Clone Sequence Records
BO14812.3prime Sequence
704 bp (703 high quality bases) assembled on 2006-06-16
> BO14812.3prime
ATGGTCTAGAAAGCTTGCATTGTGGGAAAGAACCAACCACGAGATGATGA
AGAAGAACAGAAAGATGGGGTACACGGCAAGCGGTTTTCGATGGGGAGGC
TGGCTCTGACCCAGGAAAACAAAGGAAGCGTAAGTGGCCCAGGCAAAGCC
TATGGTGGTGGTCACAAAACGCAGAAAGAAGAGCAGCCGCGTTTGGGTGG
CAAGCAGGATTACCCGGCACACAATTAGGGAAATGGCCACCGGCGTAAGG
CAGTAGCCCAGCACGCAGACGGATTGGAAGAATGAGATATTGCCGCCCAG
CAGCTTGGAGTTGAGTGTGACTACGGCTGCACCTATCCAGACGATTACGA
AGACCTGGGCGAACTCGGGTCCGTTGTCAGACATGCTGTCGGCGGTGGAG
GAGCCTTGTAGTATGGTGGCCATGAAGGTGCACAGCACCAGTGGACCCCA
AAGGTCCCAATCTCGTAGCAGACTGGACTTCTCCTTGGGGTACAGGACGT
GGTAGAACTTAATGCCTACGGCCCGAATGTCCCTCAGCACTGTCTCGCGG
ATGGGCTCATCCAGAGTATTGTATTCCGGCACTCCGCTCGCGGACGTTGC
AGTTGTGGTTCTTTTGCCCGGAATCGACATGTCGCCCTCCAATGAAGGCG
ACGTGTTCACGTCCTCGAACATATCTAGTTTGGAATCCATGTCGACTGAT
AACT
BO14812.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-PA | 675 | CG3652-RA | 1..672 | 690..19 | 3360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:11:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 867 | CG3652-RA | 87..758 | 690..19 | 3360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4393501..4393715 | 458..672 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 4393262..4393433 | 287..458 | 860 | 100 | Plus |
2L | 23513712 | 2L | 4393042..4393199 | 129..286 | 790 | 100 | Plus |
2L | 23513712 | 2L | 4392879..4392989 | 19..129 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 06:11:42 has no hits.
BO14812.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:17 Download gff for
BO14812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-PA | 1..675 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:22 Download gff for
BO14812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-PA | 1..675 | 18..690 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:21:15 Download gff for
BO14812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 85..758 | 19..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:36:47 Download gff for
BO14812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 85..758 | 19..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:36:47 Download gff for
BO14812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4392879..4392988 | 19..128 | 100 | <- | Plus |
2L | 4393042..4393199 | 129..286 | 100 | <- | Plus |
2L | 4393262..4393433 | 287..458 | 100 | <- | Plus |
2L | 4393502..4393715 | 459..672 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:21:15 Download gff for
BO14812.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4392879..4392988 | 19..128 | 100 | <- | Plus |
arm_2L | 4393042..4393199 | 129..286 | 100 | <- | Plus |
arm_2L | 4393262..4393433 | 287..458 | 100 | <- | Plus |
arm_2L | 4393502..4393715 | 459..672 | 100 | <- | Plus |
BO14812.5prime Sequence
704 bp (703 high quality bases) assembled on 2006-06-16
> BO14812.5prime
GAAGTTATCAGTCGACATGGATTCCAAACTAGATATGTTCGAGGACGTGA
ACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACC
ACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGA
GCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAAGT
TCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACGAGATTGG
GACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACA
AGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCC
AGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCC
AAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGG
CTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCC
TGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACC
ACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCA
GAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGT
TCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAATGCAAGCTTTCTA
GACC
BO14812.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-PA | 675 | CG3652-RA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:23:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 867 | CG3652-RA | 87..758 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:23:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4393501..4393715 | 249..35 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 4393262..4393433 | 420..249 | 860 | 100 | Minus |
2L | 23513712 | 2L | 4393042..4393199 | 578..421 | 790 | 100 | Minus |
2L | 23513712 | 2L | 4392879..4392989 | 688..578 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:23:05 has no hits.
BO14812.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:18 Download gff for
BO14812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-PA | 1..675 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:24 Download gff for
BO14812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-PA | 1..675 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:13 Download gff for
BO14812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 85..758 | 13..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:17:31 Download gff for
BO14812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 85..758 | 13..688 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:17:31 Download gff for
BO14812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
2L | 4392879..4392988 | 579..688 | 100 | <- | Minus |
2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:13 Download gff for
BO14812.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4392879..4392988 | 579..688 | 100 | <- | Minus |
arm_2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
arm_2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
arm_2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
BO14812.complete Sequence
706 bp (706 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633252
> BO14812.complete
GAAGTTATCAGTCGACATGGATTCCAAACTAGATATGTTCGAGGACGTGA
ACACGTCGCCTTCATTGGAGGGCGACATGTCGATTCCGGGCAAAAGAACC
ACAACTGCAACGTCCGCGAGCGGAGTGCCGGAATACAATACTCTGGATGA
GCCCATCCGCGAGACAGTGCTGAGGGACATTCGGGCCGTAGGCATTAAGT
TCTACCACGTCCTGTACCCCAAGGAGAAGTCCAGTCTGCTACGAGATTGG
GACCTTTGGGGTCCACTGGTGCTGTGCACCTTCATGGCCACCATACTACA
AGGCTCCTCCACCGCCGACAGCATGTCTGACAACGGACCCGAGTTCGCCC
AGGTCTTCGTAATCGTCTGGATAGGTGCAGCCGTAGTCACACTCAACTCC
AAGCTGCTGGGCGGCAATATCTCATTCTTCCAATCCGTCTGCGTGCTGGG
CTACTGCCTTACGCCGGTGGCCATTTCCCTAATTGTGTGCCGGGTAATCC
TGCTTGCCACCCAAACGCGGCTGCTCTTCTTTCTGCGTTTTGTGACCACC
ACCATAGGCTTTGCCTGGGCCACTTACGCTTCCTTTGTTTTCCTGGGTCA
GAGCCAGCCTCCCCATCGAAAACCGCTTGCCGTGTACCCCATCTTTCTGT
TCTTCTTCATCATCTCGTGGTTGGTTCTTTCCCACAATGCAAGCTTTCTA
GACCAT
BO14812.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 675 | CG3652-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:46:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-RA | 867 | CG3652-RA | 87..758 | 17..688 | 3360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 4393501..4393715 | 249..35 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 4393262..4393433 | 420..249 | 860 | 100 | Minus |
2L | 23513712 | 2L | 4393042..4393199 | 578..421 | 790 | 100 | Minus |
2L | 23513712 | 2L | 4392879..4392989 | 688..578 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:46:29 has no hits.
BO14812.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:32 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 1..675 | 17..689 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:19 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 23..696 | 13..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:35 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 87..758 | 17..690 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:32 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 23..696 | 13..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:07:53 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3652-RA | 87..758 | 17..690 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:07:53 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
2L | 4393773..4393790 | 17..34 | 100 | | Minus |
2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
2L | 4392877..4392988 | 579..690 | 98 | <- | Minus |
2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:35 Download gff for
BO14812.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 4392877..4392988 | 579..690 | 98 | <- | Minus |
arm_2L | 4393042..4393199 | 421..578 | 100 | <- | Minus |
arm_2L | 4393262..4393433 | 249..420 | 100 | <- | Minus |
arm_2L | 4393502..4393715 | 35..248 | 100 | <- | Minus |
arm_2L | 4393773..4393790 | 17..34 | 100 | | Minus |
BO14812.pep Sequence
Translation from 16 to 706
> BO14812.pep
MDSKLDMFEDVNTSPSLEGDMSIPGKRTTTATSASGVPEYNTLDEPIRET
VLRDIRAVGIKFYHVLYPKEKSSLLRDWDLWGPLVLCTFMATILQGSSTA
DSMSDNGPEFAQVFVIVWIGAAVVTLNSKLLGGNISFFQSVCVLGYCLTP
VAISLIVCRVILLATQTRLLFFLRFVTTTIGFAWATYASFVFLGQSQPPH
RKPLAVYPIFLFFFIISWLVLSHNASFLDH
BO14812.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3652-PA | 224 | CG3652-PA | 1..224 | 1..224 | 1161 | 100 | Plus |