Clone Sequence Records
BO14858.3prime Sequence
476 bp (476 high quality bases) assembled on 2006-06-16
> BO14858.3prime
ATGGTCTAGAAAGCTTGCCTGAATTTTAGCGGGAATCTCGACGCAGATGA
TGTCCGCTCCGTCCTGATCCTGCAGCTCCCACTTGACCAGCACGGACACT
TTGGGGTAGGATCTCAGCACCGGCAGGGTGGCCGTGTAGCGGTACGACTC
GTCCTTCTCCAACGGGCACTTCAGACCACTGTCCACACAGGCATCGGGAT
TGGCCAGCGGGAAGGGCATCTCGATGCCCAGGACCTTGCCGTGGACGACT
GTCTTCACCGCCGTTGCCTCCTCGGCCAGGGCGAAGTCGATGGAGAAGCT
GACCGTGGTGTTCCTCTTGAGGATGCACTCCGCCTTGGTGGTGTCGCAGC
CCTCGATGGCCACCCGGGTGAACTTGCCCGTCTTCGATCCGCAATCGCTG
AACTCGAGGGCTCCGGCGAAGACCACCAGTGCAGCACAGGCAATTACCGC
GTACCTCAGCATGTCGACTGATAACT
BO14858.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7291-PA | 447 | NPC2-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:43:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2a-RA | 651 | CG7291-RA | 100..543 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:43:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1988389..1988832 | 462..19 | 2220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:43:41 has no hits.
BO14858.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:05 Download gff for
BO14858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPC2-PA | 1..447 | 18..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:31 Download gff for
BO14858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7291-PA | 1..447 | 18..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:57 Download gff for
BO14858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2a-RA | 95..548 | 13..469 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:04:31 Download gff for
BO14858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2a-RA | 95..548 | 13..469 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:04:31 Download gff for
BO14858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1988384..1988837 | 13..469 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:57 Download gff for
BO14858.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1988384..1988837 | 13..469 | 98 | | Minus |
BO14858.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-06-16
> BO14858.5prime
GAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTGCAC
TGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAGACG
GGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGCGGA
GTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCGCCC
TGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTCCTG
GGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGACAG
TGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGGCCA
CCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAGTGG
GAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCCCGC
TAAAATTCAGGCAAGCTTTCTAGACC
BO14858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7291-PA | 447 | NPC2-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 09:25:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2a-RA | 651 | CG7291-RA | 100..543 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 09:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1988389..1988832 | 17..460 | 2220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 09:24:59 has no hits.
BO14858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:06 Download gff for
BO14858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPC2-PA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:33 Download gff for
BO14858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7291-PA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:30:17 Download gff for
BO14858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2a-RA | 95..548 | 10..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:07:37 Download gff for
BO14858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2a-RA | 95..548 | 10..466 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:07:37 Download gff for
BO14858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1988384..1988837 | 10..466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:30:17 Download gff for
BO14858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1988384..1988837 | 10..466 | 98 | | Plus |
BO14858.complete Sequence
478 bp (478 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633262
> BO14858.complete
GAAGTTATCAGTCGACATGCTGAGGTACGCGGTAATTGCCTGTGCTGCAC
TGGTGGTCTTCGCCGGAGCCCTCGAGTTCAGCGATTGCGGATCGAAGACG
GGCAAGTTCACCCGGGTGGCCATCGAGGGCTGCGACACCACCAAGGCGGA
GTGCATCCTCAAGAGGAACACCACGGTCAGCTTCTCCATCGACTTCGCCC
TGGCCGAGGAGGCAACGGCGGTGAAGACAGTCGTCCACGGCAAGGTCCTG
GGCATCGAGATGCCCTTCCCGCTGGCCAATCCCGATGCCTGTGTGGACAG
TGGTCTGAAGTGCCCGTTGGAGAAGGACGAGTCGTACCGCTACACGGCCA
CCCTGCCGGTGCTGAGATCCTACCCCAAAGTGTCCGTGCTGGTCAAGTGG
GAGCTGCAGGATCAGGACGGAGCGGACATCATCTGCGTCGAGATTCCCGC
TAAAATTCAGGCAAGCTTTCTAGACCAT
BO14858.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2a-RA | 447 | CG7291-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2a-RA | 651 | CG7291-RA | 100..543 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1988389..1988832 | 17..460 | 2220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:09 has no hits.
BO14858.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:57:15 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPC2-RA | 1..447 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:29:52 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPC2-RA | 94..547 | 10..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:24:46 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2a-RA | 100..543 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:57:16 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NPC2-RA | 94..547 | 10..466 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:55:55 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Npc2a-RA | 100..543 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:55:55 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1988389..1988832 | 17..462 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:24:46 Download gff for
BO14858.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1988389..1988832 | 17..462 | 99 | | Plus |
BO14858.pep Sequence
Translation from 16 to 478
> BO14858.pep
MLRYAVIACAALVVFAGALEFSDCGSKTGKFTRVAIEGCDTTKAECILKR
NTTVSFSIDFALAEEATAVKTVVHGKVLGIEMPFPLANPDACVDSGLKCP
LEKDESYRYTATLPVLRSYPKVSVLVKWELQDQDGADIICVEIPAKIQAS
FLDH
BO14858.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Npc2a-PA | 148 | CG7291-PA | 1..148 | 1..148 | 762 | 100 | Plus |
| Npc2b-PA | 159 | CG3153-PA | 12..159 | 10..149 | 182 | 33.1 | Plus |
| Npc2b-PB | 159 | CG3153-PB | 12..159 | 10..149 | 182 | 33.1 | Plus |
