Clone Sequence Records
BO14834.3prime Sequence
887 bp (829 high quality bases) assembled on 2006-06-16
> BO14834.3prime
ATGGTCTAGAAAGCTTGCCGAGAGTTCCTGCGAGAACTGCGTCTCCAGGG
TGGGTCTAGTTCTAGTGGGGTTCCTGCTGGGATTGCGTATCGGTGGTCCT
GGGCTGCCATAGCCCGCCGCATACAGCTGCGGGCACGAGTCTTTTATGAG
TTCCTGCGTCTCGCGCAACTGCCGCTGCACCTGCGGCGCCAGTCTCTGCA
CGCTGATGGCCGGCGGGAACTTGTATTCCGCCGCTGGAGCGGCCTGTACG
CCGTGCATCATCTCGCCGTAGTAGGCGCCCGGCGGAGGAGGCGGTGGCTG
TTGCTGCTGGATTTGGCTGTGTGGAGCGGTTGGCGGTTCGTAAGTTTCGG
GGGCGTTGCATTTGATGCCAGTTGCACAGAGGAGAGTGGTTGCAGCGGGT
CCACCATAGATCAGGCGCTTTGGACTCACGCTCTGGGGCTTTGATCCGGC
GGGAAGGGTCAGCAGGTATTGCTGTTGCTGCTGCTGGTAAAGTTGCTGCT
GCTGCTGCTGATTGAGTTGCAGCTGCTGTTGCTGCTGCAGCTGTAGCTGT
TGTTGCTGCTGTTGATGCTGCTGCTGCAACTGGACGAGCTGTGCCGCTGC
TGCTGCCGTGGACGTGTTGACAACATTAGGATCCAACTGGGGCAGCAGTA
TTAGTTGCTGCTGCTGCTGCTGGTAGAGCACTGCCGCCTGTTGCTGCTGC
TGTTGTTGCTGCTGCTGCACCACTTGCCGTCCCGTCAACACATGCTGAGG
TAGATACTCCGTCGTGGGCAGCGCGACTATCGTCGATGAGGAGGAGGAGG
AGGTGGAGGCGGTGACCGCCGAAGCGCTAGAAGGCTGAATCAGCAGGCCG
GCGCCACGCGGTGGCTGCTTCAATGGCACCTGCACCT
BO14834.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14821-PA | 1044 | CG14821-RA | 173..1041 | 887..19 | 4320 | 99.8 | Minus |
CG14459-PA | 483 | CG14459-RA | 171..218 | 577..530 | 165 | 93.7 | Minus |
CG3978-PB | 1467 | pnr-RB | 882..935 | 577..524 | 145 | 90.7 | Minus |
CG3978-PA | 1623 | pnr-RA | 1038..1091 | 577..524 | 145 | 90.7 | Minus |
CG7391-PF | 2886 | Clk-RF | 2208..2261 | 577..524 | 145 | 90.7 | Minus |
CG7391-PB | 3072 | Clk-RB | 2394..2447 | 577..524 | 145 | 90.7 | Minus |
CG7391-PA | 3072 | Clk-RA | 2394..2447 | 577..524 | 145 | 90.7 | Minus |
CG7391-PC | 3084 | Clk-RC | 2406..2459 | 577..524 | 145 | 90.7 | Minus |
CG7391-PD | 3084 | Clk-RD | 2406..2459 | 577..524 | 145 | 90.7 | Minus |
CG8118-PA | 4785 | mam-RA | 2400..2447 | 577..530 | 140 | 91.6 | Minus |
CG8118-PB | 4785 | mam-RB | 2400..2447 | 577..530 | 140 | 91.6 | Minus |
CG1343-PB | 1563 | Sp1-RB | 1320..1346 | 577..551 | 135 | 100 | Minus |
CG1343-PA | 2076 | Sp1-RA | 1833..1859 | 577..551 | 135 | 100 | Minus |
CG6619-PA | 2601 | CG6619-RA | 1629..1690 | 577..516 | 135 | 88.7 | Minus |
CG14442-PA | 3105 | CG14442-RA | 963..994 | 577..546 | 135 | 96.8 | Minus |
CG7015-PA | 3120 | CG7015-RA | 189..220 | 577..546 | 135 | 96.8 | Minus |
CG2904-PA | 5139 | ec-RA | 4362..4393 | 577..546 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1988 | CG14821-RF | 960..1828 | 887..19 | 4330 | 99.9 | Minus |
tow-RD | 2654 | CG14821-RD | 975..1843 | 887..19 | 4330 | 99.9 | Minus |
tow-RC | 1508 | CG14821-RC | 480..1348 | 887..19 | 4330 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6947396..6947915 | 887..368 | 2585 | 99.8 | Minus |
3L | 28110227 | 3L | 6948275..6948502 | 246..19 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 6947985..6948110 | 368..243 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:43:44 has no hits.
BO14834.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:39 Download gff for
BO14834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14821-PA | 173..1044 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:53 Download gff for
BO14834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14821-PA | 173..1044 | 16..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:59 Download gff for
BO14834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 480..1356 | 12..887 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:45 Download gff for
BO14834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 480..1356 | 12..887 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:45 Download gff for
BO14834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6947396..6947915 | 368..887 | 99 | -> | Minus |
3L | 6947986..6948109 | 244..367 | 100 | -> | Minus |
3L | 6948278..6948510 | 12..243 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:59 Download gff for
BO14834.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6940496..6941015 | 368..887 | 99 | -> | Minus |
arm_3L | 6941086..6941209 | 244..367 | 100 | -> | Minus |
arm_3L | 6941378..6941610 | 12..243 | 98 | | Minus |
BO14834.5prime Sequence
866 bp (790 high quality bases) assembled on 2006-06-16
> BO14834.5prime
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGG
BO14834.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14821-PA | 1044 | CG14821-RA | 1..850 | 17..866 | 4250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:46:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1988 | CG14821-RF | 787..1637 | 16..866 | 4255 | 100 | Plus |
tow-RD | 2654 | CG14821-RD | 802..1652 | 16..866 | 4255 | 100 | Plus |
tow-RC | 1508 | CG14821-RC | 307..1157 | 16..866 | 4255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6947246..6947915 | 39..708 | 3350 | 100 | Plus |
3L | 28110227 | 3L | 6947985..6948110 | 708..833 | 630 | 100 | Plus |
3L | 28110227 | 3L | 6948275..6948311 | 830..866 | 185 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:46:26 has no hits.
BO14834.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:40 Download gff for
BO14834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14821-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:54 Download gff for
BO14834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14821-PA | 1..850 | 17..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:06 Download gff for
BO14834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 300..1157 | 8..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:18:59 Download gff for
BO14834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 300..1157 | 8..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:18:59 Download gff for
BO14834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6947248..6947915 | 41..708 | 100 | -> | Plus |
3L | 6947986..6948109 | 709..832 | 100 | -> | Plus |
3L | 6948278..6948311 | 833..866 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:06 Download gff for
BO14834.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6940348..6941015 | 41..708 | 100 | -> | Plus |
arm_3L | 6941086..6941209 | 709..832 | 100 | -> | Plus |
arm_3L | 6941378..6941411 | 833..866 | 100 | | Plus |
BO14834.complete Sequence
1075 bp (1075 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633257
> BO14834.complete
GAAGTTATCAGTCGACATGCTGGACAAGAAGATTGATGAGGGTCCCGACT
ACGATTCGGCCAGCGAGACGGAGATCGCATTGGAGGAGGCCCGACTAAAC
GCCCTGCGTCAACATTGGGAGTCCGCCAGCATTACGGCCTCCATCTGCTC
CTCGGCCAGCCGCTCGCTGCAGACGACGCCCATCCGCCAGGTGCAGGTGC
CATTGAAGCAGCCACCGCGTGGCGCCGGCCTGCTGATTCAGCCTTCTAGC
GCCTCGGCGGTCACCGCCTCCACCTCCTCCTCCTCCTCATCGACGATAGT
CGCGCTGCCCACGACGGAGTATCTACCTCAGCATGTGTTGACGGGACGGC
AAGTGGTGCAGCAGCAGCAACAACAGCAGCAGCAACAGGCGGCAGTGCTC
TACCAGCAGCAGCAGCAGCAACTAATACTGCTGCCCCAGTTGGATCCTAA
TGTTGTCAACACGTCCACGGCAGCAGCAGCGGCACAGCTCGTCCAGTTGC
AGCAGCAGCATCAACAGCAGCAACAACAGCTACAGCTGCAGCAGCAACAG
CAGCTGCAACTCAATCAGCAGCAGCAGCAGCAACTTTACCAGCAGCAGCA
ACAGCAATACCTGCTGACCCTTCCCGCCGGATCAAAGCCCCAGAGCGTGA
GTCCAAAGCGCCTGATCTATGGTGGACCCGCTGCAACCACTCTCCTCTGT
GCAACTGGCATCAAATGCAACGCCCCCGAAACTTACGAACCGCCAACCGC
TCCACACAGCCAAATCCAGCAGCAACAGCCACCGCCTCCTCCGCCGGGCG
CCTACTACGGCGAGATGATGCACGGCGTACAGGCCGCTCCAGCGGCGGAA
TACAAGTTCCCGCCGGCCATCAGCGTGCAGAGACTGGCGCCGCAGGTGCA
GCGGCAGTTGCGCGAGACGCAGGAACTCATAAAAGACTCGTGCCCGCAGC
TGTATGCGGCGGGCTATGGCAGCCCAGGACCACCGATACGCAATCCCAGC
AGGAACCCCACTAGAACTAGACCCACCCTGGAGACGCAGTTCTCGCAGGA
ACTCTCGGCAAGCTTTCTAGACCAT
BO14834.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1326 | CG14821-PF | 282..1323 | 16..1057 | 5210 | 100 | Plus |
tow-RD | 1341 | CG14821-PD | 297..1338 | 16..1057 | 5210 | 100 | Plus |
tow-RC | 1341 | CG14821-PC | 297..1338 | 16..1057 | 5210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-RF | 1988 | CG14821-RF | 787..1828 | 16..1057 | 5210 | 100 | Plus |
tow-RD | 2654 | CG14821-RD | 802..1843 | 16..1057 | 5210 | 100 | Plus |
tow-RC | 1508 | CG14821-RC | 307..1348 | 16..1057 | 5210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6947246..6947915 | 39..708 | 3350 | 100 | Plus |
3L | 28110227 | 3L | 6948275..6948502 | 830..1057 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 6947985..6948110 | 708..833 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:10:17 has no hits.
BO14834.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:35 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 290..1341 | 8..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:23 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 290..1346 | 8..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:58 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 308..1348 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:35 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 290..1346 | 8..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:25 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
tow-RC | 308..1348 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:25 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6946535..6946558 | 17..40 | 100 | -> | Plus |
3L | 6947248..6947915 | 41..708 | 100 | -> | Plus |
3L | 6947986..6948109 | 709..832 | 100 | -> | Plus |
3L | 6948278..6948502 | 833..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:58 Download gff for
BO14834.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6939635..6939658 | 17..40 | 100 | -> | Plus |
arm_3L | 6940348..6941015 | 41..708 | 100 | -> | Plus |
arm_3L | 6941086..6941209 | 709..832 | 100 | -> | Plus |
arm_3L | 6941378..6941602 | 833..1059 | 99 | | Plus |
BO14834.pep Sequence
Translation from 16 to 1075
> BO14834.pep
MLDKKIDEGPDYDSASETEIALEEARLNALRQHWESASITASICSSASRS
LQTTPIRQVQVPLKQPPRGAGLLIQPSSASAVTASTSSSSSSTIVALPTT
EYLPQHVLTGRQVVQQQQQQQQQQAAVLYQQQQQQLILLPQLDPNVVNTS
TAAAAAQLVQLQQQHQQQQQQLQLQQQQQLQLNQQQQQQLYQQQQQQYLL
TLPAGSKPQSVSPKRLIYGGPAATTLLCATGIKCNAPETYEPPTAPHSQI
QQQQPPPPPPGAYYGEMMHGVQAAPAAEYKFPPAISVQRLAPQVQRQLRE
TQELIKDSCPQLYAAGYGSPGPPIRNPSRNPTRTRPTLETQFSQELSASF
LDH
BO14834.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
tow-PF | 441 | CG14821-PF | 95..441 | 1..347 | 1767 | 100 | Plus |
tow-PD | 446 | CG14821-PD | 100..446 | 1..347 | 1767 | 100 | Plus |
tow-PC | 446 | CG14821-PC | 100..446 | 1..347 | 1767 | 100 | Plus |
tow-PG | 446 | CG14821-PG | 95..446 | 1..347 | 1751 | 98.6 | Plus |
tow-PE | 451 | CG14821-PE | 100..451 | 1..347 | 1751 | 98.6 | Plus |