Clone BO14812 Report

Search the DGRC for BO14812

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG3652-RA
Protein status:BO14812.pep: validated full length
Sequenced Size:706

Clone Sequence Records

BO14812.3prime Sequence

704 bp (703 high quality bases) assembled on 2006-06-16

> BO14812.3prime
ATGGTCTAGAAAGCTTGCATTGTGGGAAAGAACCAACCACGAGATGATGA
AGAAGAACAGAAAGATGGGGTACACGGCAAGCGGTTTTCGATGGGGAGGC
TGGCTCTGACCCAGGAAAACAAAGGAAGCGTAAGTGGCCCAGGCAAAGCC
TATGGTGGTGGTCACAAAACGCAGAAAGAAGAGCAGCCGCGTTTGGGTGG
CAAGCAGGATTACCCGGCACACAATTAGGGAAATGGCCACCGGCGTAAGG
CAGTAGCCCAGCACGCAGACGGATTGGAAGAATGAGATATTGCCGCCCAG
CAGCTTGGAGTTGAGTGTGACTACGGCTGCACCTATCCAGACGATTACGA
AGACCTGGGCGAACTCGGGTCCGTTGTCAGACATGCTGTCGGCGGTGGAG
GAGCCTTGTAGTATGGTGGCCATGAAGGTGCACAGCACCAGTGGACCCCA
AAGGTCCCAATCTCGTAGCAGACTGGACTTCTCCTTGGGGTACAGGACGT
GGTAGAACTTAATGCCTACGGCCCGAATGTCCCTCAGCACTGTCTCGCGG
ATGGGCTCATCCAGAGTATTGTATTCCGGCACTCCGCTCGCGGACGTTGC
AGTTGTGGTTCTTTTGCCCGGAATCGACATGTCGCCCTCCAATGAAGGCG
ACGTGTTCACGTCCTCGAACATATCTAGTTTGGAATCCATGTCGACTGAT
AACT

BO14812.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-PA 675 CG3652-RA 1..672 690..19 3360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:11:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-RA 867 CG3652-RA 87..758 690..19 3360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4393501..4393715 458..672 1075 100 Plus
2L 23513712 2L 4393262..4393433 287..458 860 100 Plus
2L 23513712 2L 4393042..4393199 129..286 790 100 Plus
2L 23513712 2L 4392879..4392989 19..129 555 100 Plus
Blast to na_te.dros performed on 2015-02-03 06:11:42 has no hits.

BO14812.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:17 Download gff for BO14812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-PA 1..675 18..690 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:22 Download gff for BO14812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-PA 1..675 18..690 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:21:15 Download gff for BO14812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 85..758 19..694 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:36:47 Download gff for BO14812.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 85..758 19..694 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:36:47 Download gff for BO14812.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 4392879..4392988 19..128 100 <- Plus
2L 4393042..4393199 129..286 100 <- Plus
2L 4393262..4393433 287..458 100 <- Plus
2L 4393502..4393715 459..672 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:21:15 Download gff for BO14812.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4392879..4392988 19..128 100 <- Plus
arm_2L 4393042..4393199 129..286 100 <- Plus
arm_2L 4393262..4393433 287..458 100 <- Plus
arm_2L 4393502..4393715 459..672 100 <- Plus

BO14812.5prime Sequence

704 bp (703 high quality bases) assembled on 2006-06-16

> BO14812.5prime
GAAGTTATCAGTCGACATGGATTCCAAACTAGATATGTTCGAGGACGTGA
ACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACC
ACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGA
GCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAAGT
TCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACGAGATTGG
GACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACA
AGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCC
AGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCC
AAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGG
CTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCC
TGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACC
ACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCA
GAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGT
TCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAATGCAAGCTTTCTA
GACC

BO14812.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-PA 675 CG3652-RA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-RA 867 CG3652-RA 87..758 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:23:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4393501..4393715 249..35 1075 100 Minus
2L 23513712 2L 4393262..4393433 420..249 860 100 Minus
2L 23513712 2L 4393042..4393199 578..421 790 100 Minus
2L 23513712 2L 4392879..4392989 688..578 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:23:05 has no hits.

BO14812.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:18 Download gff for BO14812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-PA 1..675 17..689 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:24 Download gff for BO14812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-PA 1..675 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:13 Download gff for BO14812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 85..758 13..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:31 Download gff for BO14812.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 85..758 13..688 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:31 Download gff for BO14812.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 4393502..4393715 35..248 100 <- Minus
2L 4392879..4392988 579..688 100 <- Minus
2L 4393042..4393199 421..578 100 <- Minus
2L 4393262..4393433 249..420 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:13 Download gff for BO14812.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4392879..4392988 579..688 100 <- Minus
arm_2L 4393042..4393199 421..578 100 <- Minus
arm_2L 4393262..4393433 249..420 100 <- Minus
arm_2L 4393502..4393715 35..248 100 <- Minus

BO14812.complete Sequence

706 bp (706 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633252

> BO14812.complete
GAAGTTATCAGTCGACATGGATTCCAAACTAGATATGTTCGAGGACGTGA
ACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACC
ACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGA
GCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAAGT
TCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACGAGATTGG
GACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACA
AGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCC
AGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCC
AAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGG
CTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCC
TGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACC
ACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCA
GAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGT
TCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAATGCAAGCTTTCTA
GACCAT

BO14812.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-RA 675 CG3652-PA 1..672 17..688 3360 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-RA 867 CG3652-RA 87..758 17..688 3360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4393501..4393715 249..35 1075 100 Minus
2L 23513712 2L 4393262..4393433 420..249 860 100 Minus
2L 23513712 2L 4393042..4393199 578..421 790 100 Minus
2L 23513712 2L 4392879..4392989 688..578 555 100 Minus
Blast to na_te.dros performed on 2014-11-27 23:46:29 has no hits.

BO14812.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:32 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 1..675 17..689 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:19 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 23..696 13..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:35 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 87..758 17..690 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:32 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 23..696 13..688 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:53 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
CG3652-RA 87..758 17..690 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:53 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4393502..4393715 35..248 100 <- Minus
2L 4393773..4393790 17..34 100   Minus
2L 4393262..4393433 249..420 100 <- Minus
2L 4392877..4392988 579..690 98 <- Minus
2L 4393042..4393199 421..578 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:35 Download gff for BO14812.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4392877..4392988 579..690 98 <- Minus
arm_2L 4393042..4393199 421..578 100 <- Minus
arm_2L 4393262..4393433 249..420 100 <- Minus
arm_2L 4393502..4393715 35..248 100 <- Minus
arm_2L 4393773..4393790 17..34 100   Minus

BO14812.pep Sequence

Translation from 16 to 706

> BO14812.pep
MDSKLDMFEDVNTSPSLEGDMSIPGKRTTTATSASGVPEYNTLDEPIRET
VLRDIRAVGIKFYHVLYPKEKSSLLRDWDLWGPLVLCTFMATILQGSSTA
DSMSDNGPEFAQVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLTP
VAISLIVCRVILLATQTRLLFFLRFVTTTIGFAWATYASFVFLGQSQPPH
RKPLAVYPIFLFFFIISWLVLSHNASFLDH

BO14812.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3652-PA 224 CG3652-PA 1..224 1..224 1161 100 Plus