Clone Sequence Records
BO14854.3prime Sequence
782 bp (781 high quality bases) assembled on 2006-06-16
> BO14854.3prime
ATGGTCTAGAAAGCTTGCCTCCTTGAGAAACTGGTCGATGGGAACTAGTT
CGAATGCCTCGTTGAACATTCGCAACATAAGGGGTTGCCAAAACTGTCGA
GTCTCAGGCAACATTATTCCGTAAATATCGCGCCAATACTGATTAGCCAC
ATTCAGAGCGATTTTATCCAGTTCAGGATCTGCAAATATTCCGTTTGCCT
TGATAACCAAGTCCTTGATCTTTGGCTTTGAGTCGATATTCTTGAGGCGG
AAAAACCGATGACCATCCTTCTCGTAGACCTCACCATCGGTCACCGTTAT
GGCCTCCACATCCAAGAGCGTTACGTTGAATTCACCCTTGGGCTTCAGTT
GCAGCTGATTCACCTGCATGTCGGCCTTATAGCTGCCCACAATGTTCAAC
TTGGGCATTTGGGTGACCAGACGGAGTTTCACCTTGTCGCCATTGAGTTT
GACGGACACCTCTTTGGCCCGATTGGAGGAGAAGCCATAAATCTTGGCAT
TGCGAACGGTGATGCGACCATTGACAGTGCCACTAGAGTATTGGAAGCTG
GTTCGGTTGAGGTGCAAAGGTTCGTAGGGCTCGATTCTCAACTCTGGATT
ACCGTCCTTGAGGCGCGGAGTCAATGTGTTAAACAGCTGCTTCACGCACT
CACCCAGCTGATCCTCTTCAGTCGAGCATTTTGGCAAATCAGCAAAGTAG
TTTTTATCCGTGGGAGCTGCACTGCATCCCAAGGCCAGCAGGCTGAGCAA
TCCAATAGTACAATACATGTCGACTGATAACT
BO14854.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-PA | 753 | CG5945-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 1079 | CG5945-RB | 209..958 | 768..19 | 3750 | 100 | Minus |
CG5945-RA | 903 | CG5945-RA | 79..828 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13240335..13240710 | 690..315 | 1880 | 100 | Minus |
2L | 23513712 | 2L | 13241503..13241652 | 168..19 | 750 | 100 | Minus |
2L | 23513712 | 2L | 13240763..13240909 | 314..168 | 735 | 100 | Minus |
2L | 23513712 | 2L | 13240197..13240275 | 768..690 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:30:19 has no hits.
BO14854.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:00 Download gff for
BO14854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-PA | 1..753 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:23 Download gff for
BO14854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-PA | 1..753 | 18..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:53:47 Download gff for
BO14854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 65..833 | 12..782 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:11:55 Download gff for
BO14854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 65..833 | 12..782 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:11:55 Download gff for
BO14854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13240183..13240275 | 690..782 | 94 | -> | Minus |
2L | 13240336..13240710 | 315..689 | 100 | -> | Minus |
2L | 13240763..13240909 | 168..314 | 100 | -> | Minus |
2L | 13241504..13241657 | 12..167 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:53:47 Download gff for
BO14854.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13241504..13241657 | 12..167 | 98 | | Minus |
arm_2L | 13240183..13240275 | 690..782 | 94 | -> | Minus |
arm_2L | 13240336..13240710 | 315..689 | 100 | -> | Minus |
arm_2L | 13240763..13240909 | 168..314 | 100 | -> | Minus |
BO14854.5prime Sequence
782 bp (749 high quality bases) assembled on 2006-06-16
> BO14854.5prime
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGGCAAGCTTTCTAGACC
BO14854.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-PA | 753 | CG5945-RA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 11:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 1079 | CG5945-RB | 209..958 | 17..766 | 3750 | 100 | Plus |
CG5945-RA | 903 | CG5945-RA | 79..828 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 11:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13240335..13240710 | 95..470 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13241503..13241652 | 617..766 | 750 | 100 | Plus |
2L | 23513712 | 2L | 13240763..13240909 | 471..617 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13240197..13240275 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 11:37:16 has no hits.
BO14854.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:41:50 Download gff for
BO14854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-PA | 1..753 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:14:27 Download gff for
BO14854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 68..833 | 5..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:32:42 Download gff for
BO14854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 68..833 | 5..773 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 12:32:42 Download gff for
BO14854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13240186..13240275 | 5..95 | 95 | -> | Plus |
2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
2L | 13241504..13241657 | 618..773 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:14:27 Download gff for
BO14854.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13240186..13240275 | 5..95 | 95 | -> | Plus |
arm_2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
arm_2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
arm_2L | 13241504..13241657 | 618..773 | 98 | | Plus |
BO14854.complete Sequence
784 bp assembled on 2008-08-15
GenBank Submission: FJ633260
> BO14854.complete
GAAGTTATCAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGG
CCTTGGGATGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTG
CCAAAATGCTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCT
GTTTAACACATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAA
TCGAGCCCTACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCT
AGTGGCACTGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGG
CTTCTCCTCCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACA
AGGTGAAACTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGC
AGCTATAAGGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGG
TGAATTCAACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATG
GTGAGGTCTACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATC
GACTCAAAGCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATT
TGCAGATCCTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATT
GGCGCGATATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAA
CCCCTTATGTTGCGAATGTTCAACGAGGCATTCGAACTAGTTCCCATCGA
CCAGTTTCTCAAGGAGGCAAGCTTTCTAGACCAT
BO14854.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:48:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 753 | CG5945-PB | 1..750 | 17..766 | 3750 | 100 | Plus |
CG5945-RA | 753 | CG5945-PA | 1..750 | 17..766 | 3750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:48:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-RB | 1079 | CG5945-RB | 209..958 | 17..766 | 3750 | 100 | Plus |
CG5945-RA | 903 | CG5945-RA | 79..828 | 17..766 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:48:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13240335..13240710 | 95..470 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13241503..13241652 | 617..766 | 750 | 100 | Plus |
2L | 23513712 | 2L | 13240763..13240909 | 471..617 | 735 | 100 | Plus |
2L | 23513712 | 2L | 13240197..13240275 | 17..95 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:48:53 has no hits.
BO14854.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:26 Download gff for
BO14854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 54..819 | 5..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:34 Download gff for
BO14854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 79..828 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:56:08 Download gff for
BO14854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 65..814 | 17..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:32:18 Download gff for
BO14854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5945-RA | 79..828 | 17..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:32:18 Download gff for
BO14854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13240197..13240275 | 17..95 | 100 | -> | Plus |
2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
2L | 13241504..13241652 | 618..768 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:34 Download gff for
BO14854.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13240197..13240275 | 17..95 | 100 | -> | Plus |
arm_2L | 13240336..13240710 | 96..470 | 100 | -> | Plus |
arm_2L | 13240763..13240909 | 471..617 | 100 | -> | Plus |
arm_2L | 13241504..13241652 | 618..768 | 98 | | Plus |
BO14854.pep Sequence
Translation from 16 to 784
> BO14854.pep
MYCTIGLLSLLALGCSAAPTDKNYFADLPKCSTEEDQLGECVKQLFNTLT
PRLKDGNPELRIEPYEPLHLNRTSFQYSSGTVNGRITVRNAKIYGFSSNR
AKEVSVKLNGDKVKLRLVTQMPKLNIVGSYKADMQVNQLQLKPKGEFNVT
LLDVEAITVTDGEVYEKDGHRFFRLKNIDSKPKIKDLVIKANGIFADPEL
DKIALNVANQYWRDIYGIMLPETRQFWQPLMLRMFNEAFELVPIDQFLKE
ASFLDH
BO14854.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5945-PB | 250 | CG5945-PB | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5945-PA | 250 | CG5945-PA | 1..250 | 1..250 | 1301 | 100 | Plus |
CG5867-PA | 262 | CG5867-PA | 38..259 | 27..248 | 506 | 39.6 | Plus |
CG16820-PA | 309 | CG16820-PA | 84..307 | 27..248 | 351 | 30.8 | Plus |
CG10407-PB | 259 | CG10407-PB | 38..222 | 28..213 | 199 | 27.3 | Plus |