Clone Sequence Records
BO14808.3prime Sequence
437 bp (437 high quality bases) assembled on 2006-06-16
> BO14808.3prime
ATGGTCTAGAAAGCTTGCATCGAAGTAATTCATAAGCGTACACTGGACGC
TGGTACAGTCGGGCAGTGAAGTGAACAGCACGCAGGATAACTTATAATCG
TAGATGAACTCGCAAGTGGGGAAGCTGACGGTGAAGAACCAGGTGCACTT
GAAGTTGCACAATATGCCATAGGGCTTCTTCAGCTGCTCCTTTTTGTTGA
CCACAGTGTTCTGCAGATTGTAGCCATCGTAACGGCGCCAGCAATGGTTA
ATGTTACGGCGAATGTGGTGACTGCCGCCATGGTGATGAAAGTCCCGTCC
CTCCAGCTGACCCCCGTGCCCGTTGGTGGCCTCCACGCCTCTGACGCCCC
TGCCACCGAAAAGCAGGAGGTACCAGAGGACCAGGGAGCTGACGATGAAG
ATGTAAGTCACTAATTTGGCCATGTCGACTGATAACT
BO14808.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-PA | 408 | CG1537-RA | 1..405 | 423..19 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:48:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 869 | CG1537-RA | 329..733 | 423..19 | 2025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11062673..11062842 | 254..423 | 850 | 100 | Plus |
X | 23542271 | X | 11062331..11062463 | 125..257 | 665 | 100 | Plus |
X | 23542271 | X | 11062163..11062271 | 19..127 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 03:48:11 has no hits.
BO14808.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:11 Download gff for
BO14808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:14 Download gff for
BO14808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:07 Download gff for
BO14808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 12..426 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:13 Download gff for
BO14808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 12..426 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:13 Download gff for
BO14808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11062158..11062268 | 12..124 | 97 | <- | Plus |
X | 11062331..11062463 | 125..257 | 100 | <- | Plus |
X | 11062677..11062845 | 258..426 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:07 Download gff for
BO14808.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10956191..10956301 | 12..124 | 97 | <- | Plus |
arm_X | 10956364..10956496 | 125..257 | 100 | <- | Plus |
arm_X | 10956710..10956878 | 258..426 | 99 | | Plus |
BO14808.5prime Sequence
437 bp (436 high quality bases) assembled on 2006-06-16
> BO14808.5prime
GAAGTTATCAGTCGACATGGCCAAATTAGTGACTTACATCTTCATCGTCA
GCTCCCTGGTCCTCTGGTACCTCCTGCTTTTCGGTGGCAGGGGCGTCAGA
GGCGTGGAGGCCACCAACGGGCACGGGGGTCAGCTGGAGGGACGGGACTT
TCATCACCATGGCGGCAGTCACCACATTCGCCGTAACATTAACCATTGCT
GGCGCCGTTACGATGGCTACAATCTGCAGAACACTGTGGTCAACAAAAAG
GAGCAGCTGAAGAAGCCCTATGGCATATTGTGCAACTTCAAGTGCACCTG
GTTCTTCACCGTCAGCTTCCCCACTTGCGAGTTCATCTACGATTATAAGT
TATCCTGCGTGCTGTTCACTTCACTGCCCGACTGTACCAGCGTCCAGTGT
ACGCTTATGAATTACTTCGATGCAAGCTTTCTAGACC
BO14808.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-PA | 408 | CG1537-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:51:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 869 | CG1537-RA | 329..733 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11062673..11062842 | 186..17 | 850 | 100 | Minus |
X | 23542271 | X | 11062331..11062463 | 315..183 | 665 | 100 | Minus |
X | 23542271 | X | 11062163..11062271 | 421..313 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:51:05 has no hits.
BO14808.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:12 Download gff for
BO14808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:15 Download gff for
BO14808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:53 Download gff for
BO14808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 14..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:24 Download gff for
BO14808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 326..738 | 14..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:24 Download gff for
BO14808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11062158..11062268 | 316..428 | 97 | <- | Minus |
X | 11062331..11062463 | 183..315 | 100 | <- | Minus |
X | 11062677..11062845 | 14..182 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:53 Download gff for
BO14808.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10956191..10956301 | 316..428 | 97 | <- | Minus |
arm_X | 10956364..10956496 | 183..315 | 100 | <- | Minus |
arm_X | 10956710..10956878 | 14..182 | 99 | | Minus |
BO14808.complete Sequence
439 bp (439 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633249
> BO14808.complete
GAAGTTATCAGTCGACATGGCCAAATTAGTGACTTACATCTTCATCGTCA
GCTCCCTGGTCCTCTGGTACCTCCTGCTTTTCGGTGGCAGGGGCGTCAGA
GGCGTGGAGGCCACCAACGGGCACGGGGGTCAGCTGGAGGGACGGGACTT
TCATCACCATGGCGGCAGTCACCACATTCGCCGTAACATTAACCATTGCT
GGCGCCGTTACGATGGCTACAATCTGCAGAACACTGTGGTCAACAAAAAG
GAGCAGCTGAAGAAGCCCTATGGCATATTGTGCAACTTCAAGTGCACCTG
GTTCTTCACCGTCAGCTTCCCCACTTGCGAGTTCATCTACGATTATAAGT
TATCCTGCGTGCTGTTCACTTCACTGCCCGACTGTACCAGCGTCCAGTGT
ACGCTTATGAATTACTTCGATGCAAGCTTTCTAGACCAT
BO14808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:02:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 408 | CG1537-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-RA | 869 | CG1537-RA | 329..733 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:02:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11062673..11062842 | 186..17 | 850 | 100 | Minus |
X | 23542271 | X | 11062331..11062463 | 315..183 | 665 | 100 | Minus |
X | 23542271 | X | 11062163..11062271 | 421..313 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:02:31 has no hits.
BO14808.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:30 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:15 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 241..653 | 14..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:36:27 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 329..733 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:30 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 241..653 | 14..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:34 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1537-RA | 329..733 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:58:34 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11062161..11062268 | 316..423 | 98 | <- | Minus |
X | 11062331..11062463 | 183..315 | 100 | <- | Minus |
X | 11062677..11062842 | 17..182 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:36:27 Download gff for
BO14808.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10956194..10956301 | 316..423 | 98 | <- | Minus |
arm_X | 10956364..10956496 | 183..315 | 100 | <- | Minus |
arm_X | 10956710..10956875 | 17..182 | 100 | | Minus |
BO14808.pep Sequence
Translation from 16 to 439
> BO14808.pep
MAKLVTYIFIVSSLVLWYLLLFGGRGVRGVEATNGHGGQLEGRDFHHHGG
SHHIRRNINHCWRRYDGYNLQNTVVNKKEQLKKPYGILCNFKCTWFFTVS
FPTCEFIYDYKLSCVLFTSLPDCTSVQCTLMNYFDASFLDH
BO14808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1537-PA | 135 | CG1537-PA | 1..135 | 1..135 | 760 | 100 | Plus |
CG1545-PB | 128 | CG1545-PB | 51..115 | 59..128 | 148 | 37.1 | Plus |