Clone Sequence Records
BO14831.3prime Sequence
599 bp (599 high quality bases) assembled on 2006-06-16
> BO14831.3prime
ATGGTCTAGAAAGCTTGCGATCTTAATGGTCTGGGCCATTGCCATTCGTT
CCTGAATTTCCTCTGCGGGATGTGGCTGCTGCTCTGGGAGAGCCTCGGAC
TGGATCCGAGGTTTGGGATCTCCGTCGATCTGCATCTGATACATAACGGT
TGCTATAATCAGACTAAAGTGCAGCATGGTCAACAGGAATCCGAAAAGGA
CAAGAGAAGCGTAGTAGCTCCAGCATAGGTCGCTCCACCACAAGTGCCAC
ACCATCTTCAGGTGGAAAGCAGCCAGACACTGGTGAAGGTAGCAGTTCCA
CATGAGAACAATCGCCACCAGCAAGGAGATGTGATAGATCTGAAAAAATG
CGGGGAGAAGCAGTAAGATGTTTACATATAGGTTAAAGTCCCACATGCTT
TCCCCGAACTCCACTCCATAATTGGTTTCCGGTTGTAACGGAGCGAACAT
CTGGCCGATAATAGGAATATTCTGCCAAAGACTTGTCTGGGCTGTAGAAA
CATTTATGATTCGATTGATTTCCATGCTTATGTAACCTACAAGTACGTTG
TACACAAGCAAGTTTAGAGCAGGCATAAAAATCATGTCGACTGATAACT
BO14831.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-PA | 570 | CG11404-RA | 1..564 | 585..22 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 806 | CG11404-RA | 22..590 | 587..19 | 2845 | 100 | Minus |
CG11404-RB | 797 | CG11404-RB | 22..581 | 587..19 | 2700 | 98.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22548803..22549126 | 342..19 | 1620 | 100 | Minus |
3L | 28110227 | 3L | 22548591..22548752 | 501..340 | 810 | 100 | Minus |
3L | 28110227 | 3L | 22548458..22548544 | 587..501 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:34:56 has no hits.
BO14831.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:34 Download gff for
BO14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:46 Download gff for
BO14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-PA | 1..570 | 15..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:04:05 Download gff for
BO14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..593 | 15..597 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:56:36 Download gff for
BO14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..593 | 15..597 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:56:36 Download gff for
BO14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22548447..22548544 | 501..597 | 95 | -> | Minus |
3L | 22548592..22548752 | 340..500 | 100 | -> | Minus |
3L | 22548806..22549129 | 15..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:04:05 Download gff for
BO14831.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22541547..22541644 | 501..597 | 95 | -> | Minus |
arm_3L | 22541692..22541852 | 340..500 | 100 | -> | Minus |
arm_3L | 22541906..22542229 | 15..339 | 99 | | Minus |
BO14831.5prime Sequence
599 bp (599 high quality bases) assembled on 2006-06-16
> BO14831.5prime
GAAGTTATCAGTCGACATGATTTTTATGCCTGCTCTAAACTTGCTTGTGT
ACAACGTACTTGTAGGTTACATAAGCATGGAAATCAATCGAATCATAAAT
GTTTCTACAGCCCAGACAAGTCTTTGGCAGAATATTCCTATTATCGGCCA
GATGTTCGCTCCGTTACAACCGGAAACCAATTATGGAGTGGAGTTCGGGG
AAAGCATGTGGGACTTTAACCTATATGTAAACATCTTACTGCTTCTCCCC
GCATTTTTTCAGATCTATCACATCTCCTTGCTGGTGGCGATTGTTCTCAT
GTGGAACTGCTACCTTCACCAGTGTCTGGCTGCTTTCCACCTGAAGATGG
TGTGGCACTTGTGGTGGAGCGACCTATGCTGGAGCTACTACGCTTCTCTT
GTCCTTTTCGGATTCCTGTTGACCATGCTGCACTTTAGTCTGATTATAGC
AACCGTTATGTATCAGATGCAGATCGACGGAGATCCCAAACCTCGGATCC
AGTCCGAGGCTCTCCCAGAGCAGCAGCCACATCCCGCAGAGGAAATTCAG
GAACGAATGGCAATGGCCCAGACCATTAAGATCGCAAGCTTTCTAGACC
BO14831.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-PA | 570 | CG11404-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:58:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 806 | CG11404-RA | 22..590 | 15..583 | 2845 | 100 | Plus |
CG11404-RB | 797 | CG11404-RB | 22..581 | 15..583 | 2700 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:57:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22548803..22549126 | 260..583 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 22548591..22548752 | 101..262 | 810 | 100 | Plus |
3L | 28110227 | 3L | 22548458..22548544 | 15..101 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:58:02 has no hits.
BO14831.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:35 Download gff for
BO14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:47 Download gff for
BO14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-PA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:30 Download gff for
BO14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..593 | 5..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:32:30 Download gff for
BO14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..593 | 5..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:32:30 Download gff for
BO14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22548447..22548544 | 5..101 | 95 | -> | Plus |
3L | 22548592..22548752 | 102..262 | 100 | -> | Plus |
3L | 22548806..22549129 | 263..587 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:30 Download gff for
BO14831.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22541547..22541644 | 5..101 | 95 | -> | Plus |
arm_3L | 22541692..22541852 | 102..262 | 100 | -> | Plus |
arm_3L | 22541906..22542229 | 263..587 | 99 | | Plus |
BO14831.complete Sequence
601 bp (601 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633255
> BO14831.complete
GAAGTTATCAGTCGACATGATTTTTATGCCTGCTCTAAACTTGCTTGTGT
ACAACGTACTTGTAGGTTACATAAGCATGGAAATCAATCGAATCATAAAT
GTTTCTACAGCCCAGACAAGTCTTTGGCAGAATATTCCTATTATCGGCCA
GATGTTCGCTCCGTTACAACCGGAAACCAATTATGGAGTGGAGTTCGGGG
AAAGCATGTGGGACTTTAACCTATATGTAAACATCTTACTGCTTCTCCCC
GCATTTTTTCAGATCTATCACATCTCCTTGCTGGTGGCGATTGTTCTCAT
GTGGAACTGCTACCTTCACCAGTGTCTGGCTGCTTTCCACCTGAAGATGG
TGTGGCACTTGTGGTGGAGCGACCTATGCTGGAGCTACTACGCTTCTCTT
GTCCTTTTCGGATTCCTGTTGACCATGCTGCACTTTAGTCTGATTATAGC
AACCGTTATGTATCAGATGCAGATCGACGGAGATCCCAAACCTCGGATCC
AGTCCGAGGCTCTCCCAGAGCAGCAGCCACATCCCGCAGAGGAAATTCAG
GAACGAATGGCAATGGCCCAGACCATTAAGATCGCAAGCTTTCTAGACCA
T
BO14831.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:35:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 570 | CG11404-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
CG11404-RB | 561 | CG11404-PB | 1..558 | 17..583 | 2665 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:35:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-RA | 806 | CG11404-RA | 22..590 | 15..583 | 2845 | 100 | Plus |
CG11404-RB | 797 | CG11404-RB | 22..581 | 15..583 | 2675 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:35:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 22548803..22549126 | 260..583 | 1620 | 100 | Plus |
3L | 28110227 | 3L | 22548591..22548752 | 101..262 | 810 | 100 | Plus |
3L | 28110227 | 3L | 22548458..22548544 | 15..101 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:35:31 has no hits.
BO14831.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:34 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:22 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..593 | 5..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:38 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 24..590 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:34 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 11..593 | 5..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:32 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11404-RA | 24..590 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:32 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 22548460..22548544 | 17..101 | 100 | -> | Plus |
3L | 22548592..22548752 | 102..262 | 100 | -> | Plus |
3L | 22548806..22549126 | 263..585 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:38 Download gff for
BO14831.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 22541560..22541644 | 17..101 | 100 | -> | Plus |
arm_3L | 22541692..22541852 | 102..262 | 100 | -> | Plus |
arm_3L | 22541906..22542226 | 263..585 | 99 | | Plus |
BO14831.pep Sequence
Translation from 16 to 601
> BO14831.pep
MIFMPALNLLVYNVLVGYISMEINRIINVSTAQTSLWQNIPIIGQMFAPL
QPETNYGVEFGESMWDFNLYVNILLLLPAFFQIYHISLLVAIVLMWNCYL
HQCLAAFHLKMVWHLWWSDLCWSYYASLVLFGFLLTMLHFSLIIATVMYQ
MQIDGDPKPRIQSEALPEQQPHPAEEIQERMAMAQTIKIASFLDH
BO14831.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11404-PA | 189 | CG11404-PA | 1..189 | 1..189 | 1005 | 100 | Plus |
CG11404-PB | 186 | CG11404-PB | 1..186 | 1..189 | 978 | 98.4 | Plus |