Clone BO14811 Report

Search the DGRC for BO14811

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG7560-RA
Protein status:BO14811.pep: validated full length
Sequenced Size:1081

Clone Sequence Records

BO14811.3prime Sequence

804 bp (803 high quality bases) assembled on 2006-06-16

> BO14811.3prime
ATGGTCTAGAAAGCTTGCCTTTTCGTAGCCTTTCTTATCCTTTTCAGAAT
CCTTTAACAGATCCAGATCTCGAAGTTCTTGCAGCACAGCCTGGACGGAC
TTAAAGCGGTTGAGTGTGAAGAAGTGGAAGCCCCAAACCCCCACATCGGC
ATCCAAAACATTACGAATCGTTCGGACGGTGAGGCTAACAAAGAACCTTC
TTATCAGATCTTGGTCAGACTTCATATCCTTCATATGGGCACTATGCAGC
TGATCGAGTTGCTCTCGCAAATCATCTGGCAGATGGACGCCGGTTATTTG
CTCGATCATTGAGTAGGAGCGAAAGGATTCATGCGACATCAGTCCCACAA
CAATGGGTACCGAGATTCCAGCTGCTCGACAGTCCTTCACAAATTGCACT
ATGACCTCGGGACGGTAGCATAACTGTGTGATAATGCAATCTGCTCCAGC
ATCAATCTTTGCCTTTAGAAACTCCATGTTCTTAGCTGAATTTTGTGGTA
TGTCGCCTAAACTAGTGTATCCCTCTGGATATCCACCCACACAGACTGAT
ATTGTTTCACCCCTCTGCCGTATCGATTGCTCCACCATGGGGTAGCTAAT
CGAGAAATCCTGATCCTCGTGAACTCGATCCCCTCGAACGGCCAAAAGAC
TGCTAAAGTTGAGGGCCAAAAACTGATCCAGTCGCTGCCTACTCATTCGA
TAGGCGGACACATGGGGCAGCACGGGAATGCGTGTGGCCAGGTGTTGGGC
CATCTGAAGGCTCTCCACCTGACCCACTGGCTCCACGTCCCAGTACCGCT
GACT

BO14811.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-PA 1050 CG7560-RA 262..1047 804..19 3930 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-RA 1107 CG7560-RA 286..1071 804..19 3930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11425920..11426359 458..19 2200 100 Minus
3L 28110227 3L 11425443..11425689 804..558 1235 100 Minus
3L 28110227 3L 11425753..11425854 558..457 510 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:08:26 has no hits.

BO14811.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:15 Download gff for BO14811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-PA 262..1050 16..804 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:19 Download gff for BO14811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-PA 262..1050 16..804 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:15:28 Download gff for BO14811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 286..1071 19..804 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 00:23:43 Download gff for BO14811.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 286..1071 19..804 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 00:23:43 Download gff for BO14811.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11425443..11425689 558..804 100 -> Minus
3L 11425754..11425854 457..557 100 -> Minus
3L 11425922..11426359 19..456 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:15:28 Download gff for BO14811.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11418543..11418789 558..804 100 -> Minus
arm_3L 11418854..11418954 457..557 100 -> Minus
arm_3L 11419022..11419459 19..456 100   Minus

BO14811.5prime Sequence

897 bp (778 high quality bases) assembled on 2006-06-16

> BO14811.5prime
GAAGTTATCAGTCGACATGCATGCGATTCAAGTGCCCGCCGGTGGTTCGT
CGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCCCCGATCAA
AATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTGGCGGAGCG
AACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGCCAGCGATC
CGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGCCGCTCCTG
CCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGGGACGTGGA
GCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCTGGCCACAC
GCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTAGGCAGCGA
CTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCCGTTCGAGG
GGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCCCATGGTGG
AGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTGTGGGTGGA
TATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAATTCAGCTAA
GAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGATTGCATTA
TCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGAC
TGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTGATGTCGCA
TGAATCCTTTCGCTCCTACTCAATGATCGAGCAAATAACCGGCGTCCATC
TGCCAGATGATTTGCGAGAGCAACTCGATCAGCTGCATAGTGCCCATATG
AAGGATATGAAGTCTGACCAAGATCTGATAAGAAAGTTCTTTGTTAG

BO14811.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-PA 1050 CG7560-RA 1..881 17..897 4380 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:56:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-RA 1107 CG7560-RA 25..905 17..897 4390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:56:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11425182..11425689 17..524 2540 100 Plus
3L 28110227 3L 11425920..11426193 624..897 1355 99.6 Plus
3L 28110227 3L 11425753..11425854 524..625 510 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:56:04 has no hits.

BO14811.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:16 Download gff for BO14811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:20 Download gff for BO14811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-PA 1..881 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:14 Download gff for BO14811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 22..905 12..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:20 Download gff for BO14811.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 22..905 12..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:20 Download gff for BO14811.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11425922..11426193 626..897 99   Plus
3L 11425179..11425689 12..524 99 -> Plus
3L 11425754..11425854 525..625 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:14 Download gff for BO14811.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11418279..11418789 12..524 99 -> Plus
arm_3L 11418854..11418954 525..625 100 -> Plus
arm_3L 11419022..11419293 626..897 99   Plus

BO14811.complete Sequence

1081 bp (1081 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633251

> BO14811.complete
GAAGTTATCAGTCGACATGCATGCGATTCAAGTGCCCGCCGGTGGTTCGT
CGCCTGGTGCTGCCTCCTACATTCCCTGCGTGACCTTTGCCCCCGATCAA
AATGAATCCGTAGTGACGAAGCAGCGGATAGGAACGCTCGTGGCGGAGCG
AACAGCCCAACATCGCCTCTTCTACGGCATCGAGGTGATGGCCAGCGATC
CGAGTGGCCGGCCAACCTGCCTGGACTTTAATCACTTCCTGCCGCTCCTG
CCCACCTTCGTGAGCTTCGTTTGGCTGAGTCAGCGGTACTGGGACGTGGA
GCCAGTGGGTCAGGTGGAGAGCCTTCAGATGGCCCAACACCTGGCCACAC
GCATTCCCGTGCTGCCCCATGTGTCCGCCTATCGAATGAGTAGGCAGCGA
CTGGATCAGTTTTTGGCCCTCAACTTTAGCAGTCTTTTGGCCGTTCGAGG
GGATCGAGTTCACGAGGATCAGGATTTCTCGATTAGCTACCCCATGGTGG
AGCAATCGATACGGCAGAGGGGTGAAACAATATCAGTCTGTGTGGGTGGA
TATCCAGAGGGATACACTAGTTTAGGCGACATACCACAAAATTCAGCTAA
GAACATGGAGTTTCTAAAGGCAAAGATTGATGCTGGAGCAGATTGCATTA
TCACACAGTTATGCTACCGTCCCGAGGTCATAGTGCAATTTGTGAAGGAC
TGTCGAGCAGCTGGAATCTCGGTACCCATTGTTGTGGGACTGATGTCGCA
TGAATCCTTTCGCTCCTACTCAATGATCGAGCAAATAACCGGCGTCCATC
TGCCAGATGATTTGCGAGAGCAACTCGATCAGCTGCATAGTGCCCATATG
AAGGATATGAAGTCTGACCAAGATCTGATAAGAAGGTTCTTTGTTAGCCT
CACCGTCCGAACGATTCGTAATGTTTTGGATGCCGATGTGGGGGTTTGGG
GCTTCCACTTCTTCACACTCAACCGCTTTAAGTCCGTCCAGGCTGTGCTG
CAAGAACTTCGAGATCTGGATCTGTTAAAGGATTCTGAAAAGGATAAGAA
AGGCTACGAAAAGGCAAGCTTTCTAGACCAT

BO14811.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:43:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-RA 1050 CG7560-PA 1..1047 17..1063 5235 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-RA 1107 CG7560-RA 25..1071 17..1063 5235 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:43:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11425182..11425689 17..524 2540 100 Plus
3L 28110227 3L 11425920..11426359 624..1063 2200 100 Plus
3L 28110227 3L 11425753..11425854 524..625 510 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:43:50 has no hits.

BO14811.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:34 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 1..1050 17..1066 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:50 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 30..1079 12..1063 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:20 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 25..1071 17..1065 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:34 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 30..1079 12..1063 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:15:07 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
CG7560-RA 25..1071 17..1065 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:15:07 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11425182..11425689 17..524 100 -> Plus
3L 11425754..11425854 525..625 100 -> Plus
3L 11425922..11426359 626..1065 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:20 Download gff for BO14811.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11418282..11418789 17..524 100 -> Plus
arm_3L 11418854..11418954 525..625 100 -> Plus
arm_3L 11419022..11419459 626..1065 99   Plus

BO14811.pep Sequence

Translation from 16 to 1081

> BO14811.pep
MHAIQVPAGGSSPGAASYIPCVTFAPDQNESVVTKQRIGTLVAERTAQHR
LFYGIEVMASDPSGRPTCLDFNHFLPLLPTFVSFVWLSQRYWDVEPVGQV
ESLQMAQHLATRIPVLPHVSAYRMSRQRLDQFLALNFSSLLAVRGDRVHE
DQDFSISYPMVEQSIRQRGETISVCVGGYPEGYTSLGDIPQNSAKNMEFL
KAKIDAGADCIITQLCYRPEVIVQFVKDCRAAGISVPIVVGLMSHESFRS
YSMIEQITGVHLPDDLREQLDQLHSAHMKDMKSDQDLIRRFFVSLTVRTI
RNVLDADVGVWGFHFFTLNRFKSVQAVLQELRDLDLLKDSEKDKKGYEKA
SFLDH

BO14811.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7560-PA 349 CG7560-PA 1..349 1..349 1809 100 Plus