Clone BO14844 Report

Search the DGRC for BO14844

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4e1-RA
Protein status:BO14844.pep: Imported from assembly
Sequenced Size:1628

Clone Sequence Records

BO14844.3prime Sequence

931 bp (867 high quality bases) assembled on 2006-06-16

> BO14844.3prime
ATGGTCTAGAAAGCTTGCTGTACTATCGCATACAAGCCTCTGCTTCATGC
GTAGATGTAGACCATTTTCGGACTTCAGAGTCATGGATGCCGACAAAATT
GGATCATACTTATGGTTGTGAGCATCACGGCTCTTCTTCTCTGCCGGCTG
AAGACCTAGAGTTGTGCTTATATAGCCATCCTTGGAAACGAGCTCATCCA
GAGCTGGCAGCACCTCGAAATTTCGAATGATTTTGGACACCACAGTCTTG
ATCTCCAGCAGTGCAAACTTCTGACCAATGCAATTTCGGGGACCAGCACT
AAAGGGCACGTACTCAAACGGCCCTGGTTTCTCACGGTCGAAGCGTTCGG
GCTGGAATTTGTGAGGATCCTTAAAAACACGGTCATTGTATCCCAACATA
AGAAGGCCCAAGTTCAAGGTAGTCCCCTTCGGCACAATGTCACCATCAAT
TACGTAGTCCTTCTCAGTAAAGCGACCAATGAAAGGGACACTCGGATAAA
GACGTTGCGCCTCCTTTATAAACAAATCCAAATGTTTCATTGTGGATATC
TCCTGAAACGTGGCATCTCGACCAAGTCCAGAAGCGCCCATCACATCGCA
CTGCTCGTTAAATAATTTTTCCTGTTCATCTGGATGTCGAGAAAGTAAGT
AGACTGCAAAACCTACACCAGATGTAGTAGTGTCATGCCCTTCAAACATA
AAGGTGGAAACTTCCTCGTAAAGCTCTTGGGAAGTCAGAGGACGTCCATC
CACTTTGGATGACAGCAGAGTGTCCAAAAATGCCATTTTCTTGCGGGAGA
ACTCGTCAGCCTTAATGCCGACTTCAAGCCCTGATTTTCGGACTTCGATT
CTCTTCGCTATTATCTCATTGGTAAAGTCCTGCAGGGTTTTCAGTGTTTT
ACTATATTCTGGATATTCANGAGCAAAGTGA

BO14844.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2062-PA 1596 Cyp4e1-RA 681..1593 931..19 4546 99.8 Minus
CG2060-PA 1581 Cyp4e2-RA 1279..1448 333..164 350 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 733..1645 931..19 4554 99.9 Minus
Cyp4e2-RB 1880 CG2060-RB 878..1609 891..160 1250 78.4 Minus
Cyp4e2-RA 1783 CG2060-RA 781..1512 891..160 1250 78.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:56:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8449190..8449618 447..19 2145 100 Minus
2R 25286936 2R 8448587..8448897 931..621 1544 99.7 Minus
2R 25286936 2R 8448959..8449136 624..447 890 100 Minus
2R 25286936 2R 8446684..8446893 369..160 585 85.2 Minus
2R 25286936 2R 8446129..8446312 804..621 380 80.4 Minus
2R 25286936 2R 8446375..8446538 618..455 310 79.3 Minus
2L 23513712 2L 9748760..9748888 664..792 225 78.3 Plus
Blast to na_te.dros performed on 2015-01-30 18:56:57 has no hits.

BO14844.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:50 Download gff for BO14844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 682..1596 16..930 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:09 Download gff for BO14844.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 682..1596 16..930 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:53 Download gff for BO14844.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 734..1649 15..930 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:16:24 Download gff for BO14844.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 734..1649 15..930 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:16:24 Download gff for BO14844.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8448588..8448896 622..930 99 -> Minus
2R 8448962..8449136 447..621 100 -> Minus
2R 8449191..8449622 15..446 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:53 Download gff for BO14844.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4336093..4336401 622..930 99 -> Minus
arm_2R 4336467..4336641 447..621 100 -> Minus
arm_2R 4336696..4337127 15..446 99   Minus

BO14844.5prime Sequence

884 bp (773 high quality bases) assembled on 2006-06-16

> BO14844.5prime
GAAGTTATCAGTCGGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTT
CCACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCG
AATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATG
CTCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGC
TGGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTA
CTCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCA
GTCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGG
CTGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCG
GAAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACG
AGGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTG
GCAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGAC
TCTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGG
AAAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACC
ATTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCA
CTTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGG
ACTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGG
CTTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATT
TTTGGACACTCTGCTGTCATCCAAAGTGGATGGA

BO14844.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2062-PA 1596 Cyp4e1-RA 1..867 18..884 4335 100 Plus
CG2060-PA 1581 Cyp4e2-RA 325..461 342..478 460 93.4 Plus
CG4105-PA 1581 Cyp4e3-RA 367..453 384..470 285 93.1 Plus
CG2060-PA 1581 Cyp4e2-RA 526..590 543..607 225 93.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..919 18..884 4335 100 Plus
Cyp4e2-RB 1880 CG2060-RB 272..1013 132..873 1180 78.1 Plus
Cyp4e2-RA 1783 CG2060-RA 175..916 132..873 1180 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8448101..8448452 286..637 1760 100 Plus
2R 25286936 2R 8448527..8448773 638..884 1235 100 Plus
2R 25286936 2R 8445532..8445883 286..637 950 84.7 Plus
2R 25286936 2R 8447503..8447662 18..177 800 100 Plus
2R 25286936 2R 8447930..8448042 175..287 565 100 Plus
2L 23513712 2L 9749185..9749442 602..345 480 79.1 Minus
Blast to na_te.dros performed on 2015-02-04 02:06:00 has no hits.

BO14844.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:51 Download gff for BO14844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 1..866 18..883 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:11 Download gff for BO14844.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 1..866 18..883 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:34 Download gff for BO14844.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..918 9..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:54 Download gff for BO14844.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..918 9..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:54 Download gff for BO14844.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8447495..8447662 9..177 97 -> Plus
2R 8447933..8448042 178..287 100 -> Plus
2R 8448103..8448452 288..637 100 -> Plus
2R 8448527..8448772 638..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:34 Download gff for BO14844.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4335000..4335167 9..177 97 -> Plus
arm_2R 4335438..4335547 178..287 100 -> Plus
arm_2R 4335608..4335957 288..637 100 -> Plus
arm_2R 4336032..4336277 638..883 100   Plus

BO14844.complete Sequence

1628 bp assembled on 2011-06-28

GenBank Submission: KX797690

> BO14844.complete
GAAGTTATCAGTCGGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTT
CCACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCG
AATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATG
CTCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGC
TGGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTA
CTCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCA
GTCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGG
CTGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCG
GAAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACG
AGGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTG
GCAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGAC
TCTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGG
AAAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACC
ATTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCA
CTTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGG
ACTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGG
CTTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATT
TTTGGACACTCTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCC
AAGAGCTTTACGAGGAAGTTTCCACCTTTATGTTTGAAGGGCATGACACT
ACTACATCTGGTGTAGGTTTTGCAGTCTACTTACTTTCTCGACATCCAGA
TGAACAGGAAAAATTATTTAACGAGCAGTGCGATGTGATGGGCGCTTCTG
GACTTGGTCGAGATGCCACGTTTCAGGAGATATCCACAATGAAACATTTG
GATTTGTTTATAAAGGAGGCGCAACGTCTTTATCCGAGTGTCCCTTTCAT
TGGTCGCTTTACTGAGAAGGACTACGTAATTGATGGTGACATTGTGCCGA
AGGGGACTACCTTGAACTTGGGCCTTCTTATGTTGGGATACAATGACCGT
GTTTTTAAGGATCCTCACAAATTCCAGCCCGAACGCTTCGACCGTGAGAA
ACCAGGGCCGTTTGAGTACGTGCCCTTTAGTGCTGGTCCCCGAAATTGCA
TTGGTCAGAAGTTTGCACTGCTGGAGATCAAGACTGTGGTGTCCAAAATC
ATTCGAAATTTCGAGGTGCTGCCAGCTCTGGATGAGCTCGTTTCCAAGGA
TGGCTATATAAGCACAACTCTAGGTCTTCAGCCGGCAGAGAAGAAGAGCC
GTGATGCTCACAACCATAAGTATGATCCAATTTTGTCGGCATCCATGACT
CTGAAGTCCGAAAATGGTCTACATCTACGCATGAAGCAGAGGCTTGTATG
CGATAGTACAGCAAGCTTTCTAGACCAT

BO14844.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1596 CG2062-PA 1..1593 18..1610 7965 100 Plus
Cyp4e2-RB 1581 CG2060-PB 115..1452 132..1469 2175 77.5 Plus
Cyp4e2-RA 1581 CG2060-PA 115..1452 132..1469 2175 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:29
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..1645 18..1610 7965 100 Plus
Cyp4e2-RB 1880 CG2060-RB 272..1609 132..1469 2175 77.5 Plus
Cyp4e2-RA 1783 CG2060-RA 175..1512 132..1469 2175 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8449190..8449618 1182..1610 2145 100 Plus
2R 25286936 2R 8448527..8448897 638..1008 1855 100 Plus
2R 25286936 2R 8448101..8448452 286..637 1760 100 Plus
2R 25286936 2R 8445532..8445883 286..637 950 84.7 Plus
2R 25286936 2R 8448959..8449136 1005..1182 890 100 Plus
2R 25286936 2R 8447503..8447662 18..177 800 100 Plus
2R 25286936 2R 8446684..8446893 1260..1469 585 85.2 Plus
2R 25286936 2R 8447930..8448042 175..287 565 100 Plus
2L 23513712 2L 9749185..9749442 602..345 480 79.1 Minus
2R 25286936 2R 8445948..8446312 644..1008 385 73.7 Plus
2R 25286936 2R 8446375..8446538 1011..1174 310 79.3 Plus
2L 23513712 2L 9748760..9748888 965..837 225 78.3 Minus
Blast to na_te.dros performed on 2014-11-26 16:15:27 has no hits.

BO14844.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:25 Download gff for BO14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 34..1627 17..1612 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:12 Download gff for BO14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 52..1645 17..1612 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:48 Download gff for BO14844.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 52..1645 17..1612 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:48 Download gff for BO14844.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8448527..8448896 638..1007 100 -> Plus
2R 8448962..8449136 1008..1182 100 -> Plus
2R 8449191..8449618 1183..1612 99   Plus
2R 8447502..8447662 17..177 99 -> Plus
2R 8447933..8448042 178..287 100 -> Plus
2R 8448103..8448452 288..637 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:12 Download gff for BO14844.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4335007..4335167 17..177 99 -> Plus
arm_2R 4335438..4335547 178..287 100 -> Plus
arm_2R 4335608..4335957 288..637 100 -> Plus
arm_2R 4336032..4336401 638..1007 100 -> Plus
arm_2R 4336467..4336641 1008..1182 100 -> Plus
arm_2R 4336696..4337123 1183..1612 99   Plus

BO14844.pep Sequence

Translation from 17 to 1628

> BO14844.pep
MWIVLCAFLALPLFLVTYFELGLLRRKRMLNKFQGPSMLPLVGNAHQMGN
TPTEILNRFFGWWHEYGKDNFRYWIGYYSNIMVTNPKYMEFILSSQTLIS
KSDVYDLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIDQLKKVADGGNIFDFQEEAHYLTLDVICDTAMGVSINAMENRSSS
VVQAFKDITYTIKMRAFSPWKRNKYLFHFAPEYPEYSKTLKTLQDFTNEI
IAKRIEVRKSGLEVGIKADEFSRKKMAFLDTLLSSKVDGRPLTSQELYEE
VSTFMFEGHDTTTSGVGFAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDA
TFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDIVPKGTTLN
LGLLMLGYNDRVFKDPHKFQPERFDREKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTLGLQPAEKKSRDAHNH
KYDPILSASMTLKSENGLHLRMKQRLVCDSTASFLDH

BO14844.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-PA 531 CG2062-PA 1..531 1..531 2802 100 Plus
Cyp4e2-PB 526 CG2060-PB 1..525 1..525 2251 80.8 Plus
Cyp4e2-PA 526 CG2060-PA 1..525 1..525 2251 80.8 Plus
Cyp4e3-PA 526 CG4105-PA 1..524 1..525 1925 67.6 Plus
Cyp4d1-PA 512 CG3656-PA 1..479 1..467 894 40.6 Plus