATTTCTTCATCGGCTGCTG
CAGTTCACTCTTTGTGGCGGTGCTGCCCTAATATTGTGGTCAATTTTGAA
GCGACTACTGGGCTCATTTGTAGCAAGCTTTCTAGACCAT
BO14803.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:09:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 1509 | CG10096-PD | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| CG10096-RB | 1509 | CG10096-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
| CG10096-RC | 1356 | CG10096-PC | 1..1353 | 170..1522 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:09:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-RD | 2358 | CG10096-RD | 110..1615 | 17..1522 | 7530 | 100 | Plus |
| CG10096-RB | 1841 | CG10096-RB | 110..1615 | 17..1522 | 7530 | 100 | Plus |
| CG10097-RC | 4716 | CG10097-RC | 3059..4490 | 91..1522 | 7160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:09:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12391082..12391792 | 1427..717 | 3555 | 100 | Minus |
| 3R | 32079331 | 3R | 12391848..12392359 | 716..205 | 2560 | 100 | Minus |
| 3R | 32079331 | 3R | 12392456..12392573 | 208..91 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 12390909..12391007 | 1522..1424 | 495 | 100 | Minus |
| 3R | 32079331 | 3R | 12392827..12392902 | 92..17 | 380 | 100 | Minus |
| 3R | 32079331 | 3R | 16618397..16618628 | 326..557 | 305 | 75.4 | Plus |
| 3R | 32079331 | 3R | 16615774..16615940 | 326..492 | 250 | 76.6 | Plus |
| 2L | 23513712 | 2L | 8520272..8520553 | 396..677 | 240 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:09:52 has no hits.
BO14803.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:13 Download gff for
BO14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1615 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:47 Download gff for
BO14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1615 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:37 Download gff for
BO14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10096-RB | 110..1615 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:37 Download gff for
BO14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12390907..12391005 | 1426..1524 | 97 | <- | Minus |
| 3R | 12391084..12391792 | 717..1425 | 100 | <- | Minus |
| 3R | 12391848..12392358 | 206..716 | 100 | <- | Minus |
| 3R | 12392459..12392571 | 93..205 | 100 | <- | Minus |
| 3R | 12392827..12392902 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:47 Download gff for
BO14803.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8216629..8216727 | 1426..1524 | 97 | <- | Minus |
| arm_3R | 8216806..8217514 | 717..1425 | 100 | <- | Minus |
| arm_3R | 8217570..8218080 | 206..716 | 100 | <- | Minus |
| arm_3R | 8218181..8218293 | 93..205 | 100 | <- | Minus |
| arm_3R | 8218549..8218624 | 17..92 | 100 | | Minus |
BO14803.pep Sequence
Translation from 16 to 1540
> BO14803.pep
MATDVQSFYKDKTVFLTGGSGFLGKVTIAKLLCTTEVKRIYVLLRAKRGQ
EMRERCAAWDKDPVFGNLMKTNPEALKRVVPCGGDCQEPDLGLSNSDRQV
LIDEVQIVIHTAATVRFVEPLHIALAVNTRATRLMIQLAKEMSHLESFVH
VSTAYSNCVVEHVSERFYPEHLTCPAEKILELLESISPELLDKMAPALMG
KYPNTYTYTKALTEQVIQKEAKDLPLSIFRPGVIIASYKEPMPGWIDNLY
GPIAVLYGAAFGILHITLLNLKAQAGIVPVDYCVNMVLTCAWNTARDTSI
KLSPEPPIYNFTPNNDNLITWGGFRDKAARLRYTYPLTKMMWLPFLHCTT
IPWLFRFTAIFYHLLPGYAIDLALRLWGKKPRMIKLYDKIHKNIDILAPF
VITSWSFDTVNTRKLWAKMSVEDQKLYDFNMSSVDWDDYFLQALAGVRIY
LAKEEPGQEVVERGRKIYKRFEFLHRLLQFTLCGGAALILWSILKRLLGS
FVASFLDH
BO14803.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10096-PD | 502 | CG10096-PD | 1..502 | 1..502 | 2647 | 100 | Plus |
| CG10096-PB | 502 | CG10096-PB | 1..502 | 1..502 | 2647 | 100 | Plus |
| CG10096-PC | 451 | CG10096-PC | 1..451 | 52..502 | 2392 | 100 | Plus |
| CG10096-PA | 451 | CG10096-PA | 1..451 | 52..502 | 2392 | 100 | Plus |
| CG17562-PA | 499 | CG17562-PA | 1..499 | 1..498 | 1481 | 56.5 | Plus |
