Clone Sequence Records
BO14857.3prime Sequence
838 bp (793 high quality bases) assembled on 2006-06-16
> BO14857.3prime
ATGGTCTAGAAAGCTTGCCCAAACCCGGTCAATCATACTGTTGTCCTGGG
GCTTCTGGTTCATGGTGGTCAGTTGCTGGTGATAGTTGCGCATCTGGTTG
CTGCGGCGTGGCTGCGCCAGGTACTCGAACATGCTCTGCAGGTGCTGGGA
CAGCATCTTGCTCAAGTCGCTGGGCATGGGATCCGTCCAGAAGAAGTCGT
GATTCAGAGCTGTGTCCGCATCGATGCGTTTCTTGGGATCAAGGGTCAGC
AATTTGTCCAATAGATCACAGCCGGTTTGATCCTTGACATACGGACGCAG
GCGCTCCTTGACTCGACGCTTCTGGTTCTTTGGCAGCTCGATGGATTTGT
ACAGCTCCAGCTCCTCCACTCCCGGCCACACGTCCGGCGTAAAGGAGCCG
CATAGCTGCGAGATAAAGGTTAGCTGCTGCTGCTCCGTATTGCCTTGCAT
GATGGGCGAGCGTGTCCACATCTCGGCCATTATGCAGCCGGCTCCCCACA
TGTCCACGGGTGGACCATAGTTGCGGTCACCAAGTAGCAGCTCAGGCGGC
CGGTACCACAAGGTTACTACGCGATTGGTATAGCGATTCTTACTCTCGTT
CTTTGGAATGCTAAAAGCACGGGCCAAGCCAAAGTCAGCCAGCTTTAAGA
TGCCATGCTTGGTAATCAGCACGTTGGCAGCTTTCATGTCTCGGTGCAGG
ATCTTGTTGCTGTGGATGTAATACAAACCGTTTAAAAGCTGCTGCATAAC
CTTCTTAATCTCGCCCAGACTGAACTTGACGTTCATGTTGGACAGAAGAC
CTGCCAAATCGTGTTCGCAGAAATCAAAGACCAAATAG
BO14857.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5179-PA | 1215 | Cdk9-RA | 393..1212 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1476 | CG5179-RA | 530..1349 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:06:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22636190..22636875 | 19..704 | 3430 | 100 | Plus |
2R | 25286936 | 2R | 22636942..22637077 | 703..838 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:06:35 has no hits.
BO14857.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:03 Download gff for
BO14857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-PA | 393..1215 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:28 Download gff for
BO14857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5179-PA | 393..1215 | 18..838 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:49:13 Download gff for
BO14857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 530..1349 | 19..838 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:38 Download gff for
BO14857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 530..1349 | 19..838 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:38 Download gff for
BO14857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22636190..22636873 | 19..702 | 100 | <- | Plus |
2R | 22636942..22637077 | 703..838 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:49:13 Download gff for
BO14857.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18523695..18524378 | 19..702 | 100 | <- | Plus |
arm_2R | 18524447..18524582 | 703..838 | 100 | | Plus |
BO14857.5prime Sequence
872 bp (798 high quality bases) assembled on 2006-06-16
> BO14857.5prime
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGC
TCCTTTACGCCGGACGTGTGGC
BO14857.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5179-PA | 1215 | Cdk9-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:48:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1476 | CG5179-RA | 137..993 | 16..872 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22636546..22636875 | 872..543 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 22636942..22637199 | 544..287 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 22637406..22637591 | 201..16 | 930 | 100 | Minus |
2R | 25286936 | 2R | 22637259..22637344 | 286..201 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:48:03 has no hits.
BO14857.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:04 Download gff for
BO14857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:30 Download gff for
BO14857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5179-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:34:11 Download gff for
BO14857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 137..993 | 16..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:14:08 Download gff for
BO14857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 137..993 | 16..872 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:14:08 Download gff for
BO14857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22636546..22636873 | 545..872 | 100 | <- | Minus |
2R | 22636942..22637199 | 287..544 | 100 | <- | Minus |
2R | 22637259..22637343 | 202..286 | 100 | <- | Minus |
2R | 22637406..22637591 | 16..201 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:34:11 Download gff for
BO14857.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18524911..18525096 | 16..201 | 100 | | Minus |
arm_2R | 18524051..18524378 | 545..872 | 100 | <- | Minus |
arm_2R | 18524447..18524704 | 287..544 | 100 | <- | Minus |
arm_2R | 18524764..18524848 | 202..286 | 100 | <- | Minus |
BO14857.complete Sequence
1246 bp (1246 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633261
> BO14857.complete
GAAGTTATCAGTCGACATGGCGCACATGTCCCACATGCTCCAGCAGCCTT
CGGGGTCGACGCCCTCCAACGTGGGCTCCAGCTCATCGCGCACGATGTCC
CTGATGGAGAAACAAAAGTACATCGAGGACTACGACTTTCCCTACTGCGA
CGAGAGCAACAAATACGAAAAGGTGGCGAAAATTGGCCAAGGCACCTTCG
GAGAGGTTTTTAAGGCTCGCGAGAAAAAGGGCAACAAGAAGTTTGTGGCC
ATGAAGAAGGTGCTGATGGACAACGAAAAGGAGGGCTTTCCCATCACGGC
TCTGCGAGAGATCCGCATCCTGCAGCTGCTAAAGCACGAGAACGTGGTGA
ATCTGATCGAGATCTGCCGCACCAAGGCCACCGCCACGAATGGTTACAGA
TCCACCTTCTATTTGGTCTTTGATTTCTGCGAACACGATTTGGCAGGTCT
TCTGTCCAACATGAACGTCAAGTTCAGTCTGGGCGAGATTAAGAAGGTTA
TGCAGCAGCTTTTAAACGGTTTGTATTACATCCACAGCAACAAGATCCTG
CACCGAGACATGAAAGCTGCCAACGTGCTGATTACCAAGCATGGCATCTT
AAAGCTGGCTGACTTTGGCTTGGCCCGTGCTTTTAGCATTCCAAAGAACG
AGAGTAAGAATCGCTATACCAATCGCGTAGTAACCTTGTGGTACCGGCCG
CCTGAGCTGCTACTTGGTGACCGCAACTATGGTCCACCCGTGGACATGTG
GGGAGCCGGCTGCATAATGGCCGAGATGTGGACACGCTCGCCCATCATGC
AAGGCAATACGGAGCAGCAGCAGCTAACCTTTATCTCGCAGCTATGCGGC
TCCTTTACGCCGGACGTGTGGCCGGGAGTGGAGGAGCTGGAGCTGTACAA
ATCCATCGAGCTGCCAAAGAACCAGAAGCGTCGAGTCAAGGAGCGCCTGC
GTCCGTATGTCAAGGATCAAACCGGCTGTGATCTATTGGACAAATTGCTG
ACCCTTGATCCCAAGAAACGCATCGATGCGGACACAGCTCTGAATCACGA
CTTCTTCTGGACGGATCCCATGCCCAGCGACTTGAGCAAGATGCTGTCCC
AGCACCTGCAGAGCATGTTCGAGTACCTGGCGCAGCCACGCCGCAGCAAC
CAGATGCGCAACTATCACCAGCAACTGACCACCATGAACCAGAAGCCCCA
GGACAACAGTATGATTGACCGGGTTTGGGCAAGCTTTCTAGACCAT
BO14857.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1215 | CG5179-PA | 1..1212 | 17..1228 | 6060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-RA | 1476 | CG5179-RA | 137..1349 | 16..1228 | 6065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22636190..22636875 | 1228..543 | 3430 | 100 | Minus |
2R | 25286936 | 2R | 22636942..22637199 | 544..287 | 1290 | 100 | Minus |
2R | 25286936 | 2R | 22637406..22637591 | 201..16 | 930 | 100 | Minus |
2R | 25286936 | 2R | 22637259..22637344 | 286..201 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:21 has no hits.
BO14857.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:23 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 1..1215 | 17..1229 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:06 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 133..1345 | 16..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:49 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 138..1349 | 17..1230 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:24 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 133..1345 | 16..1228 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:02:05 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cdk9-RA | 138..1349 | 17..1230 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:02:05 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22637406..22637590 | 17..201 | 100 | | Minus |
2R | 22636188..22636873 | 545..1230 | 99 | <- | Minus |
2R | 22636942..22637199 | 287..544 | 100 | <- | Minus |
2R | 22637259..22637343 | 202..286 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:49 Download gff for
BO14857.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18523693..18524378 | 545..1230 | 99 | <- | Minus |
arm_2R | 18524447..18524704 | 287..544 | 100 | <- | Minus |
arm_2R | 18524764..18524848 | 202..286 | 100 | <- | Minus |
arm_2R | 18524911..18525095 | 17..201 | 100 | | Minus |
BO14857.pep Sequence
Translation from 16 to 1246
> BO14857.pep
MAHMSHMLQQPSGSTPSNVGSSSSRTMSLMEKQKYIEDYDFPYCDESNKY
EKVAKIGQGTFGEVFKAREKKGNKKFVAMKKVLMDNEKEGFPITALREIR
ILQLLKHENVVNLIEICRTKATATNGYRSTFYLVFDFCEHDLAGLLSNMN
VKFSLGEIKKVMQQLLNGLYYIHSNKILHRDMKAANVLITKHGILKLADF
GLARAFSIPKNESKNRYTNRVVTLWYRPPELLLGDRNYGPPVDMWGAGCI
MAEMWTRSPIMQGNTEQQQLTFISQLCGSFTPDVWPGVEELELYKSIELP
KNQKRRVKERLRPYVKDQTGCDLLDKLLTLDPKKRIDADTALNHDFFWTD
PMPSDLSKMLSQHLQSMFEYLAQPRRSNQMRNYHQQLTTMNQKPQDNSMI
DRVWASFLDH
BO14857.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cdk9-PA | 404 | CG5179-PA | 1..404 | 1..404 | 2136 | 100 | Plus |
Cdk12-PC | 1157 | CG7597-PC | 804..1136 | 50..387 | 719 | 44.6 | Plus |
Cdk12-PA | 1157 | CG7597-PA | 804..1136 | 50..387 | 719 | 44.6 | Plus |
Cdk12-PB | 1157 | CG7597-PB | 804..1136 | 50..387 | 719 | 44.6 | Plus |
cdc2rk-PA | 387 | CG1362-PA | 44..349 | 41..359 | 592 | 39.5 | Plus |