Clone Sequence Records
BO14845.3prime Sequence
761 bp (760 high quality bases) assembled on 2006-05-29
> BO14845.3prime
ATGGTCTAGAAAGCTTGCCTCACAAACTGTTCCCCTCTTGGCCAGCAATG
TCGACTGCCTCCAGATTCGGAAATTGTACTTCTCCACATCCAGCTTGGAG
TACACAAAGATGGGCATGGAGTTGGACATCACCCAAATGTATCCCTCCTC
GTCGATGGTCAAATCGCTGGGATAAATCATCTCCGATGAATTGGAATAAA
CGGAGCCATGGTTTTCCGTTGAGAACGGCTTGCTGGTTTTCCAGCAGCCC
ACTCCACTCTTCTGGACCTCGGCAAAGAAAATCACCCCGGTCCGCGGATC
GTATTTATGCATTGTGGACTGGGTGGACGGACCACGAGTTCCCAGAAGAT
GGAAGTCGTCTCCATGATCAGAACGTGCTGCATTGAATTCCTGCTGCAAG
ACCCTGTTGCTAACCACAAACTCATTCGTGCTGGCCATAGGATGGAAGAA
GACATCCCTGCTGCCATCGGGCTTATATGATCCCAAGGTCGCCGAGAAAA
TCCCGTCGTCCCAGCGGAAGGTCTGCCCACCAATGTTGAGATTATCAGAA
AGGGGATCAAAGTTAAAGAAGCTGTGCTCGAAGGACCAAATTCTATCGCT
TCGCAGGTGATAGACGTGCAGTCTGCGATTGACCAAATCCGGAATGTAGG
CATAGGCATCGTTGCACCTCCGAGCGCCCACATCGATTGTGATGCTGGCT
AGTCCACGTCCGATCTCCACTATGCTCTGCGGAATCTCAAATCGTTTCAA
TAAGCGATCGT
BO14845.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18550-PA | 1290 | yellow-f-RA | 545..1287 | 761..19 | 3715 | 100 | Minus |
CG8063-PA | 1359 | yellow-f2-RA | 758..802 | 617..573 | 175 | 95.5 | Minus |
CG8063-PA | 1359 | yellow-f2-RA | 1236..1268 | 139..107 | 140 | 96.9 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RC | 1391 | CG18550-RC | 553..1295 | 761..19 | 3715 | 100 | Minus |
yellow-f-RB | 1406 | CG18550-RB | 568..1310 | 761..19 | 3715 | 100 | Minus |
yellow-f-RA | 1439 | CG18550-RA | 601..1343 | 761..19 | 3715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:56:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12991744..12992348 | 157..761 | 3025 | 100 | Plus |
3R | 32079331 | 3R | 12993667..12994241 | 160..734 | 985 | 78.1 | Plus |
3R | 32079331 | 3R | 12991545..12991682 | 19..156 | 690 | 100 | Plus |
3R | 32079331 | 3R | 12993459..12993593 | 19..153 | 255 | 79.3 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:56:31 has no hits.
BO14845.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:53 Download gff for
BO14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18550-PA | 545..1290 | 16..761 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:12 Download gff for
BO14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18550-PA | 545..1290 | 16..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:49 Download gff for
BO14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 601..1343 | 19..761 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:16:20 Download gff for
BO14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 601..1343 | 19..761 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:16:20 Download gff for
BO14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12991545..12991682 | 19..156 | 100 | <- | Plus |
3R | 12991744..12992348 | 157..761 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:49 Download gff for
BO14845.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8817267..8817404 | 19..156 | 100 | <- | Plus |
arm_3R | 8817466..8818070 | 157..761 | 100 | | Plus |
BO14845.5prime Sequence
814 bp (728 high quality bases) assembled on 2006-06-16
> BO14845.5prime
GAAGTTATCAGTCGACATGTTATCGCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATTATCTCAACATTGGTGGGCAGA
CCTTCCGCTGGGAC
BO14845.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18550-PA | 1290 | yellow-f-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG8063-PA | 1359 | yellow-f2-RA | 758..802 | 705..749 | 175 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RA | 1439 | CG18550-RA | 57..854 | 17..814 | 3975 | 99.9 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 218..821 | 211..814 | 3005 | 99.8 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 217..806 | 225..814 | 2935 | 99.8 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 57..219 | 17..179 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:44:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12992466..12992797 | 509..178 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 12992095..12992399 | 814..510 | 1510 | 99.7 | Minus |
3R | 32079331 | 3R | 12992983..12993145 | 179..17 | 815 | 100 | Minus |
3R | 32079331 | 3R | 12994430..12994695 | 507..242 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12994015..12994319 | 814..510 | 445 | 76.4 | Minus |
3R | 32079331 | 3R | 12994977..12995073 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:44:58 has no hits.
BO14845.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:36:54 Download gff for
BO14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18550-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:14 Download gff for
BO14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18550-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:09:40 Download gff for
BO14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 57..854 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:51:43 Download gff for
BO14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 57..854 | 17..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:51:43 Download gff for
BO14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12992095..12992399 | 510..814 | 99 | <- | Minus |
3R | 12992466..12992795 | 180..509 | 100 | <- | Minus |
3R | 12992983..12993145 | 17..179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:09:40 Download gff for
BO14845.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8817817..8818121 | 510..814 | 99 | <- | Minus |
arm_3R | 8818188..8818517 | 180..509 | 100 | <- | Minus |
arm_3R | 8818705..8818867 | 17..179 | 100 | | Minus |
BO14845.complete Sequence
1321 bp (1321 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633258
> BO14845.complete
GAAGTTATCAGTCGACATGTTATCGCTGGACGTTCTGCTCCTGTGCGCAA
TCTCAGGGTTCCAATTGCTAATCTCTGCAGATGGAGATCCCATGATTGAG
GTCTTCAAGTGGAAGCAGTTGGACTTTTACAATCGCGGCGATGGCTATAA
GGATTTGTGGAACAGGATCTGCATTCCAGATTCGCATTTCTACAACTCCC
GCAAGTGCTTAGGCTCCTCATCCTCAGGATCCTTCATCCAATACAACAAC
GTGCCCCAAGGAGTAACCCACTTTCGAGGACGCCTCTTTGTCACCGTGCC
ACGGCGACAGCCGGGCATTCCGTCCACCTTAAACTACATCGATCTGGCCA
AGGATGGGTGGAGTCAGAGTCCCCATCTACGGGCCTATCCCAACTTGGCG
GTGAATCAGTATAATGCGAGCGAGCAGAACCTAGTGTCTGTCTATAGAAC
CTCAGTGGATGTCTGTGGGCGTCTCTGGTTCGTCGACACCGGAATGCTGG
AGTTTCCCAATAATCGCCAGCAGATTCGACATCCTAGCATTTGGGTGATC
GATTTGGCTAACGATCGCTTATTGAAACGATTTGAGATTCCGCAGAGCAT
AGTGGAGATCGGACGTGGACTAGCCAGCATCACAATCGATGTGGGCGCTC
GGAGGTGCAACGATGCCTATGCCTACATTCCGGATTTGGTCAATCGCAGA
CTGCACGTCTATCACCTGCGAAGCGATAGAATTTGGTCCTTCGAGCACAG
CTTCTTTAACTTTGATCCCCTTTCTGATAATCTCAACATTGGTGGGCAGA
CCTTCCGCTGGGACGACGGGATTTTCTCGGCGACCTTGGGATCATATAAG
CCCGATGGCAGCAGGGATGTCTTCTTCCATCCTATGGCCAGCACGAATGA
GTTTGTGGTTAGCAACAGGGTCTTGCAGCAGGAATTCAATGCAGCACGTT
CTGATCATGGAGACGACTTCCATCTTCTGGGAACTCGTGGTCCGTCCACC
CAGTCCACAATGCATAAATACGATCCGCGGACCGGGGTGATTTTCTTTGC
CGAGGTCCAGAAGAGTGGAGTGGGCTGCTGGAAAACCAGCAAGCCGTTCT
CAACGGAAAACCATGGCTCCGTTTATTCCAATTCATCGGAGATGATTTAT
CCCAGCGATTTGACCATCGACGAGGAGGGATACATTTGGGTGATGTCCAA
CTCCATGCCCATCTTTGTGTACTCCAAGCTGGATGTGGAGAAGTACAATT
TCCGAATCTGGAGGCAGTCGACATTGCTGGCCAAGAGGGGAACAGTTTGT
GAGGCAAGCTTTCTAGACCAT
BO14845.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RA | 1290 | CG18550-PA | 1..1287 | 17..1303 | 6435 | 100 | Plus |
yellow-f-RB | 1257 | CG18550-PB | 162..1254 | 211..1303 | 5465 | 100 | Plus |
yellow-f-RC | 1242 | CG18550-PC | 161..1239 | 225..1303 | 5395 | 100 | Plus |
yellow-f-RB | 1257 | CG18550-PB | 1..163 | 17..179 | 815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-RA | 1439 | CG18550-RA | 57..1343 | 17..1303 | 6435 | 100 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 218..1310 | 211..1303 | 5465 | 100 | Plus |
yellow-f-RC | 1391 | CG18550-RC | 217..1295 | 225..1303 | 5395 | 100 | Plus |
yellow-f-RB | 1406 | CG18550-RB | 57..219 | 17..179 | 815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:01:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12991744..12992399 | 1165..510 | 3280 | 100 | Minus |
3R | 32079331 | 3R | 12992466..12992797 | 509..178 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 12993667..12994319 | 1162..510 | 1030 | 77.2 | Minus |
3R | 32079331 | 3R | 12992983..12993145 | 179..17 | 815 | 100 | Minus |
3R | 32079331 | 3R | 12991545..12991682 | 1303..1166 | 690 | 100 | Minus |
3R | 32079331 | 3R | 12994430..12994695 | 507..242 | 505 | 79.3 | Minus |
3R | 32079331 | 3R | 12993459..12993593 | 1303..1169 | 255 | 79.3 | Minus |
3R | 32079331 | 3R | 12994977..12995073 | 145..49 | 245 | 83.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:01:38 has no hits.
BO14845.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:36 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 1..1290 | 17..1306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:25 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 57..1343 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:37 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 62..1343 | 22..1305 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:37 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 57..1343 | 17..1303 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:38 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
yellow-f-RA | 62..1343 | 22..1305 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:38 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12991542..12991682 | 1166..1305 | 98 | <- | Minus |
3R | 12991744..12992399 | 510..1165 | 100 | <- | Minus |
3R | 12992466..12992795 | 180..509 | 100 | <- | Minus |
3R | 12992983..12993140 | 22..179 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:37 Download gff for
BO14845.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8817264..8817404 | 1166..1305 | 98 | <- | Minus |
arm_3R | 8817466..8818121 | 510..1165 | 100 | <- | Minus |
arm_3R | 8818188..8818517 | 180..509 | 100 | <- | Minus |
arm_3R | 8818705..8818862 | 22..179 | 100 | | Minus |
BO14845.pep Sequence
Translation from 16 to 1321
> BO14845.pep
MLSLDVLLLCAISGFQLLISADGDPMIEVFKWKQLDFYNRGDGYKDLWNR
ICIPDSHFYNSRKCLGSSSSGSFIQYNNVPQGVTHFRGRLFVTVPRRQPG
IPSTLNYIDLAKDGWSQSPHLRAYPNLAVNQYNASEQNLVSVYRTSVDVC
GRLWFVDTGMLEFPNNRQQIRHPSIWVIDLANDRLLKRFEIPQSIVEIGR
GLASITIDVGARRCNDAYAYIPDLVNRRLHVYHLRSDRIWSFEHSFFNFD
PLSDNLNIGGQTFRWDDGIFSATLGSYKPDGSRDVFFHPMASTNEFVVSN
RVLQQEFNAARSDHGDDFHLLGTRGPSTQSTMHKYDPRTGVIFFAEVQKS
GVGCWKTSKPFSTENHGSVYSNSSEMIYPSDLTIDEEGYIWVMSNSMPIF
VYSKLDVEKYNFRIWRQSTLLAKRGTVCEASFLDH
BO14845.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
yellow-f-PA | 429 | CG18550-PA | 1..429 | 1..429 | 2305 | 100 | Plus |
yellow-f-PB | 418 | CG18550-PB | 1..418 | 1..429 | 2219 | 97.4 | Plus |
yellow-f-PC | 413 | CG18550-PC | 1..413 | 1..429 | 2192 | 96.3 | Plus |
yellow-f2-PA | 452 | CG8063-PA | 1..452 | 1..429 | 1666 | 69.5 | Plus |
yellow-c-PB | 438 | CG4182-PB | 6..437 | 1..429 | 792 | 37.6 | Plus |