Clone Sequence Records
BO14815.3prime Sequence
885 bp (873 high quality bases) assembled on 2006-06-16
> BO14815.3prime
ATGGTCTAGAAAGCTTGCTTGCGTCTTTGTCTTAGTATCTCTAGAGATTT
TCCCCCGACAAAAAGCTGTTTTGAATATCTTTATGAGCTTCCGCAGGGCG
ACAATCAGTAGAAATAAGATTCCCAGCCAGAACAGGAGAACATCGATGGA
ATTGTAGACGATCCAGTTTATGTGTCTGGCTTCACTTTGGATATGTGGAG
CTCCCCCATACTTTATGACATGCTCAATCCACCAGGTGGCCAATTTGATA
GGGGGAATGGGACGCTGGCGAAATGCTTCGCTGGATCGTCTAACTCTTTC
CGCGAATTTTTTATCAAGTATAATACGAAGTCCTCTGGTTATGTGATTCG
AATCGAAGTCTCTGAAGTCAACGATAACTCCGAAACCTCTTTGTTTCACT
GCGCCTGAGTTGAGAAACTGATCTCCGTAGAAAGGTGTCACCAGCATGGG
AACTCCACAGTGAATCGCCTCCGTGGTGCCCAAAAGTCCGCCATGGGAGA
TAAAAGCCCTGATCTTTGGGTGACACAAAAGATCTCTTTGTGGCAGCCAG
TCGAAAGTGTAGAGGTTCGAGGGCTGTTTATCTTCCAGAGATTCTAAACT
TTTCCAGCGCATTACAAAGTTGTATTCCTTAAGTTGGGAAATGCTTTGGA
AAAGCGCACTTCGCTTGCCCGAAGGAAGTGTATTGCTGTTTACCATGGAG
CCCCAGCTGATATAGATTACTCCATTGGGAGATCGATCCAGAAGATCTAG
CAGGTGTTGTGGAAGTGGTTTTATCGGCCCCACTTGCAGCCCACCCACTT
CAATCACATTCGGAGCATAGGGGCGTGGTCCGGTTAGGGCGTAATGCTGA
TTGATCAGCATCAGACTCGTATTCTTCACGATCTC
BO14815.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17324-PA | 1578 | CG17324-RA | 709..1575 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17324-RB | 1680 | CG17324-RB | 786..1652 | 885..19 | 4335 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:47:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18821723..18822171 | 756..308 | 2245 | 100 | Minus |
2L | 23513712 | 2L | 18822257..18822545 | 307..19 | 1445 | 100 | Minus |
2L | 23513712 | 2L | 18821086..18821214 | 885..757 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:47:57 has no hits.
BO14815.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:19 Download gff for
BO14815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-PA | 709..1578 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:25 Download gff for
BO14815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-PA | 709..1578 | 15..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:43:02 Download gff for
BO14815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-RB | 786..1661 | 10..885 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:53 Download gff for
BO14815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-RB | 786..1661 | 10..885 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:53 Download gff for
BO14815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18822257..18822554 | 10..307 | 98 | | Minus |
2L | 18821086..18821214 | 757..885 | 100 | -> | Minus |
2L | 18821723..18822171 | 308..756 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:43:02 Download gff for
BO14815.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18821086..18821214 | 757..885 | 100 | -> | Minus |
arm_2L | 18821723..18822171 | 308..756 | 100 | -> | Minus |
arm_2L | 18822257..18822554 | 10..307 | 98 | | Minus |
BO14815.complete Sequence
1609 bp assembled on 2011-06-28
GenBank Submission: KX796603
> BO14815.complete
GAAGTTATCAGTCGACATGAAGTTGCTACCTCTGGCTTTATTAGCCTTTT
TATTAAGACCGAAACCCAATGACGCGGCGCACATTTTGGGCTTGTTTCAA
CATCCCGGAAAGAGCCACTTTGACTTCTTCCGTCCCATGTTCTTGGCCTT
GGCGGAGAGGGGTCACAACATTAGCATGTATAGCTATTTTCCACTGGAGA
AACCAGTGGCCAACTACACGGATTACGTCTTTCAAGGAATGCCCTTGCTC
ACCGATATTGTGGACTTAAGTAACTTTGAATCCGAATGGAAGCCCCTGGG
ACTGCCGTTCAAGGTGCCCACCTACTTTATGCTTCACGATTGGGGTCTGC
GATCCTGTAAGGTGGCCCTGAACTCACCCCTCATCACCCAACTGCTCAAG
TCCCCCATTCGATATGACGTCATACTCCTGGAACACTTCTCCAACGATTG
CATGGCAGCGGTGGCCCACCTATTGAATGCACCTGTAATCGCATTGAGTA
GCTGTGCGATAATGCCGTGGCACTACAAACGCATGGGAAGTCCGTTCATT
AACCCCATTATGCCCATGAATTTCCTGCCCTACACTGATGAGATGAGTCT
GATCGATCGACTGAATAATTTCTTTCATTTCCACACCGTTAATACTCTGT
ACAACATGATTACCCAACCAGCCACCGATGCCCTGATCGCTGAGAGATTT
GGACCCGGTCTGCCGCCCATCAATGAGATCGTGAAGAATACGAGTCTGAT
GCTGATCAATCAGCATTACGCCCTAACCGGACCACGCCCCTATGCTCCGA
ATGTGATTGAAGTGGGTGGGCTGCAAGTGGGGCCGATAAAACCACTTCCA
CAACACCTGCTAGATCTTCTGGATCGATCTCCCAATGGAGTAATCTATAT
CAGCTGGGGCTCCATGGTAAACAGCAATACACTTCCTTCGGGCAAGCGAA
GTGCGCTTTTCCAAAGCATTTCCCAACTTAAGGAATACAACTTTGTAATG
CGCTGGAAAAGTTTAGAATCTCTGGAAGATAAACAGCCCTCGAACCTCTA
CACTTTCGACTGGCTGCCACAAAGAGATCTTTTGTGTCACCCAAAGATCA
GGGCTTTTATCTCCCATGGCGGACTTTTGGGCACCACGGAGGCGATTCAC
TGTGGAGTTCCCATGCTGGTGACACCTTTCTACGGAGATCAGTTTCTCAA
CTCAGGCGCAGTGAAACAAAGAGGTTTCGGAGTTATCGTTGACTTCAGAG
ACTTCGATTCGAATCACATAACCAGAGGACTTCGTATTATACTTGATAAA
AAATTCGCGGAAAGAGTTAGACGATCCAGCGAAGCATTTCGCCAGCGTCC
CATTCCCCCTATCAAATTGGCCACCTGGTGGATTGAGCATGTCATAAAGT
ATGGGGGAGCTCCACATATCCAAAGTGAAGCCAGACACATAAACTGGATC
GTCTACAATTCCATCGATGTTCTCCTGTTCTGGCTGGGAATCTTATTTCT
ACTGATTGTCGCCCTGCGGAAGCTCATAAAGATATTCAAAACAGCTTTTT
GTCGGGGGAAAATCTCTAGAGATACTAAGACAAAGACGCAAGCAAGCTTT
CTAGACCAT
BO14815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17324-RB | 1578 | CG17324-PB | 1..1575 | 17..1591 | 7875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:12:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17324-RB | 1680 | CG17324-RB | 78..1652 | 17..1591 | 7875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:12:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18821723..18822171 | 854..1302 | 2245 | 100 | Plus |
2L | 23513712 | 2L | 18820570..18820952 | 272..654 | 1915 | 100 | Plus |
2L | 23513712 | 2L | 18822257..18822545 | 1303..1591 | 1445 | 100 | Plus |
2L | 23513712 | 2L | 18820256..18820510 | 17..271 | 1275 | 100 | Plus |
2L | 23513712 | 2L | 18821012..18821214 | 651..853 | 1000 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:12:05 has no hits.
BO14815.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:18 Download gff for
BO14815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-RB | 78..1652 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:47 Download gff for
BO14815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-RB | 78..1652 | 17..1593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:13:27 Download gff for
BO14815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17324-RB | 78..1652 | 17..1593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:13:27 Download gff for
BO14815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18821016..18821214 | 655..853 | 100 | -> | Plus |
2L | 18822257..18822545 | 1303..1593 | 99 | | Plus |
2L | 18821723..18822171 | 854..1302 | 100 | -> | Plus |
2L | 18820256..18820510 | 17..271 | 100 | -> | Plus |
2L | 18820570..18820952 | 272..654 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:47 Download gff for
BO14815.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18820256..18820510 | 17..271 | 100 | -> | Plus |
arm_2L | 18820570..18820952 | 272..654 | 100 | -> | Plus |
arm_2L | 18821016..18821214 | 655..853 | 100 | -> | Plus |
arm_2L | 18821723..18822171 | 854..1302 | 100 | -> | Plus |
arm_2L | 18822257..18822545 | 1303..1593 | 99 | | Plus |
BO14815.pep Sequence
Translation from 16 to 1609
> BO14815.pep
MKLLPLALLAFLLRPKPNDAAHILGLFQHPGKSHFDFFRPMFLALAERGH
NISMYSYFPLEKPVANYTDYVFQGMPLLTDIVDLSNFESEWKPLGLPFKV
PTYFMLHDWGLRSCKVALNSPLITQLLKSPIRYDVILLEHFSNDCMAAVA
HLLNAPVIALSSCAIMPWHYKRMGSPFINPIMPMNFLPYTDEMSLIDRLN
NFFHFHTVNTLYNMITQPATDALIAERFGPGLPPINEIVKNTSLMLINQH
YALTGPRPYAPNVIEVGGLQVGPIKPLPQHLLDLLDRSPNGVIYISWGSM
VNSNTLPSGKRSALFQSISQLKEYNFVMRWKSLESLEDKQPSNLYTFDWL
PQRDLLCHPKIRAFISHGGLLGTTEAIHCGVPMLVTPFYGDQFLNSGAVK
QRGFGVIVDFRDFDSNHITRGLRIILDKKFAERVRRSSEAFRQRPIPPIK
LATWWIEHVIKYGGAPHIQSEARHINWIVYNSIDVLLFWLGILFLLIVAL
RKLIKIFKTAFCRGKISRDTKTKTQASFLDH
BO14815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17324-PB | 525 | CG17324-PB | 1..525 | 1..525 | 2794 | 100 | Plus |
CG17323-PD | 519 | CG17323-PD | 30..519 | 23..519 | 1159 | 43.5 | Plus |
CG17323-PC | 519 | CG17323-PC | 30..519 | 23..519 | 1159 | 43.5 | Plus |
CG17323-PE | 519 | CG17323-PE | 30..519 | 23..519 | 1159 | 43.5 | Plus |
CG17323-PA | 519 | CG17323-PA | 30..519 | 23..519 | 1159 | 43.5 | Plus |