Clone BO14834 Report

Search the DGRC for BO14834

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:34
Vector:pDNR-Dual
Associated Gene/Transcripttow-RA
Protein status:BO14834.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO14834.3prime Sequence

887 bp (829 high quality bases) assembled on 2006-06-16

> BO14834.3prime
ATGGTCTAGAAAGCTTGCCGAGAGTTCCTGCGAGAACTGCGTCTCCAGGG
TGGGTCTAGTTCTAGTGGGGTTCCTGCTGGGATTGCGTATCGGTGGTCCT
GGGCTGCCATAGCCCGCCGCATACAGCTGCGGGCACGAGTCTTTTATGAG
TTCCTGCGTCTCGCGCAACTGCCGCTGCACCTGCGGCGCCAGTCTCTGCA
CGCTGATGGCCGGCGGGAACTTGTATTCCGCCGCTGGAGCGGCCTGTACG
CCGTGCATCATCTCGCCGTAGTAGGCGCCCGGCGGAGGAGGCGGTGGCTG
TTGCTGCTGGATTTGGCTGTGTGGAGCGGTTGGCGGTTCGTAAGTTTCGG
GGGCGTTGCATTTGATGCCAGTTGCACAGAGGAGAGTGGTTGCAGCGGGT
CCACCATAGATCAGGCGCTTTGGACTCACGCTCTGGGGCTTTGATCCGGC
GGGAAGGGTCAGCAGGTATTGCTGTTGCTGCTGCTGGTAAAGTTGCTGCT
GCTGCTGCTGATTGAGTTGCAGCTGCTGTTGCTGCTGCAGCTGTAGCTGT
TGTTGCTGCTGTTGATGCTGCTGCTGCAACTGGACGAGCTGTGCCGCTGC
TGCTGCCGTGGACGTGTTGACAACATTAGGATCCAACTGGGGCAGCAGTA
TTAGTTGCTGCTGCTGCTGCTGGTAGAGCACTGCCGCCTGTTGCTGCTGC
TGTTGTTGCTGCTGCTGCACCACTTGCCGTCCCGTCAACACATGCTGAGG
TAGATACTCCGTCGTGGGCAGCGCGACTATCGTCGATGAGGAGGAGGAGG
AGGTGGAGGCGGTGACCGCCGAAGCGCTAGAAGGCTGAATCAGCAGGCCG
GCGCCACGCGGTGGCTGCTTCAATGGCACCTGCACCT

BO14834.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG14821-PA 1044 CG14821-RA 173..1041 887..19 4320 99.8 Minus
CG14459-PA 483 CG14459-RA 171..218 577..530 165 93.7 Minus
CG3978-PB 1467 pnr-RB 882..935 577..524 145 90.7 Minus
CG3978-PA 1623 pnr-RA 1038..1091 577..524 145 90.7 Minus
CG7391-PF 2886 Clk-RF 2208..2261 577..524 145 90.7 Minus
CG7391-PB 3072 Clk-RB 2394..2447 577..524 145 90.7 Minus
CG7391-PA 3072 Clk-RA 2394..2447 577..524 145 90.7 Minus
CG7391-PC 3084 Clk-RC 2406..2459 577..524 145 90.7 Minus
CG7391-PD 3084 Clk-RD 2406..2459 577..524 145 90.7 Minus
CG8118-PA 4785 mam-RA 2400..2447 577..530 140 91.6 Minus
CG8118-PB 4785 mam-RB 2400..2447 577..530 140 91.6 Minus
CG1343-PB 1563 Sp1-RB 1320..1346 577..551 135 100 Minus
CG1343-PA 2076 Sp1-RA 1833..1859 577..551 135 100 Minus
CG6619-PA 2601 CG6619-RA 1629..1690 577..516 135 88.7 Minus
CG14442-PA 3105 CG14442-RA 963..994 577..546 135 96.8 Minus
CG7015-PA 3120 CG7015-RA 189..220 577..546 135 96.8 Minus
CG2904-PA 5139 ec-RA 4362..4393 577..546 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:45
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1988 CG14821-RF 960..1828 887..19 4330 99.9 Minus
tow-RD 2654 CG14821-RD 975..1843 887..19 4330 99.9 Minus
tow-RC 1508 CG14821-RC 480..1348 887..19 4330 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6947396..6947915 887..368 2585 99.8 Minus
3L 28110227 3L 6948275..6948502 246..19 1140 100 Minus
3L 28110227 3L 6947985..6948110 368..243 630 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:43:44 has no hits.

BO14834.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:39 Download gff for BO14834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14821-PA 173..1044 16..887 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:53 Download gff for BO14834.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14821-PA 173..1044 16..887 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:59 Download gff for BO14834.3prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 480..1356 12..887 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:45 Download gff for BO14834.3prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 480..1356 12..887 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:45 Download gff for BO14834.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6947396..6947915 368..887 99 -> Minus
3L 6947986..6948109 244..367 100 -> Minus
3L 6948278..6948510 12..243 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:59 Download gff for BO14834.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6940496..6941015 368..887 99 -> Minus
arm_3L 6941086..6941209 244..367 100 -> Minus
arm_3L 6941378..6941610 12..243 98   Minus

BO14834.5prime Sequence

866 bp (790 high quality bases) assembled on 2006-06-16

> BO14834.5prime
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGG

BO14834.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG14821-PA 1044 CG14821-RA 1..850 17..866 4250 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:29
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1988 CG14821-RF 787..1637 16..866 4255 100 Plus
tow-RD 2654 CG14821-RD 802..1652 16..866 4255 100 Plus
tow-RC 1508 CG14821-RC 307..1157 16..866 4255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6947246..6947915 39..708 3350 100 Plus
3L 28110227 3L 6947985..6948110 708..833 630 100 Plus
3L 28110227 3L 6948275..6948311 830..866 185 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:46:26 has no hits.

BO14834.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:40 Download gff for BO14834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14821-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:54 Download gff for BO14834.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14821-PA 1..850 17..866 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:06 Download gff for BO14834.5prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 300..1157 8..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:18:59 Download gff for BO14834.5prime
Subject Subject Range Query Range Percent Splice Strand
tow-RC 300..1157 8..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:18:59 Download gff for BO14834.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6947248..6947915 41..708 100 -> Plus
3L 6947986..6948109 709..832 100 -> Plus
3L 6948278..6948311 833..866 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:06 Download gff for BO14834.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6940348..6941015 41..708 100 -> Plus
arm_3L 6941086..6941209 709..832 100 -> Plus
arm_3L 6941378..6941411 833..866 100   Plus

BO14834.complete Sequence

1075 bp (1075 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633257

> BO14834.complete
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCGCAGGTGCA
GCGGCAGTTGCGCGAGACGCAGGAACTCATAAAAGACTCGTGCCCGCAGC
TGTATGCGGCGGGCTATGGCAGCCCAGGACCACCGATACGCAATCCCAGC
AGGAACCCCACTAGAACTAGACCCACCCTGGAGACGCAGTTCTCGCAGGA
ACTCTCGGCAAGCTTTCTAGACCAT

BO14834.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1326 CG14821-PF 282..1323 16..1057 5210 100 Plus
tow-RD 1341 CG14821-PD 297..1338 16..1057 5210 100 Plus
tow-RC 1341 CG14821-PC 297..1338 16..1057 5210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:19
Subject Length Description Subject Range Query Range Score Percent Strand
tow-RF 1988 CG14821-RF 787..1828 16..1057 5210 100 Plus
tow-RD 2654 CG14821-RD 802..1843 16..1057 5210 100 Plus
tow-RC 1508 CG14821-RC 307..1348 16..1057 5210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6947246..6947915 39..708 3350 100 Plus
3L 28110227 3L 6948275..6948502 830..1057 1140 100 Plus
3L 28110227 3L 6947985..6948110 708..833 630 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:10:17 has no hits.

BO14834.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:35 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 290..1341 8..1060 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:23 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 290..1346 8..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:58 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 308..1348 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:35 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 290..1346 8..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:25 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
tow-RC 308..1348 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:25 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6946535..6946558 17..40 100 -> Plus
3L 6947248..6947915 41..708 100 -> Plus
3L 6947986..6948109 709..832 100 -> Plus
3L 6948278..6948502 833..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:58 Download gff for BO14834.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6939635..6939658 17..40 100 -> Plus
arm_3L 6940348..6941015 41..708 100 -> Plus
arm_3L 6941086..6941209 709..832 100 -> Plus
arm_3L 6941378..6941602 833..1059 99   Plus

BO14834.pep Sequence

Translation from 16 to 1075

> BO14834.pep
MLDKKIDEGPDYDSASETEIALEEARLNALRQHWESASITASICSSASRS
LQTTPIRQVQVPLKQPPRGAGLLIQPSSASAVTASTSSSSSSTIVALPTT
EYLPQHVLTGRQVVQQQQQQQQQQAAVLYQQQQQQLILLPQLDPNVVNTS
TAAAAAQLVQLQQQHQQQQQQLQLQQQQQLQLNQQQQQQLYQQQQQQYLL
TLPAGSKPQSVSPKRLIYGGPAATTLLCATGIKCNAPETYEPPTAPHSQI
QQQQPPPPPPGAYYGEMMHGVQAAPAAEYKFPPAISVQRLAPQVQRQLRE
TQELIKDSCPQLYAAGYGSPGPPIRNPSRNPTRTRPTLETQFSQELSASF
LDH

BO14834.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:14
Subject Length Description Subject Range Query Range Score Percent Strand
tow-PF 441 CG14821-PF 95..441 1..347 1767 100 Plus
tow-PD 446 CG14821-PD 100..446 1..347 1767 100 Plus
tow-PC 446 CG14821-PC 100..446 1..347 1767 100 Plus
tow-PG 446 CG14821-PG 95..446 1..347 1751 98.6 Plus
tow-PE 451 CG14821-PE 100..451 1..347 1751 98.6 Plus