Clone BO14857 Report

Search the DGRC for BO14857

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCdk9-RA
Protein status:BO14857.pep: validated full length
Sequenced Size:1246

Clone Sequence Records

BO14857.3prime Sequence

838 bp (793 high quality bases) assembled on 2006-06-16

> BO14857.3prime
ATGGTCTAGAAAGCTTGCCCAAACCCGGTCAATCATACTGTTGTCCTGGG
GCTTCTGGTTCATGGTGGTCAGTTGCTGGTGATAGTTGCGCATCTGGTTG
CTGCGGCGTGGCTGCGCCAGGTACTCGAACATGCTCTGCAGGTGCTGGGA
CAGCATCTTGCTCAAGTCGCTGGGCATGGGATCCGTCCAGAAGAAGTCGT
GATTCAGAGCTGTGTCCGCATCGATGCGTTTCTTGGGATCAAGGGTCAGC
AATTTGTCCAATAGATCACAGCCGGTTTGATCCTTGACATACGGACGCAG
GCGCTCCTTGACTCGACGCTTCTGGTTCTTTGGCAGCTCGATGGATTTGT
ACAGCTCCAGCTCCTCCACTCCCGGCCACACGTCCGGCGTAAAGGAGCCG
CATAGCTGCGAGATAAAGGTTAGCTGCTGCTGCTCCGTATTGCCTTGCAT
GATGGGCGAGCGTGTCCACATCTCGGCCATTATGCAGCCGGCTCCCCACA
TGTCCACGGGTGGACCATAGTTGCGGTCACCAAGTAGCAGCTCAGGCGGC
CGGTACCACAAGGTTACTACGCGATTGGTATAGCGATTCTTACTCTCGTT
CTTTGGAATGCTAAAAGCACGGGCCAAGCCAAAGTCAGCCAGCTTTAAGA
TGCCATGCTTGGTAATCAGCACGTTGGCAGCTTTCATGTCTCGGTGCAGG
ATCTTGTTGCTGTGGATGTAATACAAACCGTTTAAAAGCTGCTGCATAAC
CTTCTTAATCTCGCCCAGACTGAACTTGACGTTCATGTTGGACAGAAGAC
CTGCCAAATCGTGTTCGCAGAAATCAAAGACCAAATAG

BO14857.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG5179-PA 1215 Cdk9-RA 393..1212 838..19 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:06:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1476 CG5179-RA 530..1349 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22636190..22636875 19..704 3430 100 Plus
2R 25286936 2R 22636942..22637077 703..838 680 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:06:35 has no hits.

BO14857.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:03 Download gff for BO14857.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-PA 393..1215 18..838 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:28 Download gff for BO14857.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5179-PA 393..1215 18..838 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:13 Download gff for BO14857.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 530..1349 19..838 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:38 Download gff for BO14857.3prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 530..1349 19..838 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:38 Download gff for BO14857.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22636190..22636873 19..702 100 <- Plus
2R 22636942..22637077 703..838 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:13 Download gff for BO14857.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18523695..18524378 19..702 100 <- Plus
arm_2R 18524447..18524582 703..838 100   Plus

BO14857.5prime Sequence

872 bp (798 high quality bases) assembled on 2006-06-16

> BO14857.5prime
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGC
TCCTTTACGCCGGACGTGTGGC

BO14857.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5179-PA 1215 Cdk9-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1476 CG5179-RA 137..993 16..872 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22636546..22636875 872..543 1650 100 Minus
2R 25286936 2R 22636942..22637199 544..287 1290 100 Minus
2R 25286936 2R 22637406..22637591 201..16 930 100 Minus
2R 25286936 2R 22637259..22637344 286..201 430 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:48:03 has no hits.

BO14857.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:04 Download gff for BO14857.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:30 Download gff for BO14857.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5179-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:11 Download gff for BO14857.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 137..993 16..872 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:08 Download gff for BO14857.5prime
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 137..993 16..872 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:08 Download gff for BO14857.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22636546..22636873 545..872 100 <- Minus
2R 22636942..22637199 287..544 100 <- Minus
2R 22637259..22637343 202..286 100 <- Minus
2R 22637406..22637591 16..201 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:11 Download gff for BO14857.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18524911..18525096 16..201 100   Minus
arm_2R 18524051..18524378 545..872 100 <- Minus
arm_2R 18524447..18524704 287..544 100 <- Minus
arm_2R 18524764..18524848 202..286 100 <- Minus

BO14857.complete Sequence

1246 bp (1246 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633261

> BO14857.complete
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGC
TCCTTTACGCCGGACGTGTGGCCGGGAGTGGAGGAGCTGGAGCTGTACAA
ATCCATCGAGCTGCCAAAGAACCAGAAGCGTCGAGTCAAGGAGCGCCTGC
GTCCGTATGTCAAGGATCAAACCGGCTGTGATCTATTGGACAAATTGCTG
ACCCTTGATCCCAAGAAACGCATCGATGCGGACACAGCTCTGAATCACGA
CTTCTTCTGGACGGATCCCATGCCCAGCGACTTGAGCAAGATGCTGTCCC
AGCACCTGCAGAGCATGTTCGAGTACCTGGCGCAGCCACGCCGCAGCAAC
CAGATGCGCAACTATCACCAGCAACTGACCACCATGAACCAGAAGCCCCA
GGACAACAGTATGATTGACCGGGTTTGGGCAAGCTTTCTAGACCAT

BO14857.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1215 CG5179-PA 1..1212 17..1228 6060 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-RA 1476 CG5179-RA 137..1349 16..1228 6065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22636190..22636875 1228..543 3430 100 Minus
2R 25286936 2R 22636942..22637199 544..287 1290 100 Minus
2R 25286936 2R 22637406..22637591 201..16 930 100 Minus
2R 25286936 2R 22637259..22637344 286..201 430 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:38:21 has no hits.

BO14857.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:23 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 1..1215 17..1229 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:06 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 133..1345 16..1228 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:49 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 138..1349 17..1230 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:24 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 133..1345 16..1228 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:05 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
Cdk9-RA 138..1349 17..1230 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:05 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22637406..22637590 17..201 100   Minus
2R 22636188..22636873 545..1230 99 <- Minus
2R 22636942..22637199 287..544 100 <- Minus
2R 22637259..22637343 202..286 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:49 Download gff for BO14857.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18523693..18524378 545..1230 99 <- Minus
arm_2R 18524447..18524704 287..544 100 <- Minus
arm_2R 18524764..18524848 202..286 100 <- Minus
arm_2R 18524911..18525095 17..201 100   Minus

BO14857.pep Sequence

Translation from 16 to 1246

> BO14857.pep
MAHMSHMLQQPSGSTPSNVGSSSSRTMSLMEKQKYIEDYDFPYCDESNKY
EKVAKIGQGTFGEVFKAREKKGNKKFVAMKKVLMDNEKEGFPITALREIR
ILQLLKHENVVNLIEICRTKATATNGYRSTFYLVFDFCEHDLAGLLSNMN
VKFSLGEIKKVMQQLLNGLYYIHSNKILHRDMKAANVLITKHGILKLADF
GLARAFSIPKNESKNRYTNRVVTLWYRPPELLLGDRNYGPPVDMWGAGCI
MAEMWTRSPIMQGNTEQQQLTFISQLCGSFTPDVWPGVEELELYKSIELP
KNQKRRVKERLRPYVKDQTGCDLLDKLLTLDPKKRIDADTALNHDFFWTD
PMPSDLSKMLSQHLQSMFEYLAQPRRSNQMRNYHQQLTTMNQKPQDNSMI
DRVWASFLDH

BO14857.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Cdk9-PA 404 CG5179-PA 1..404 1..404 2136 100 Plus
Cdk12-PC 1157 CG7597-PC 804..1136 50..387 719 44.6 Plus
Cdk12-PA 1157 CG7597-PA 804..1136 50..387 719 44.6 Plus
Cdk12-PB 1157 CG7597-PB 804..1136 50..387 719 44.6 Plus
cdc2rk-PA 387 CG1362-PA 44..349 41..359 592 39.5 Plus