Clone BO14854 Report

Search the DGRC for BO14854

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptCG5945-RA
Protein status:BO14854.pep: Imported from assembly
Sequenced Size:784

Clone Sequence Records

BO14854.3prime Sequence

782 bp (781 high quality bases) assembled on 2006-06-16

> BO14854.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGAGAAACTGGTCGATGGGAACTAGTT
CGAATGCCTCGTTGAACATTCGCAACATAAGGGGTTGCCAAAACTGTCGA
GTCTCAGGCAACATTATTCCGTAAATATCGCGCCAATACTGATTAGCCAC
ATTCAGAGCGATTTTATCCAGTTCAGGATCTGCAAATATTCCGTTTGCCT
TGATAACCAAGTCCTTGATCTTTGGCTTTGAGTCGATATTCTTGAGGCGG
AAAAACCGATGACCATCCTTCTCGTAGACCTCACCATCGGTCACCGTTAT
GGCCTCCACATCCAAGAGCGTTACGTTGAATTCACCCTTGGGCTTCAGTT
GCAGCTGATTCACCTGCATGTCGGCCTTATAGCTGCCCACAATGTTCAAC
TTGGGCATTTGGGTGACCAGACGGAGTTTCACCTTGTCGCCATTGAGTTT
GACGGACACCTCTTTGGCCCGATTGGAGGAGAAGCCATAAATCTTGGCAT
TGCGAACGGTGATGCGACCATTGACAGTGCCACTAGAGTATTGGAAGCTG
GTTCGGTTGAGGTGCAAAGGTTCGTAGGGCTCGATTCTCAACTCTGGATT
ACCGTCCTTGAGGCGCGGAGTCAATGTGTTAAACAGCTGCTTCACGCACT
CACCCAGCTGATCCTCTTCAGTCGAGCATTTTGGCAAATCAGCAAAGTAG
TTTTTATCCGTGGGAGCTGCACTGCATCCCAAGGCCAGCAGGCTGAGCAA
TCCAATAGTACAATACATGTCGACTGATAACT

BO14854.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-PA 753 CG5945-RA 1..750 768..19 3750 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 1079 CG5945-RB 209..958 768..19 3750 100 Minus
CG5945-RA 903 CG5945-RA 79..828 768..19 3750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13240335..13240710 690..315 1880 100 Minus
2L 23513712 2L 13241503..13241652 168..19 750 100 Minus
2L 23513712 2L 13240763..13240909 314..168 735 100 Minus
2L 23513712 2L 13240197..13240275 768..690 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:30:19 has no hits.

BO14854.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:00 Download gff for BO14854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-PA 1..753 18..768 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:23 Download gff for BO14854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-PA 1..753 18..768 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:47 Download gff for BO14854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 65..833 12..782 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:55 Download gff for BO14854.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 65..833 12..782 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:55 Download gff for BO14854.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13240183..13240275 690..782 94 -> Minus
2L 13240336..13240710 315..689 100 -> Minus
2L 13240763..13240909 168..314 100 -> Minus
2L 13241504..13241657 12..167 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:47 Download gff for BO14854.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13241504..13241657 12..167 98   Minus
arm_2L 13240183..13240275 690..782 94 -> Minus
arm_2L 13240336..13240710 315..689 100 -> Minus
arm_2L 13240763..13240909 168..314 100 -> Minus

BO14854.5prime Sequence

782 bp (749 high quality bases) assembled on 2006-06-16

> BO14854.5prime
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGGCAAGCTTTCTAGACC

BO14854.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-PA 753 CG5945-RA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 1079 CG5945-RB 209..958 17..766 3750 100 Plus
CG5945-RA 903 CG5945-RA 79..828 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13240335..13240710 95..470 1880 100 Plus
2L 23513712 2L 13241503..13241652 617..766 750 100 Plus
2L 23513712 2L 13240763..13240909 471..617 735 100 Plus
2L 23513712 2L 13240197..13240275 17..95 395 100 Plus
Blast to na_te.dros performed on 2015-02-08 11:37:16 has no hits.

BO14854.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:50 Download gff for BO14854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-PA 1..753 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:14:27 Download gff for BO14854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 68..833 5..773 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:32:42 Download gff for BO14854.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 68..833 5..773 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:32:42 Download gff for BO14854.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13240186..13240275 5..95 95 -> Plus
2L 13240336..13240710 96..470 100 -> Plus
2L 13240763..13240909 471..617 100 -> Plus
2L 13241504..13241657 618..773 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:14:27 Download gff for BO14854.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13240186..13240275 5..95 95 -> Plus
arm_2L 13240336..13240710 96..470 100 -> Plus
arm_2L 13240763..13240909 471..617 100 -> Plus
arm_2L 13241504..13241657 618..773 98   Plus

BO14854.complete Sequence

784 bp assembled on 2008-08-15

GenBank Submission: FJ633260

> BO14854.complete
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGGCAAGCTTTCTAGACCAT

BO14854.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 753 CG5945-PB 1..750 17..766 3750 100 Plus
CG5945-RA 753 CG5945-PA 1..750 17..766 3750 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-RB 1079 CG5945-RB 209..958 17..766 3750 100 Plus
CG5945-RA 903 CG5945-RA 79..828 17..766 3750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13240335..13240710 95..470 1880 100 Plus
2L 23513712 2L 13241503..13241652 617..766 750 100 Plus
2L 23513712 2L 13240763..13240909 471..617 735 100 Plus
2L 23513712 2L 13240197..13240275 17..95 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:48:53 has no hits.

BO14854.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:26 Download gff for BO14854.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 54..819 5..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:34 Download gff for BO14854.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 79..828 17..768 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:08 Download gff for BO14854.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 65..814 17..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:18 Download gff for BO14854.complete
Subject Subject Range Query Range Percent Splice Strand
CG5945-RA 79..828 17..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:18 Download gff for BO14854.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13240197..13240275 17..95 100 -> Plus
2L 13240336..13240710 96..470 100 -> Plus
2L 13240763..13240909 471..617 100 -> Plus
2L 13241504..13241652 618..768 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:34 Download gff for BO14854.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13240197..13240275 17..95 100 -> Plus
arm_2L 13240336..13240710 96..470 100 -> Plus
arm_2L 13240763..13240909 471..617 100 -> Plus
arm_2L 13241504..13241652 618..768 98   Plus

BO14854.pep Sequence

Translation from 16 to 784

> BO14854.pep
MYCTIGLLSLLALGCSAAPTDKNYFADLPKCSTEEDQLGECVKQLFNTLT
PRLKDGNPELRIEPYEPLHLNRTSFQYSSGTVNGRITVRNAKIYGFSSNR
AKEVSVKLNGDKVKLRLVTQMPKLNIVGSYKADMQVNQLQLKPKGEFNVT
LLDVEAITVTDGEVYEKDGHRFFRLKNIDSKPKIKDLVIKANGIFADPEL
DKIALNVANQYWRDIYGIMLPETRQFWQPLMLRMFNEAFELVPIDQFLKE
ASFLDH

BO14854.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG5945-PB 250 CG5945-PB 1..250 1..250 1301 100 Plus
CG5945-PA 250 CG5945-PA 1..250 1..250 1301 100 Plus
CG5867-PA 262 CG5867-PA 38..259 27..248 506 39.6 Plus
CG16820-PA 309 CG16820-PA 84..307 27..248 351 30.8 Plus
CG10407-PB 259 CG10407-PB 38..222 28..213 199 27.3 Plus