Clone BO14845 Report

Search the DGRC for BO14845

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:45
Vector:pDNR-Dual
Associated Gene/Transcriptyellow-f-RA
Protein status:BO14845.pep: validated full length
Sequenced Size:1321

Clone Sequence Records

BO14845.3prime Sequence

761 bp (760 high quality bases) assembled on 2006-05-29

> BO14845.3prime
ATGGTCTAGAAAGCTTGCCTCACAAACTGTTCCCCTCTTGGCCAGCAATG
TCGACTGCCTCCAGATTCGGAAATTGTACTTCTCCACATCCAGCTTGGAG
TACACAAAGATGGGCATGGAGTTGGACATCACCCAAATGTATCCCTCCTC
GTCGATGGTCAAATCGCTGGGATAAATCATCTCCGATGAATTGGAATAAA
CGGAGCCATGGTTTTCCGTTGAGAACGGCTTGCTGGTTTTCCAGCAGCCC
ACTCCACTCTTCTGGACCTCGGCAAAGAAAATCACCCCGGTCCGCGGATC
GTATTTATGCATTGTGGACTGGGTGGACGGACCACGAGTTCCCAGAAGAT
GGAAGTCGTCTCCATGATCAGAACGTGCTGCATTGAATTCCTGCTGCAAG
ACCCTGTTGCTAACCACAAACTCATTCGTGCTGGCCATAGGATGGAAGAA
GACATCCCTGCTGCCATCGGGCTTATATGATCCCAAGGTCGCCGAGAAAA
TCCCGTCGTCCCAGCGGAAGGTCTGCCCACCAATGTTGAGATTATCAGAA
AGGGGATCAAAGTTAAAGAAGCTGTGCTCGAAGGACCAAATTCTATCGCT
TCGCAGGTGATAGACGTGCAGTCTGCGATTGACCAAATCCGGAATGTAGG
CATAGGCATCGTTGCACCTCCGAGCGCCCACATCGATTGTGATGCTGGCT
AGTCCACGTCCGATCTCCACTATGCTCTGCGGAATCTCAAATCGTTTCAA
TAAGCGATCGT

BO14845.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18550-PA 1290 yellow-f-RA 545..1287 761..19 3715 100 Minus
CG8063-PA 1359 yellow-f2-RA 758..802 617..573 175 95.5 Minus
CG8063-PA 1359 yellow-f2-RA 1236..1268 139..107 140 96.9 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RC 1391 CG18550-RC 553..1295 761..19 3715 100 Minus
yellow-f-RB 1406 CG18550-RB 568..1310 761..19 3715 100 Minus
yellow-f-RA 1439 CG18550-RA 601..1343 761..19 3715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:56:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12991744..12992348 157..761 3025 100 Plus
3R 32079331 3R 12993667..12994241 160..734 985 78.1 Plus
3R 32079331 3R 12991545..12991682 19..156 690 100 Plus
3R 32079331 3R 12993459..12993593 19..153 255 79.3 Plus
Blast to na_te.dros performed on 2015-01-30 18:56:31 has no hits.

BO14845.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:53 Download gff for BO14845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18550-PA 545..1290 16..761 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:12 Download gff for BO14845.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18550-PA 545..1290 16..761 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:49 Download gff for BO14845.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 601..1343 19..761 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:16:20 Download gff for BO14845.3prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 601..1343 19..761 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:16:20 Download gff for BO14845.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12991545..12991682 19..156 100 <- Plus
3R 12991744..12992348 157..761 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:49 Download gff for BO14845.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817267..8817404 19..156 100 <- Plus
arm_3R 8817466..8818070 157..761 100   Plus

BO14845.5prime Sequence

814 bp (728 high quality bases) assembled on 2006-06-16

> BO14845.5prime
GAAGTTATCAGTCGACATGTTATCGCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATTATCTCAACATTGGTGGGCAGA
CCTTCCGCTGGGAC

BO14845.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18550-PA 1290 yellow-f-RA 1..798 17..814 3965 99.8 Plus
CG8063-PA 1359 yellow-f2-RA 758..802 705..749 175 95.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1439 CG18550-RA 57..854 17..814 3975 99.9 Plus
yellow-f-RB 1406 CG18550-RB 218..821 211..814 3005 99.8 Plus
yellow-f-RC 1391 CG18550-RC 217..806 225..814 2935 99.8 Plus
yellow-f-RB 1406 CG18550-RB 57..219 17..179 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12992466..12992797 509..178 1660 100 Minus
3R 32079331 3R 12992095..12992399 814..510 1510 99.7 Minus
3R 32079331 3R 12992983..12993145 179..17 815 100 Minus
3R 32079331 3R 12994430..12994695 507..242 505 79.3 Minus
3R 32079331 3R 12994015..12994319 814..510 445 76.4 Minus
3R 32079331 3R 12994977..12995073 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2015-02-12 19:44:58 has no hits.

BO14845.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:54 Download gff for BO14845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18550-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:14 Download gff for BO14845.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18550-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:09:40 Download gff for BO14845.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 57..854 17..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:43 Download gff for BO14845.5prime
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 57..854 17..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:43 Download gff for BO14845.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12992095..12992399 510..814 99 <- Minus
3R 12992466..12992795 180..509 100 <- Minus
3R 12992983..12993145 17..179 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:09:40 Download gff for BO14845.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817817..8818121 510..814 99 <- Minus
arm_3R 8818188..8818517 180..509 100 <- Minus
arm_3R 8818705..8818867 17..179 100   Minus

BO14845.complete Sequence

1321 bp (1321 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633258

> BO14845.complete
GAAGTTATCAGTCGACATGTTATCGCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGA
CCTTCCGCTGGGACGACGGGATTTTCTCGGCGACCTTGGGATCATATAAG
CCCGATGGCAGCAGGGATGTCTTCTTCCATCCTATGGCCAGCACGAATGA
GTTTGTGGTTAGCAACAGGGTCTTGCAGCAGGAATTCAATGCAGCACGTT
CTGATCATGGAGACGACTTCCATCTTCTGGGAACTCGTGGTCCGTCCACC
CAGTCCACAATGCATAAATACGATCCGCGGACCGGGGTGATTTTCTTTGC
CGAGGTCCAGAAGAGTGGAGTGGGCTGCTGGAAAACCAGCAAGCCGTTCT
CAACGGAAAACCATGGCTCCGTTTATTCCAATTCATCGGAGATGATTTAT
CCCAGCGATTTGACCATCGACGAGGAGGGATACATTTGGGTGATGTCCAA
CTCCATGCCCATCTTTGTGTACTCCAAGCTGGATGTGGAGAAGTACAATT
TCCGAATCTGGAGGCAGTCGACATTGCTGGCCAAGAGGGGAACAGTTTGT
GAGGCAAGCTTTCTAGACCAT

BO14845.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1290 CG18550-PA 1..1287 17..1303 6435 100 Plus
yellow-f-RB 1257 CG18550-PB 162..1254 211..1303 5465 100 Plus
yellow-f-RC 1242 CG18550-PC 161..1239 225..1303 5395 100 Plus
yellow-f-RB 1257 CG18550-PB 1..163 17..179 815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-RA 1439 CG18550-RA 57..1343 17..1303 6435 100 Plus
yellow-f-RB 1406 CG18550-RB 218..1310 211..1303 5465 100 Plus
yellow-f-RC 1391 CG18550-RC 217..1295 225..1303 5395 100 Plus
yellow-f-RB 1406 CG18550-RB 57..219 17..179 815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12991744..12992399 1165..510 3280 100 Minus
3R 32079331 3R 12992466..12992797 509..178 1660 100 Minus
3R 32079331 3R 12993667..12994319 1162..510 1030 77.2 Minus
3R 32079331 3R 12992983..12993145 179..17 815 100 Minus
3R 32079331 3R 12991545..12991682 1303..1166 690 100 Minus
3R 32079331 3R 12994430..12994695 507..242 505 79.3 Minus
3R 32079331 3R 12993459..12993593 1303..1169 255 79.3 Minus
3R 32079331 3R 12994977..12995073 145..49 245 83.5 Minus
Blast to na_te.dros performed on 2014-11-27 01:01:38 has no hits.

BO14845.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:36 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 1..1290 17..1306 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:25 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 57..1343 17..1303 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:37 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 62..1343 22..1305 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:37 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 57..1343 17..1303 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:38 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
yellow-f-RA 62..1343 22..1305 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:38 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12991542..12991682 1166..1305 98 <- Minus
3R 12991744..12992399 510..1165 100 <- Minus
3R 12992466..12992795 180..509 100 <- Minus
3R 12992983..12993140 22..179 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:37 Download gff for BO14845.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8817264..8817404 1166..1305 98 <- Minus
arm_3R 8817466..8818121 510..1165 100 <- Minus
arm_3R 8818188..8818517 180..509 100 <- Minus
arm_3R 8818705..8818862 22..179 100   Minus

BO14845.pep Sequence

Translation from 16 to 1321

> BO14845.pep
MLSLDVLLLCAISGFQLLISADGDPMIEVFKWKQLDFYNRGDGYKDLWNR
ICIPDSHFYNSRKCLGSSSSGSFIQYNNVPQGVTHFRGRLFVTVPRRQPG
IPSTLNYIDLAKDGWSQSPHLRAYPNLAVNQYNASEQNLVSVYRTSVDVC
GRLWFVDTGMLEFPNNRQQIRHPSIWVIDLANDRLLKRFEIPQSIVEIGR
GLASITIDVGARRCNDAYAYIPDLVNRRLHVYHLRSDRIWSFEHSFFNFD
PLSDNLNIGGQTFRWDDGIFSATLGSYKPDGSRDVFFHPMASTNEFVVSN
RVLQQEFNAARSDHGDDFHLLGTRGPSTQSTMHKYDPRTGVIFFAEVQKS
GVGCWKTSKPFSTENHGSVYSNSSEMIYPSDLTIDEEGYIWVMSNSMPIF
VYSKLDVEKYNFRIWRQSTLLAKRGTVCEASFLDH

BO14845.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
yellow-f-PA 429 CG18550-PA 1..429 1..429 2305 100 Plus
yellow-f-PB 418 CG18550-PB 1..418 1..429 2219 97.4 Plus
yellow-f-PC 413 CG18550-PC 1..413 1..429 2192 96.3 Plus
yellow-f2-PA 452 CG8063-PA 1..452 1..429 1666 69.5 Plus
yellow-c-PB 438 CG4182-PB 6..437 1..429 792 37.6 Plus