Clone Sequence Records
BO14821.3prime Sequence
829 bp (820 high quality bases) assembled on 2006-06-16
> BO14821.3prime
ATGGTCTAGAAAGCTTGCACTGACGCTTTTCGAATTGCGAAAGTCGAACA
GTTTGGGTATGACATCGCCGCACTTGGCGGATATCTTGATATCCGCCAGG
TGATCGGCGCGCGTTTCGCCAATATTAACAATGCCCACCGGTAGCTTGAG
GTCCTTGGTCTGCAGGACAACGCGGTAGCCGGAGAAGACCAGGAGACTGG
ACCCGAGGACAAGCAGGCCATCGCTATTGTACACCATGCCGGCAATCTGA
TCCACTCGTGGCCGAGGCACAGAATCTCCGAAGAAGACAATTTCCGGCTT
CAAGTCGCCGCCGCACTGCGTACACTCGGGTATCCGGAAGTTCTCGATGT
ACTCCAGCGGTATCTCTACATCGCCATCGGGCCGGATCATGTCGGGGGCA
TCTTTGAAGGCCGGATTTAGCGACGCCAGTATGCTCTGGAACTCGTGACG
ATCGATCCGGTACTCGCATGACAGGCACTTGACCACATAGCCACTGCCAT
GAACCTCCACAACATTTCGGCTGCCCGCCTTCGTGTGCAGCCGGTCCACG
TTCTGGGTGACCACCGCCTGGACCCGCTCCTCCCGCTCGAATCTGGCCAG
CGCGTGATGCGTGGCATTGGGCTGTGTGGCAGAAAACTTGGGCCAGCCCA
CAAAGTTCCTGGCCCAGTACCGCTTGCGCACCGCCGACGACTTGACGAAC
TCCATGTGCTGGACGGGCTTGTGGTTGGAGCGGGCGTAGAGGCCCACGCC
TTCGGAACGGTAATCGGGAATCCCCGATTCCGTCGAGATGCCAGCGCCCG
TGAGAACCAAAACATTCGGTTTGGACAGG
BO14821.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3187-PC | 939 | Sirt4-RC | 29..936 | 926..19 | 4540 | 100 | Minus |
CG3187-PA | 690 | Sirt4-RA | 1..687 | 705..19 | 3435 | 100 | Minus |
CG3187-PB | 690 | Sirt4-RB | 1..687 | 705..19 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirt4-RC | 1112 | CG3187-RC | 198..1008 | 829..19 | 4055 | 100 | Minus |
Sirt4-RB | 1253 | CG3187-RB | 394..1149 | 774..19 | 3780 | 100 | Minus |
Sirt4-RA | 1198 | CG3187-RA | 340..1094 | 773..19 | 3775 | 100 | Minus |
Sirt4-RB | 1253 | CG3187-RB | 198..253 | 829..774 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:56:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5664732..5665487 | 19..774 | 3780 | 100 | Plus |
X | 23542271 | X | 5665687..5665743 | 773..829 | 285 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 10:56:19 has no hits.
BO14821.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:25 Download gff for
BO14821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-PC | 27..939 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:33 Download gff for
BO14821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3187-PC | 27..939 | 15..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:44 Download gff for
BO14821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 198..1011 | 15..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:52:06 Download gff for
BO14821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 198..1011 | 15..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:52:06 Download gff for
BO14821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5664729..5665486 | 15..773 | 99 | <- | Plus |
X | 5665688..5665743 | 774..829 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:44 Download gff for
BO14821.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5558762..5559519 | 15..773 | 99 | <- | Plus |
arm_X | 5559721..5559776 | 774..829 | 100 | | Plus |
BO14821.5prime Sequence
849 bp (808 high quality bases) assembled on 2006-06-16
> BO14821.5prime
GAAGTTATCAGTCGACATGCGTGTGGGCCAGCTGCTCCGCTTCCGGAGCA
CCAGCTTGCGCAGCTCCACCGCCAGGCAGGAGTACGTGCCGCATCACAAG
CCCGTCGTGGAGGACGACATCAAACGGCTGGAGGACTTTCTCCTGTCCAA
ACCGAATGTTTTGGTTCTCACGGGCGCTGGCATCTCGACGGAATCGGGGA
TTCCCGATTACCGTTCCGAAGGCGTGGGCCTCTACGCCCGCTCCAACCAC
AAGCCCGTCCAGCACATGGAGTTCGTCAAGTCGTCGGCGGTGCGCAAGCG
GTACTGGGCCAGGAACTTTGTGGGCTGGCCCAAGTTTTCTGCCACACAGC
CCAATGCCACGCATCACGCGCTGGCCAGATTCGAGCGGGAGGAGCGGGTC
CAGGCGGTGGTCACCCAGAACGTGGACCGGCTGCACACGAAGGCGGGCAG
CCGAAATGTTGTGGAGGTTCATGGCAGTGGCTATGTGGTCAAGTGCCTGT
CATGCGAGTACCGGATCGATCGTCACGAGTTCCAGAGCATACTGGCGTCG
CTAAATCCGGCCTTCAAAGATGCCCCCGACATGATCCGGCCCGATGGCGA
TGTAGAGATACCGCTGGAGTACATCGAGAACTTCCGGATACCCGAGTGTA
CGCAGTGCGGCGGCGACTTGAAGCCGGAAATTGTCTTCTTCGGAGATTCT
GTGCCTCGGCCACGAGTGGATCAGATTGCCGGCATGGTGTACAATAGCGA
TGGCCTGCTTGTCCTCGGGTCCAGTCTCCTGGTCTTCTCCGGCTACCGCG
TTGTCCTGCAGACCAAAGACCTCAAGCTACCGGGTGGGCATTGTTAATA
BO14821.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3187-PC | 939 | Sirt4-RC | 1..817 | 17..833 | 4060 | 99.8 | Plus |
CG3187-PA | 690 | Sirt4-RA | 1..568 | 266..833 | 2815 | 99.8 | Plus |
CG3187-PB | 690 | Sirt4-RB | 1..568 | 266..833 | 2815 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirt4-RC | 1112 | CG3187-RC | 73..904 | 17..849 | 4125 | 99.8 | Plus |
Sirt4-RB | 1253 | CG3187-RB | 394..1045 | 197..849 | 3225 | 99.7 | Plus |
Sirt4-RA | 1198 | CG3187-RA | 340..990 | 198..849 | 3220 | 99.7 | Plus |
Sirt4-RB | 1253 | CG3187-RB | 73..253 | 17..197 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:06:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5664836..5665487 | 849..197 | 3200 | 99.7 | Minus |
X | 23542271 | X | 5665687..5665868 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:06:14 has no hits.
BO14821.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:26 Download gff for
BO14821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-PC | 1..831 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:34 Download gff for
BO14821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3187-PC | 1..831 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:36 Download gff for
BO14821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 73..903 | 17..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:56 Download gff for
BO14821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 73..903 | 17..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:56 Download gff for
BO14821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5664837..5665486 | 198..848 | 99 | <- | Minus |
X | 5665688..5665868 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:36 Download gff for
BO14821.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5558870..5559519 | 198..848 | 99 | <- | Minus |
arm_X | 5559721..5559901 | 17..197 | 100 | | Minus |
BO14821.complete Sequence
970 bp (970 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633253
> BO14821.complete
GAAGTTATCAGTCGACATGCGTGTGGGCCAGCTGCTCCGCTTCCGGAGCA
CCAGCTTGCGCAGCTCCACCGCCAGGCAGGAGTACGTGCCGCATCACAAG
CCCGTCGTGGAGGACGACATCAAACGGCTGGAGGACTTTCTCCTGTCCAA
ACCGAATGTTTTGGTTCTCACGGGCGCTGGCATCTCGACGGAATCGGGGA
TTCCCGATTACCGTTCCGAAGGCGTGGGCCTCTACGCCCGCTCCAACCAC
AAGCCCGTCCAGCACATGGAGTTCGTCAAGTCGTCGGCGGTGCGCAAGCG
GTACTGGGCCAGGAACTTTGTGGGCTGGCCCAAGTTTTCTGCCACACAGC
CCAATGCCACGCATCACGCGCTGGCCAGATTCGAGCGGGAGGAGCGGGTC
CAGGCGGTGGTCACCCAGAACGTGGACCGGCTGCACACGAAGGCGGGCAG
CCGAAATGTTGTGGAGGTTCATGGCAGTGGCTATGTGGTCAAGTGCCTGT
CATGCGAGTACCGGATCGATCGTCACGAGTTCCAGAGCATACTGGCGTCG
CTAAATCCGGCCTTCAAAGATGCCCCCGACATGATCCGGCCCGATGGCGA
TGTAGAGATACCGCTGGAGTACATCGAGAACTTCCGGATACCCGAGTGTA
CGCAGTGCGGCGGCGACTTGAAGCCGGAAATTGTCTTCTTCGGAGATTCT
GTGCCTCGGCCACGAGTGGATCAGATTGCCGGCATGGTGTACAATAGCGA
TGGCCTGCTTGTCCTCGGGTCCAGTCTCCTGGTCTTCTCCGGCTACCGCG
TTGTCCTGCAGACCAAGGACCTCAAGCTACCGGTGGGCATTGTTAATATT
GGCGAAACGCGCGCCGATCACCTGGCGGATATCAAGATATCCGCCAAGTG
CGGCGATGTCATACCCAAACTGTTCGACTTTCGCAATTCGAAAAGCGTCA
GTGCAAGCTTTCTAGACCAT
BO14821.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:03:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirt4-RC | 939 | CG3187-PC | 1..936 | 17..952 | 4680 | 100 | Plus |
Sirt4-RB | 690 | CG3187-PB | 1..687 | 266..952 | 3435 | 100 | Plus |
Sirt4-RA | 690 | CG3187-PA | 1..687 | 266..952 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirt4-RC | 1112 | CG3187-RC | 73..1008 | 17..952 | 4680 | 100 | Plus |
Sirt4-RB | 1253 | CG3187-RB | 394..1149 | 197..952 | 3780 | 100 | Plus |
Sirt4-RA | 1198 | CG3187-RA | 340..1094 | 198..952 | 3775 | 100 | Plus |
Sirt4-RB | 1253 | CG3187-RB | 73..253 | 17..197 | 905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:03:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5664732..5665487 | 952..197 | 3780 | 100 | Minus |
X | 23542271 | X | 5665687..5665868 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:03:34 has no hits.
BO14821.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:33 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 1..939 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:20 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 102..1040 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:45 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 73..1008 | 17..954 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:33 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 102..1040 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:56 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Sirt4-RC | 73..1008 | 17..954 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:56 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5664730..5665486 | 198..954 | 99 | <- | Minus |
X | 5665688..5665868 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:45 Download gff for
BO14821.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5558763..5559519 | 198..954 | 99 | <- | Minus |
arm_X | 5559721..5559901 | 17..197 | 100 | | Minus |
BO14821.pep Sequence
Translation from 16 to 970
> BO14821.pep
MRVGQLLRFRSTSLRSSTARQEYVPHHKPVVEDDIKRLEDFLLSKPNVLV
LTGAGISTESGIPDYRSEGVGLYARSNHKPVQHMEFVKSSAVRKRYWARN
FVGWPKFSATQPNATHHALARFEREERVQAVVTQNVDRLHTKAGSRNVVE
VHGSGYVVKCLSCEYRIDRHEFQSILASLNPAFKDAPDMIRPDGDVEIPL
EYIENFRIPECTQCGGDLKPEIVFFGDSVPRPRVDQIAGMVYNSDGLLVL
GSSLLVFSGYRVVLQTKDLKLPVGIVNIGETRADHLADIKISAKCGDVIP
KLFDFRNSKSVSASFLDH
BO14821.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Sirt4-PC | 312 | CG3187-PC | 1..312 | 1..312 | 1620 | 100 | Plus |
Sirt4-PB | 229 | CG3187-PB | 1..229 | 84..312 | 1195 | 100 | Plus |
Sirt4-PA | 229 | CG3187-PA | 1..229 | 84..312 | 1195 | 100 | Plus |
Sir2-PA | 823 | CG5216-PA | 224..432 | 48..256 | 196 | 29.6 | Plus |