Clone Sequence Records
BO14810.3prime Sequence
374 bp (373 high quality bases) assembled on 2006-06-16
> BO14810.3prime
ATGGTCTAGAAAGCTTGCAGTCTGACAAATTCCCTTGTGCACCTTCCGGA
TGTTTAGGCCGCAGTTCAAGGCGCAGTTGAACTTGTTTTCATTGTAGTAG
TTCACGTTATCACTGCCGCAGATTGGATTGTACTCGCTGGTGGCCGGGCA
TGAATGGAAACAGGCGAAATAGCGCGGTGACTGGGTGGTTGGTGGAGCAG
CGTTGGCCGGGGTACTGCCCCCCGCATTCGGAGATATCGTAGGTTCAGTG
GGTTGCCGAGGCCTCAACCAGGGGTTTTCGCTATCGAACTGCGGGTAGCA
CTGCGCCATCCCAATCAATAGCAGGGCAAGACCTGAAACAAATATTTTGA
TCCAATCCATGTCGACTGATAACT
BO14810.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1220-PA | 345 | Kaz1-ORFB-RA | 1..342 | 360..19 | 1710 | 100 | Minus |
CG1220-PE | 345 | Kaz1-ORFB-RE | 1..342 | 360..19 | 1710 | 100 | Minus |
CG1220-PF | 345 | Kaz1-ORFB-RF | 1..342 | 360..19 | 1710 | 100 | Minus |
CG1220-PH | 348 | Kaz1-ORFB-RH | 1..307 | 360..54 | 1535 | 100 | Minus |
CG1220-PC | 294 | Kaz1-ORFB-RC | 1..291 | 309..19 | 1455 | 100 | Minus |
CG1220-PG | 297 | Kaz1-ORFB-RG | 1..256 | 309..54 | 1280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:46:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz1-ORFB-RF | 1130 | CG1220-RF | 616..961 | 364..19 | 1715 | 99.7 | Minus |
Kaz1-ORFB-RE | 1143 | CG1220-RE | 629..974 | 364..19 | 1715 | 99.7 | Minus |
Kaz1-ORFB-RA | 562 | CG1220-RA | 48..393 | 364..19 | 1715 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 217490..217775 | 339..54 | 1430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:46:24 has no hits.
BO14810.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:13 Download gff for
BO14810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1220-PF | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:16 Download gff for
BO14810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1220-PF | 1..345 | 18..360 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:10 Download gff for
BO14810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RA | 45..393 | 19..369 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:04:43 Download gff for
BO14810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RA | 45..393 | 19..369 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:04:43 Download gff for
BO14810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 217491..217775 | 54..338 | 100 | -> | Minus |
3L | 217855..217889 | 19..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:10 Download gff for
BO14810.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 217491..217775 | 54..338 | 100 | -> | Minus |
arm_3L | 217855..217889 | 19..53 | 100 | | Minus |
BO14810.5prime Sequence
374 bp (373 high quality bases) assembled on 2006-06-16
> BO14810.5prime
GAAGTTATCAGTCGACATGGATTGGATCAAAATATTTGTTTCAGGTCTTG
CCCTGCTATTGATTGGGATGGCGCAGTGCTACCCGCAGTTCGATAGCGAA
AACCCCTGGTTGAGGCCTCGGCAACCCACTGAACCTACGATATCTCCGAA
TGCGGGGGGCAGTACCCCGGCCAACGCTGCTCCACCAACCACCCAGTCAC
CGCGCTATTTCGCCTGTTTCCATTCATGCCCGGCCACCAGCGAGTACAAT
CCAATCTGCGGCAGTGATAACGTGAACTACTACAATGAAAACAAGTTCAA
CTGCGCCTTGAACTGCGGCCTAAACATCCGGAAGGTGCACAAGGGAATTT
GTCAGACTGCAAGCTTTCTAGACC
BO14810.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1220-PA | 345 | Kaz1-ORFB-RA | 1..342 | 17..358 | 1710 | 100 | Plus |
CG1220-PE | 345 | Kaz1-ORFB-RE | 1..342 | 17..358 | 1710 | 100 | Plus |
CG1220-PF | 345 | Kaz1-ORFB-RF | 1..342 | 17..358 | 1710 | 100 | Plus |
CG1220-PH | 348 | Kaz1-ORFB-RH | 1..307 | 17..323 | 1535 | 100 | Plus |
CG1220-PC | 294 | Kaz1-ORFB-RC | 1..291 | 68..358 | 1455 | 100 | Plus |
CG1220-PG | 297 | Kaz1-ORFB-RG | 1..256 | 68..323 | 1280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz1-ORFB-RF | 1130 | CG1220-RF | 616..961 | 13..358 | 1715 | 99.7 | Plus |
Kaz1-ORFB-RE | 1143 | CG1220-RE | 629..974 | 13..358 | 1715 | 99.7 | Plus |
Kaz1-ORFB-RA | 562 | CG1220-RA | 48..393 | 13..358 | 1715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 217490..217775 | 38..323 | 1430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 11:03:03 has no hits.
BO14810.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:14 Download gff for
BO14810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1220-PF | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:18 Download gff for
BO14810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1220-PF | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:37 Download gff for
BO14810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RA | 45..393 | 8..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:49 Download gff for
BO14810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RA | 45..393 | 8..358 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:49 Download gff for
BO14810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 217491..217775 | 39..323 | 100 | -> | Plus |
3L | 217855..217889 | 324..358 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:37 Download gff for
BO14810.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 217855..217889 | 324..358 | 100 | | Plus |
arm_3L | 217491..217775 | 39..323 | 100 | -> | Plus |
BO14810.complete Sequence
376 bp (376 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633250
> BO14810.complete
GAAGTTATCAGTCGACATGGATTGGATCAAAATATTTGTTTCAGGTCTTG
CCCTGCTATTGATTGGGATGGCGCAGTGCTACCCGCAGTTCGATAGCGAA
AACCCCTGGTTGAGGCCTCGGCAACCCACTGAACCTACGATATCTCCGAA
TGCGGGGGGCAGTACCCCGGCCAACGCTGCTCCACCAACCACCCAGTCAC
CGCGCTATTTCGCCTGTTTCCATTCATGCCCGGCCACCAGCGAGTACAAT
CCAATCTGCGGCAGTGATAACGTGAACTACTACAATGAAAACAAGTTCAA
CTGCGCCTTGAACTGCGGCCTAAACATCCGGAAGGTGCACAAGGGAATTT
GTCAGACTGCAAGCTTTCTAGACCAT
BO14810.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:01:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz1-ORFB-RF | 345 | CG1220-PF | 1..342 | 17..358 | 1710 | 100 | Plus |
Kaz1-ORFB-RE | 345 | CG1220-PE | 1..342 | 17..358 | 1710 | 100 | Plus |
Kaz1-ORFB-RA | 345 | CG1220-PA | 1..342 | 17..358 | 1710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz1-ORFB-RF | 1130 | CG1220-RF | 616..961 | 13..358 | 1715 | 99.7 | Plus |
Kaz1-ORFB-RE | 1143 | CG1220-RE | 629..974 | 13..358 | 1715 | 99.7 | Plus |
Kaz1-ORFB-RA | 562 | CG1220-RA | 48..393 | 13..358 | 1715 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 217490..217775 | 38..323 | 1430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:01:51 has no hits.
BO14810.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:31 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RF | 1..345 | 17..359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:17 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RF | 613..961 | 8..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:52 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RA | 52..393 | 17..360 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:31 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RE | 606..954 | 8..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:13:08 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Kaz1-ORFB-RA | 52..393 | 17..360 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:13:08 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 217421..217442 | 17..38 | 100 | -> | Plus |
3L | 217491..217775 | 39..323 | 100 | -> | Plus |
3L | 217855..217889 | 324..360 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:52 Download gff for
BO14810.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 217421..217442 | 17..38 | 100 | -> | Plus |
arm_3L | 217491..217775 | 39..323 | 100 | -> | Plus |
arm_3L | 217855..217889 | 324..360 | 94 | | Plus |
BO14810.pep Sequence
Translation from 16 to 376
> BO14810.pep
MDWIKIFVSGLALLLIGMAQCYPQFDSENPWLRPRQPTEPTISPNAGGST
PANAAPPTTQSPRYFACFHSCPATSEYNPICGSDNVNYYNENKFNCALNC
GLNIRKVHKGICQTASFLDH
BO14810.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Kaz1-ORFB-PF | 114 | CG1220-PF | 1..114 | 1..114 | 642 | 100 | Plus |
Kaz1-ORFB-PE | 114 | CG1220-PE | 1..114 | 1..114 | 642 | 100 | Plus |
Kaz1-ORFB-PA | 114 | CG1220-PA | 1..114 | 1..114 | 642 | 100 | Plus |
Kaz1-ORFB-PH | 115 | CG1220-PH | 1..103 | 1..103 | 577 | 99 | Plus |
CG34454-PA | 133 | CG34454-PA | 3..125 | 1..113 | 194 | 38.9 | Plus |