Clone Sequence Records
BO14811.3prime Sequence
804 bp (803 high quality bases) assembled on 2006-06-16
> BO14811.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTAGCCTTTCTTATCCTTTTCAGAAT
CCTTTAACAGATCCAGATCTCGAAGTTCTTGCAGCACAGCCTGGACGGAC
TTAAAGCGGTTGAGTGTGAAGAAGTGGAAGCCCCAAACCCCCACATCGGC
ATCCAAAACATTACGAATCGTTCGGACGGTGAGGCTAACAAAGAACCTTC
TTATCAGATCTTGGTCAGACTTCATATCCTTCATATGGGCACTATGCAGC
TGATCGAGTTGCTCTCGCAAATCATCTGGCAGATGGACGCCGGTTATTTG
CTCGATCATTGAGTAGGAGCGAAAGGATTCATGCGACATCAGTCCCACAA
CAATGGGTACCGAGATTCCAGCTGCTCGACAGTCCTTCACAAATTGCACT
ATGACCTCGGGACGGTAGCATAACTGTGTGATAATGCAATCTGCTCCAGC
ATCAATCTTTGCCTTTAGAAACTCCATGTTCTTAGCTGAATTTTGTGGTA
TGTCGCCTAAACTAGTGTATCCCTCTGGATATCCACCCACACAGACTGAT
ATTGTTTCACCCCTCTGCCGTATCGATTGCTCCACCATGGGGTAGCTAAT
CGAGAAATCCTGATCCTCGTGAACTCGATCCCCTCGAACGGCCAAAAGAC
TGCTAAAGTTGAGGGCCAAAAACTGATCCAGTCGCTGCCTACTCATTCGA
TAGGCGGACACATGGGGCAGCACGGGAATGCGTGTGGCCAGGTGTTGGGC
CATCTGAAGGCTCTCCACCTGACCCACTGGCTCCACGTCCCAGTACCGCT
GACT
BO14811.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-PA | 1050 | CG7560-RA | 262..1047 | 804..19 | 3930 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1107 | CG7560-RA | 286..1071 | 804..19 | 3930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11425920..11426359 | 458..19 | 2200 | 100 | Minus |
3L | 28110227 | 3L | 11425443..11425689 | 804..558 | 1235 | 100 | Minus |
3L | 28110227 | 3L | 11425753..11425854 | 558..457 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:08:26 has no hits.
BO14811.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:15 Download gff for
BO14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-PA | 262..1050 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:19 Download gff for
BO14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-PA | 262..1050 | 16..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:28 Download gff for
BO14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 286..1071 | 19..804 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:43 Download gff for
BO14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 286..1071 | 19..804 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:43 Download gff for
BO14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11425443..11425689 | 558..804 | 100 | -> | Minus |
3L | 11425754..11425854 | 457..557 | 100 | -> | Minus |
3L | 11425922..11426359 | 19..456 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:28 Download gff for
BO14811.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11418543..11418789 | 558..804 | 100 | -> | Minus |
arm_3L | 11418854..11418954 | 457..557 | 100 | -> | Minus |
arm_3L | 11419022..11419459 | 19..456 | 100 | | Minus |
BO14811.5prime Sequence
897 bp (778 high quality bases) assembled on 2006-06-16
> BO14811.5prime
GAAGTTATCAGTCGACATGCATGCGATTCAAGTGCCCGCCGGTGGTTCGT
CGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCCCCGATCAA
AATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTGGCGGAGCG
AACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGCCAGCGATC
CGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGCCGCTCCTG
CCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGGGACGTGGA
GCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCTGGCCACAC
GCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTAGGCAGCGA
CTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCCGTTCGAGG
GGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCCCATGGTGG
AGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTGTGGGTGGA
TATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAATTCAGCTAA
GAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGATTGCATTA
TCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGAC
TGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTGATGTCGCA
TGAATCCTTTCGCTCCTACTCAATGATCGAGCAAATAACCGGCGTCCATC
TGCCAGATGATTTGCGAGAGCAACTCGATCAGCTGCATAGTGCCCATATG
AAGGATATGAAGTCTGACCAAGATCTGATAAGAAAGTTCTTTGTTAG
BO14811.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-PA | 1050 | CG7560-RA | 1..881 | 17..897 | 4380 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1107 | CG7560-RA | 25..905 | 17..897 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11425182..11425689 | 17..524 | 2540 | 100 | Plus |
3L | 28110227 | 3L | 11425920..11426193 | 624..897 | 1355 | 99.6 | Plus |
3L | 28110227 | 3L | 11425753..11425854 | 524..625 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:56:04 has no hits.
BO14811.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:16 Download gff for
BO14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:20 Download gff for
BO14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-PA | 1..881 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:14 Download gff for
BO14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 22..905 | 12..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:20 Download gff for
BO14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 22..905 | 12..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:20 Download gff for
BO14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11425922..11426193 | 626..897 | 99 | | Plus |
3L | 11425179..11425689 | 12..524 | 99 | -> | Plus |
3L | 11425754..11425854 | 525..625 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:14 Download gff for
BO14811.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11418279..11418789 | 12..524 | 99 | -> | Plus |
arm_3L | 11418854..11418954 | 525..625 | 100 | -> | Plus |
arm_3L | 11419022..11419293 | 626..897 | 99 | | Plus |
BO14811.complete Sequence
1081 bp (1081 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633251
> BO14811.complete
GAAGTTATCAGTCGACATGCATGCGATTCAAGTGCCCGCCGGTGGTTCGT
CGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCCCCGATCAA
AATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTGGCGGAGCG
AACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGCCAGCGATC
CGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGCCGCTCCTG
CCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGGGACGTGGA
GCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCTGGCCACAC
GCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTAGGCAGCGA
CTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCCGTTCGAGG
GGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCCCATGGTGG
AGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTGTGGGTGGA
TATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAATTCAGCTAA
GAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGATTGCATTA
TCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGAC
TGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTGATGTCGCA
TGAATCCTTTCGCTCCTACTCAATGATCGAGCAAATAACCGGCGTCCATC
TGCCAGATGATTTGCGAGAGCAACTCGATCAGCTGCATAGTGCCCATATG
AAGGATATGAAGTCTGACCAAGATCTGATAAGAAGGTTCTTTGTTAGCCT
CACCGTCCGAACGATTCGTAATGTTTTGGATGCCGATGTGGGGGTTTGGG
GCTTCCACTTCTTCACACTCAACCGCTTTAAGTCCGTCCAGGCTGTGCTG
CAAGAACTTCGAGATCTGGATCTGTTAAAGGATTCTGAAAAGGATAAGAA
AGGCTACGAAAAGGCAAGCTTTCTAGACCAT
BO14811.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1050 | CG7560-PA | 1..1047 | 17..1063 | 5235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-RA | 1107 | CG7560-RA | 25..1071 | 17..1063 | 5235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11425182..11425689 | 17..524 | 2540 | 100 | Plus |
3L | 28110227 | 3L | 11425920..11426359 | 624..1063 | 2200 | 100 | Plus |
3L | 28110227 | 3L | 11425753..11425854 | 524..625 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:43:50 has no hits.
BO14811.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:34 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 1..1050 | 17..1066 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:50 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 30..1079 | 12..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:20 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 25..1071 | 17..1065 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:34 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 30..1079 | 12..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:07 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7560-RA | 25..1071 | 17..1065 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:07 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11425182..11425689 | 17..524 | 100 | -> | Plus |
3L | 11425754..11425854 | 525..625 | 100 | -> | Plus |
3L | 11425922..11426359 | 626..1065 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:20 Download gff for
BO14811.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11418282..11418789 | 17..524 | 100 | -> | Plus |
arm_3L | 11418854..11418954 | 525..625 | 100 | -> | Plus |
arm_3L | 11419022..11419459 | 626..1065 | 99 | | Plus |
BO14811.pep Sequence
Translation from 16 to 1081
> BO14811.pep
MHAIQVPAGGSSPGAASYIPCVTFAPDQNESVVTKQRIGTLVAERTAQHR
LFYGIEVMASDPSGRPTCLDFNHFLPLLPTFVSFVWLSQRYWDVEPVGQV
ESLQMAQHLATRIPVLPHVSAYRMSRQRLDQFLALNFSSLLAVRGDRVHE
DQDFSISYPMVEQSIRQRGETISVCVGGYPEGYTSLGDIPQNSAKNMEFL
KAKIDAGADCIITQLCYRPEVIVQFVKDCRAAGISVPIVVGLMSHESFRS
YSMIEQITGVHLPDDLREQLDQLHSAHMKDMKSDQDLIRRFFVSLTVRTI
RNVLDADVGVWGFHFFTLNRFKSVQAVLQELRDLDLLKDSEKDKKGYEKA
SFLDH
BO14811.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7560-PA | 349 | CG7560-PA | 1..349 | 1..349 | 1809 | 100 | Plus |