Clone Sequence Records
BO14822.3prime Sequence
918 bp (785 high quality bases) assembled on 2006-06-16
> BO14822.3prime
ATGGTCTAGAAAGCTTGCATCCTTAAAGGCCTCATTAAGAGCCGCCAGAT
TGCGATCGCTCACATAACTCTGGAGATCGCTGCGGCCCATCAGCGAAATG
ACCATCTTCAGCGTACTCCAAATAGACTCGGACATCTGGTTCTGTCCTCT
AAAGGTAGCCGCCATCGCCGCATTGGGCAGCTCTCGGGCGGCGTTAGTGT
GAGCCTGCATGGTAAGCGCTGTGAGTAAGTGCTCCACAGCTTCCTTGTAG
GCCTTAAGGTTCATGCAACATACGCCCACGTTGTAACGCACACGGATGAA
GCCCGGTTGGAGCTGCAGCGCCTGCTGATAAGCCTCCACCGCCTCCACGG
AGCGCGAGCCGTTGGCCAAACTGGCCCCCAATCGGTTCCATGTCTTCGCA
TTTTGGGGATCCACCTGCAGAGCGGACTGGTAGCAGTCCACCGCCTTGTC
GAACTCCCCAGATAGATTGTAGAGCACGCCGAGGGCATCCTGGACTTCGG
CATCCACCTCCGAAGGGTGCTGTCGAACGGCTTCCAAGTAGATCTGCTGC
AGATCGCGCAGCTTACTCGGACCAATCAGCGACGAAGCCAACGAAGTGCC
CTCGGCCTGCAGCTCCGGATGGGCTGCGACCAGGTGCTGATACTTGGGAT
GCACTGTCAGCCAGTTGCACAGCATGCGCACGGCGTTGTTCTGCAGGCCC
TCGTTGGTGTAGCACGCGGCCAGGGCCATCAGGACCTGTTGGTTGTCCGG
TTGCAAGTCGTAAGCCCGCTTAAGTGCCGCAATGGCCTGGGGATCCATTT
CGTTCTCTGTCTGCGAAGTGCCCAGCAACTGCCAGACCTCAGCGCGCTCC
GGTTGCTTTTTGGCCGCCACCTCGAAACATAGAACTGCGCTGGGTATATC
CCCTTTGGACAGGTACTC
BO14822.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14815-PA | 1845 | CG14815-RA | 943..1842 | 918..19 | 4500 | 100 | Minus |
| CG14815-PB | 1680 | CG14815-RB | 778..1677 | 918..19 | 4500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex5-RB | 1972 | CG14815-RB | 894..1793 | 918..19 | 4500 | 100 | Minus |
| Pex5-RA | 2158 | CG14815-RA | 1080..1979 | 918..19 | 4500 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1867011..1867910 | 19..918 | 4500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:06:13 has no hits.
BO14822.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:27 Download gff for
BO14822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-PA | 943..1845 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:36 Download gff for
BO14822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-PB | 778..1680 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:09 Download gff for
BO14822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 1080..1982 | 15..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:33 Download gff for
BO14822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 1080..1982 | 15..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:33 Download gff for
BO14822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1867008..1867910 | 15..918 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:09 Download gff for
BO14822.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1761041..1761943 | 15..918 | 99 | | Plus |
BO14822.5prime Sequence
874 bp (826 high quality bases) assembled on 2006-06-16
> BO14822.5prime
GAAGTTATCAGTCGACATGGTGCAGTCGGGGATTTGGCGTTCGAAACCAA
TTCTCTGGCGGATAAGATTTTGCGCGGCGATATATTTTATTATTATTAGA
GCGCTGTGCAACACTGTCACAAAGCCGATAGCTTCGATAACGGCCGATAA
ACAGTTACGTAGCATCTCCACTTCGAACACCATGTCTTTCCGCCCATTGG
TCGAGGGCGACTGCGGTGGAGTTAATCCTCTCATGCAACTGGGCGGACAG
TTCACCCGCGATGTTGCCCACAAGGATGAGGGCTATGTGCAGCGACACTT
CGAGCGCGCTGCTCGTCCCGAGGACCAGTTGATCAACGAGTTCCTGGGAC
AGGTCACTGCCCCACCGCAGTCATTTCAGATGGACACTCTGCTCCAGGAG
ATGCGGGACATAAATATTCACGGAAATCCGCAGCAGCAGATGCACTCTCA
GCAGGCGGAGCAGTGGGGACAGGACTTTGCCCGCGGACTGGCACCCGCCC
TGCCCAACAAGATGATCCACATGCAGGCACAGCAGCAGGACCTGCAGCAT
GCCCAGGAGTTCTTCGACGAGCCCCTGATCAGTAGCCAGAACTTTCGGTC
CCTGCCGCCATTGCGTCAGCCTTTGATGCCCATTGCGGCAGGACAGCAAC
AGGACCCCTTCTTTGACTCCGCCATGGAAACTATAATCACAGATCATCTG
CCACAGGCGCCACAGGGGGAATCGCTGGACGACTGGATCAGCGACTACCA
GCGCAGCACCGAACAAAAAGAGCAAACCGCCGCCAACTTCAACGAAAAGT
TCTGGGAGCGGCTGCAAGACGAGTGGCAGAAGCTGGCCGACGAGAACGAG
CATCCGTGGCTGTCGGAGTACAAC
BO14822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14815-PA | 1845 | CG14815-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
| CG14815-PB | 1680 | CG14815-RB | 1..693 | 182..874 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex5-RA | 2158 | CG14815-RA | 137..995 | 16..874 | 4295 | 100 | Plus |
| Pex5-RB | 1972 | CG14815-RB | 87..809 | 152..874 | 3615 | 100 | Plus |
| CG14803-RB | 3404 | CG14803-RB | 1..56 | 71..16 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1867995..1868717 | 874..152 | 3615 | 100 | Minus |
| X | 23542271 | X | 1868787..1868925 | 154..16 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:55:55 has no hits.
BO14822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:28 Download gff for
BO14822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:38 Download gff for
BO14822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-PA | 1..858 | 17..874 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:52:13 Download gff for
BO14822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 128..995 | 4..874 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:18 Download gff for
BO14822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 128..995 | 4..874 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:18 Download gff for
BO14822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1867995..1868714 | 155..874 | 100 | <- | Minus |
| X | 1868787..1868934 | 4..154 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:52:13 Download gff for
BO14822.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1762028..1762747 | 155..874 | 100 | <- | Minus |
| arm_X | 1762820..1762967 | 4..154 | 96 | | Minus |
BO14822.complete Sequence
1876 bp (1876 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633254
> BO14822.complete
GAAGTTATCAGTCGACATGGTGCAGTCGGGGATTTGGCGTTCGAAACCAA
TTCTCTGGCGGATAAGATTTTGCGCGGCGATATATTTTATTATTATTAGA
GCGCTGTGCAACACTGTCACAAAGCCGATAGCTTCGATAACGGCCGATAA
ACAGTTACGTAGCATCTCCACTTCGAACACCATGTCTTTCCGCCCATTGG
TCGAGGGCGACTGCGGTGGAGTTAATCCTCTCATGCAACTGGGCGGACAG
TTCACCCGCGATGTTGCCCACAAGGATGAGGGCTATGTGCAGCGACACTT
CGAGCGCGCTGCTCGTCCCGAGGACCAGTTGATCAACGAGTTCCTGGGAC
AGGTCACTGCCCCACCGCAGTCATTTCAGATGGACACTCTGCTCCAGGAG
ATGCGGGACATAAATATTCACGGAAATCCGCAGCAGCAGATGCACTCTCA
GCAGGCGGAGCAGTGGGGACAGGACTTTGCCCGCGGACTGGCACCCGCCC
TGCCCAACAAGATGATCCACATGCAGGCACAGCAGCAGGACCTGCAGCAT
GCCCAGGAGTTCTTCGACGAGCCCCTGATCAGTAGCCAGAACTTTCGGTC
CCTGCCGCCATTGCGTCAGCCTTTGATGCCCATTGCGGCAGGACAGCAAC
AGGACCCCTTCTTTGACTCCGCCATGGAAACTATAATCACAGATCATCTG
CCACAGGCGCCACAGGGGGAATCGCTGGACGACTGGATCAGCGACTACCA
GCGCAGCACCGAACAAAAAGAGCAAACCGCCGCCAACTTCAACGAAAAGT
TCTGGGAGCGGCTGCAAGACGAGTGGCAGAAGCTGGCCGACGAGAACGAG
CATCCGTGGCTGTCGGAGTACAACGACAATATGGACGCTTATAAGGAGTA
CGAGTTCGCCGAGGGCAACCCCATGTCTGATGTGGAGAACCCGTTTGAAA
AGGGTAAGGAGTACCTGTCCAAAGGGGATATACCCAGCGCAGTTCTATGT
TTCGAGGTGGCGGCCAAAAAGCAACCGGAGCGCGCTGAGGTCTGGCAGTT
GCTGGGCACTTCGCAGACAGAGAACGAAATGGATCCCCAGGCCATTGCGG
CACTTAAGCGGGCTTACGACTTGCAACCGGACAACCAACAGGTCCTGATG
GCCCTGGCCGCGTGCTACACCAACGAGGGCCTGCAGAACAACGCCGTGCG
CATGCTGTGCAACTGGCTGACAGTGCATCCCAAGTATCAGCACCTGGTCG
CAGCCCATCCGGAGCTGCAGGCCGAGGGCACTTCGTTGGCTTCGTCGCTG
ATTGGTCCGAGTAAGCTGCGCGATCTGCAGCAGATCTACTTGGAAGCCGT
TCGACAGCACCCTTCGGAGGTGGATGCCGAAGTCCAGGATGCCCTCGGCG
TGCTCTACAATCTATCTGGGGAGTTCGACAAGGCGGTGGACTGCTACCAG
TCCGCTCTGCAGGTGGATCCCCAAAATGCGAAGACATGGAACCGATTGGG
GGCCAGTTTGGCCAACGGCTCGCGCTCCGTGGAGGCGGTGGAGGCTTATC
AGCAGGCGCTGCAGCTCCAACCGGGCTTCATCCGTGTGCGTTACAACGTG
GGCGTATGTTGCATGAACCTTAAGGCCTACAAGGAAGCTGTGGAGCACTT
ACTCACAGCGCTTACCATGCAGGCTCACACTAACGCCGCCCGAGAGCTGC
CCAATGCGGCGATGGCGGCTACCTTTAGAGGACAGAACCAGATGTCCGAG
TCTATTTGGAGTACGCTGAAGATGGTCATTTCGCTGATGGGCCGCAGCGA
TCTCCAGAGTTATGTGAGCGATCGCAATCTGGCGGCTCTTAATGAGGCCT
TTAAGGATGCAAGCTTTCTAGACCAT
BO14822.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex5-RA | 1845 | CG14815-PA | 1..1842 | 17..1858 | 9210 | 100 | Plus |
| Pex5-RB | 1680 | CG14815-PB | 1..1677 | 182..1858 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex5-RA | 2158 | CG14815-RA | 137..1979 | 16..1858 | 9215 | 100 | Plus |
| Pex5-RB | 1972 | CG14815-RB | 87..1793 | 152..1858 | 8535 | 100 | Plus |
| CG14803-RB | 3404 | CG14803-RB | 1..56 | 71..16 | 280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1867011..1868717 | 1858..152 | 8535 | 100 | Minus |
| X | 23542271 | X | 1868787..1868925 | 154..16 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:34 has no hits.
BO14822.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:56 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-RA | 1..1845 | 17..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:26 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-RA | 128..1982 | 4..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:33:51 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 138..1979 | 17..1860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:56 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14815-RA | 128..1982 | 4..1862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:28 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pex5-RA | 138..1979 | 17..1860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:28 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1867009..1868714 | 155..1860 | 99 | <- | Minus |
| X | 1868787..1868924 | 17..154 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:33:51 Download gff for
BO14822.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1761042..1762747 | 155..1860 | 99 | <- | Minus |
| arm_X | 1762820..1762957 | 17..154 | 100 | | Minus |
BO14822.pep Sequence
Translation from 16 to 1876
> BO14822.pep
MVQSGIWRSKPILWRIRFCAAIYFIIIRALCNTVTKPIASITADKQLRSI
STSNTMSFRPLVEGDCGGVNPLMQLGGQFTRDVAHKDEGYVQRHFERAAR
PEDQLINEFLGQVTAPPQSFQMDTLLQEMRDINIHGNPQQQMHSQQAEQW
GQDFARGLAPALPNKMIHMQAQQQDLQHAQEFFDEPLISSQNFRSLPPLR
QPLMPIAAGQQQDPFFDSAMETIITDHLPQAPQGESLDDWISDYQRSTEQ
KEQTAANFNEKFWERLQDEWQKLADENEHPWLSEYNDNMDAYKEYEFAEG
NPMSDVENPFEKGKEYLSKGDIPSAVLCFEVAAKKQPERAEVWQLLGTSQ
TENEMDPQAIAALKRAYDLQPDNQQVLMALAACYTNEGLQNNAVRMLCNW
LTVHPKYQHLVAAHPELQAEGTSLASSLIGPSKLRDLQQIYLEAVRQHPS
EVDAEVQDALGVLYNLSGEFDKAVDCYQSALQVDPQNAKTWNRLGASLAN
GSRSVEAVEAYQQALQLQPGFIRVRYNVGVCCMNLKAYKEAVEHLLTALT
MQAHTNAARELPNAAMAATFRGQNQMSESIWSTLKMVISLMGRSDLQSYV
SDRNLAALNEAFKDASFLDH
BO14822.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pex5-PA | 614 | CG14815-PA | 1..614 | 1..614 | 3213 | 100 | Plus |
| Pex5-PB | 559 | CG14815-PB | 1..559 | 56..614 | 2932 | 100 | Plus |
| sxc-PB | 1059 | CG10392-PB | 227..465 | 313..558 | 167 | 24.7 | Plus |
| sxc-PA | 1059 | CG10392-PA | 227..465 | 313..558 | 167 | 24.7 | Plus |
| sxc-PC | 1059 | CG10392-PC | 227..465 | 313..558 | 167 | 24.7 | Plus |
