Clone Sequence Records
BO14844.3prime Sequence
931 bp (867 high quality bases) assembled on 2006-06-16
> BO14844.3prime
ATGGTCTAGAAAGCTTGCTGTACTATCGCATACAAGCCTCTGCTTCATGC
GTAGATGTAGACCATTTTCGGACTTCAGAGTCATGGATGCCGACAAAATT
GGATCATACTTATGGTTGTGAGCATCACGGCTCTTCTTCTCTGCCGGCTG
AAGACCTAGAGTTGTGCTTATATAGCCATCCTTGGAAACGAGCTCATCCA
GAGCTGGCAGCACCTCGAAATTTCGAATGATTTTGGACACCACAGTCTTG
ATCTCCAGCAGTGCAAACTTCTGACCAATGCAATTTCGGGGACCAGCACT
AAAGGGCACGTACTCAAACGGCCCTGGTTTCTCACGGTCGAAGCGTTCGG
GCTGGAATTTGTGAGGATCCTTAAAAACACGGTCATTGTATCCCAACATA
AGAAGGCCCAAGTTCAAGGTAGTCCCCTTCGGCACAATGTCACCATCAAT
TACGTAGTCCTTCTCAGTAAAGCGACCAATGAAAGGGACACTCGGATAAA
GACGTTGCGCCTCCTTTATAAACAAATCCAAATGTTTCATTGTGGATATC
TCCTGAAACGTGGCATCTCGACCAAGTCCAGAAGCGCCCATCACATCGCA
CTGCTCGTTAAATAATTTTTCCTGTTCATCTGGATGTCGAGAAAGTAAGT
AGACTGCAAAACCTACACCAGATGTAGTAGTGTCATGCCCTTCAAACATA
AAGGTGGAAACTTCCTCGTAAAGCTCTTGGGAAGTCAGAGGACGTCCATC
CACTTTGGATGACAGCAGAGTGTCCAAAAATGCCATTTTCTTGCGGGAGA
ACTCGTCAGCCTTAATGCCGACTTCAAGCCCTGATTTTCGGACTTCGATT
CTCTTCGCTATTATCTCATTGGTAAAGTCCTGCAGGGTTTTCAGTGTTTT
ACTATATTCTGGATATTCANGAGCAAAGTGA
BO14844.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2062-PA | 1596 | Cyp4e1-RA | 681..1593 | 931..19 | 4546 | 99.8 | Minus |
CG2060-PA | 1581 | Cyp4e2-RA | 1279..1448 | 333..164 | 350 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 733..1645 | 931..19 | 4554 | 99.9 | Minus |
Cyp4e2-RB | 1880 | CG2060-RB | 878..1609 | 891..160 | 1250 | 78.4 | Minus |
Cyp4e2-RA | 1783 | CG2060-RA | 781..1512 | 891..160 | 1250 | 78.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:56:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8449190..8449618 | 447..19 | 2145 | 100 | Minus |
2R | 25286936 | 2R | 8448587..8448897 | 931..621 | 1544 | 99.7 | Minus |
2R | 25286936 | 2R | 8448959..8449136 | 624..447 | 890 | 100 | Minus |
2R | 25286936 | 2R | 8446684..8446893 | 369..160 | 585 | 85.2 | Minus |
2R | 25286936 | 2R | 8446129..8446312 | 804..621 | 380 | 80.4 | Minus |
2R | 25286936 | 2R | 8446375..8446538 | 618..455 | 310 | 79.3 | Minus |
2L | 23513712 | 2L | 9748760..9748888 | 664..792 | 225 | 78.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:56:57 has no hits.
BO14844.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:50 Download gff for
BO14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 682..1596 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:09 Download gff for
BO14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 682..1596 | 16..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:53 Download gff for
BO14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 734..1649 | 15..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:16:24 Download gff for
BO14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 734..1649 | 15..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:16:24 Download gff for
BO14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8448588..8448896 | 622..930 | 99 | -> | Minus |
2R | 8448962..8449136 | 447..621 | 100 | -> | Minus |
2R | 8449191..8449622 | 15..446 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:53 Download gff for
BO14844.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4336093..4336401 | 622..930 | 99 | -> | Minus |
arm_2R | 4336467..4336641 | 447..621 | 100 | -> | Minus |
arm_2R | 4336696..4337127 | 15..446 | 99 | | Minus |
BO14844.5prime Sequence
884 bp (773 high quality bases) assembled on 2006-06-16
> BO14844.5prime
GAAGTTATCAGTCGGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTT
CCACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCG
AATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATG
CTCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGC
TGGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTA
CTCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCA
GTCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGG
CTGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCG
GAAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACG
AGGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTG
GCAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGAC
TCTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGG
AAAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACC
ATTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCA
CTTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGG
ACTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGG
CTTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATT
TTTGGACACTCTGCTGTCATCCAAAGTGGATGGA
BO14844.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2062-PA | 1596 | Cyp4e1-RA | 1..867 | 18..884 | 4335 | 100 | Plus |
CG2060-PA | 1581 | Cyp4e2-RA | 325..461 | 342..478 | 460 | 93.4 | Plus |
CG4105-PA | 1581 | Cyp4e3-RA | 367..453 | 384..470 | 285 | 93.1 | Plus |
CG2060-PA | 1581 | Cyp4e2-RA | 526..590 | 543..607 | 225 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 53..919 | 18..884 | 4335 | 100 | Plus |
Cyp4e2-RB | 1880 | CG2060-RB | 272..1013 | 132..873 | 1180 | 78.1 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 175..916 | 132..873 | 1180 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8448101..8448452 | 286..637 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 8448527..8448773 | 638..884 | 1235 | 100 | Plus |
2R | 25286936 | 2R | 8445532..8445883 | 286..637 | 950 | 84.7 | Plus |
2R | 25286936 | 2R | 8447503..8447662 | 18..177 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8447930..8448042 | 175..287 | 565 | 100 | Plus |
2L | 23513712 | 2L | 9749185..9749442 | 602..345 | 480 | 79.1 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:06:00 has no hits.
BO14844.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:51 Download gff for
BO14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 1..866 | 18..883 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:11 Download gff for
BO14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 1..866 | 18..883 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:34 Download gff for
BO14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 45..918 | 9..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:54 Download gff for
BO14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 45..918 | 9..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:54 Download gff for
BO14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8447495..8447662 | 9..177 | 97 | -> | Plus |
2R | 8447933..8448042 | 178..287 | 100 | -> | Plus |
2R | 8448103..8448452 | 288..637 | 100 | -> | Plus |
2R | 8448527..8448772 | 638..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:34 Download gff for
BO14844.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4335000..4335167 | 9..177 | 97 | -> | Plus |
arm_2R | 4335438..4335547 | 178..287 | 100 | -> | Plus |
arm_2R | 4335608..4335957 | 288..637 | 100 | -> | Plus |
arm_2R | 4336032..4336277 | 638..883 | 100 | | Plus |
BO14844.complete Sequence
1628 bp assembled on 2011-06-28
GenBank Submission: KX797690
> BO14844.complete
GAAGTTATCAGTCGGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTT
CCACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCG
AATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATG
CTCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGC
TGGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTA
CTCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCA
GTCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGG
CTGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCG
GAAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACG
AGGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTG
GCAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGAC
TCTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGG
AAAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACC
ATTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCA
CTTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGG
ACTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGG
CTTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATT
TTTGGACACTCTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCC
AAGAGCTTTACGAGGAAGTTTCCACCTTTATGTTTGAAGGGCATGACACT
ACTACATCTGGTGTAGGTTTTGCAGTCTACTTACTTTCTCGACATCCAGA
TGAACAGGAAAAATTATTTAACGAGCAGTGCGATGTGATGGGCGCTTCTG
GACTTGGTCGAGATGCCACGTTTCAGGAGATATCCACAATGAAACATTTG
GATTTGTTTATAAAGGAGGCGCAACGTCTTTATCCGAGTGTCCCTTTCAT
TGGTCGCTTTACTGAGAAGGACTACGTAATTGATGGTGACATTGTGCCGA
AGGGGACTACCTTGAACTTGGGCCTTCTTATGTTGGGATACAATGACCGT
GTTTTTAAGGATCCTCACAAATTCCAGCCCGAACGCTTCGACCGTGAGAA
ACCAGGGCCGTTTGAGTACGTGCCCTTTAGTGCTGGTCCCCGAAATTGCA
TTGGTCAGAAGTTTGCACTGCTGGAGATCAAGACTGTGGTGTCCAAAATC
ATTCGAAATTTCGAGGTGCTGCCAGCTCTGGATGAGCTCGTTTCCAAGGA
TGGCTATATAAGCACAACTCTAGGTCTTCAGCCGGCAGAGAAGAAGAGCC
GTGATGCTCACAACCATAAGTATGATCCAATTTTGTCGGCATCCATGACT
CTGAAGTCCGAAAATGGTCTACATCTACGCATGAAGCAGAGGCTTGTATG
CGATAGTACAGCAAGCTTTCTAGACCAT
BO14844.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1596 | CG2062-PA | 1..1593 | 18..1610 | 7965 | 100 | Plus |
Cyp4e2-RB | 1581 | CG2060-PB | 115..1452 | 132..1469 | 2175 | 77.5 | Plus |
Cyp4e2-RA | 1581 | CG2060-PA | 115..1452 | 132..1469 | 2175 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:15:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 53..1645 | 18..1610 | 7965 | 100 | Plus |
Cyp4e2-RB | 1880 | CG2060-RB | 272..1609 | 132..1469 | 2175 | 77.5 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 175..1512 | 132..1469 | 2175 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:15:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8449190..8449618 | 1182..1610 | 2145 | 100 | Plus |
2R | 25286936 | 2R | 8448527..8448897 | 638..1008 | 1855 | 100 | Plus |
2R | 25286936 | 2R | 8448101..8448452 | 286..637 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 8445532..8445883 | 286..637 | 950 | 84.7 | Plus |
2R | 25286936 | 2R | 8448959..8449136 | 1005..1182 | 890 | 100 | Plus |
2R | 25286936 | 2R | 8447503..8447662 | 18..177 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8446684..8446893 | 1260..1469 | 585 | 85.2 | Plus |
2R | 25286936 | 2R | 8447930..8448042 | 175..287 | 565 | 100 | Plus |
2L | 23513712 | 2L | 9749185..9749442 | 602..345 | 480 | 79.1 | Minus |
2R | 25286936 | 2R | 8445948..8446312 | 644..1008 | 385 | 73.7 | Plus |
2R | 25286936 | 2R | 8446375..8446538 | 1011..1174 | 310 | 79.3 | Plus |
2L | 23513712 | 2L | 9748760..9748888 | 965..837 | 225 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:15:27 has no hits.
BO14844.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:25 Download gff for
BO14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 34..1627 | 17..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:12 Download gff for
BO14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 52..1645 | 17..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:48 Download gff for
BO14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 52..1645 | 17..1612 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:48 Download gff for
BO14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8448527..8448896 | 638..1007 | 100 | -> | Plus |
2R | 8448962..8449136 | 1008..1182 | 100 | -> | Plus |
2R | 8449191..8449618 | 1183..1612 | 99 | | Plus |
2R | 8447502..8447662 | 17..177 | 99 | -> | Plus |
2R | 8447933..8448042 | 178..287 | 100 | -> | Plus |
2R | 8448103..8448452 | 288..637 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:12 Download gff for
BO14844.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4335007..4335167 | 17..177 | 99 | -> | Plus |
arm_2R | 4335438..4335547 | 178..287 | 100 | -> | Plus |
arm_2R | 4335608..4335957 | 288..637 | 100 | -> | Plus |
arm_2R | 4336032..4336401 | 638..1007 | 100 | -> | Plus |
arm_2R | 4336467..4336641 | 1008..1182 | 100 | -> | Plus |
arm_2R | 4336696..4337123 | 1183..1612 | 99 | | Plus |
BO14844.pep Sequence
Translation from 17 to 1628
> BO14844.pep
MWIVLCAFLALPLFLVTYFELGLLRRKRMLNKFQGPSMLPLVGNAHQMGN
TPTEILNRFFGWWHEYGKDNFRYWIGYYSNIMVTNPKYMEFILSSQTLIS
KSDVYDLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIDQLKKVADGGNIFDFQEEAHYLTLDVICDTAMGVSINAMENRSSS
VVQAFKDITYTIKMRAFSPWKRNKYLFHFAPEYPEYSKTLKTLQDFTNEI
IAKRIEVRKSGLEVGIKADEFSRKKMAFLDTLLSSKVDGRPLTSQELYEE
VSTFMFEGHDTTTSGVGFAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDA
TFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDIVPKGTTLN
LGLLMLGYNDRVFKDPHKFQPERFDREKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTLGLQPAEKKSRDAHNH
KYDPILSASMTLKSENGLHLRMKQRLVCDSTASFLDH
BO14844.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-PA | 531 | CG2062-PA | 1..531 | 1..531 | 2802 | 100 | Plus |
Cyp4e2-PB | 526 | CG2060-PB | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e2-PA | 526 | CG2060-PA | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e3-PA | 526 | CG4105-PA | 1..524 | 1..525 | 1925 | 67.6 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 1..479 | 1..467 | 894 | 40.6 | Plus |