Clone Sequence Records
BO14859.3prime Sequence
903 bp (800 high quality bases) assembled on 2006-06-16
> BO14859.3prime
ATGGTCTAGAAAGCTTGCGGCGGAGGCTTGCTGCCGTCGCCGGATCTCGG
CGGCCAGATCCTCAAGCTTTACGTTGGTCTCCTCGCGCGTGGTCACCTCA
CGCAGTTTGACCAATCCCTGCGCCAGCTCTGCGTCGCCGAGGACAACCAC
CAGAGGAATCTGGTGCTCCTCGCAGTGCTGCAGCTGTACTAACAGCTTAG
GGTTCAGCTTGTAAGAGTGCTCCGCCTTCACGCCCGCATCCCACAGCAGG
TTCAGAACCTTCAGACGCTGCTCGTGGAGACCCTTGTGGGCGGAGGCCAC
GTAAACCTCCACGTCGCTGGTTCGCAACTTCAGACCGCTTGCAGCCGCCC
GCGCCTCCAGAACCGAGAAAATGCGCTCCACGCCAATAGACACGCCCACG
CAGGGCACAGCCTTGCCGCGCGGATCGAACATGCCCACCAGGTTGTCGTA
GCGACCGCCTCCAGCCACGGATCCCACGGTGGCCGGCTCGTTCGCCTGCT
CTCCGTTCTGCTGTGATGTCTTCGCCGGAGATGCCACGGTGGCGGACTCT
CCCTTGAGCACACCTTCGTAGATAACACCGGTGTAGTAGTCCAGGCCACG
GGCCAGACTCAAATCGAAGCTAACTCGCTTATCCAGACCGAATATGGAAC
AGTACTTAAGGAGCTGCTTCATGCCCTCCAGACCCTTTACGGCATTTGGC
ACAGCCTTGAGCTTCTCGTTGGCCAGCAGTTGTTCCACCAGCTCGGCACC
GCCGCTCAGTCGCACGTACTCGCCAATTCGATCCGCTGCTGCCTCGTCCA
GACCCTTCTCATCCACCATCTCCTTGCGCACATCCGCCCAGGGCGACTTA
TCCAACTTATCCACCGCTGAGCAGATGGTGCGGAAGCTATCCGCCGGGAC
TCC
BO14859.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6335-PB | 1692 | Aats-his-RB | 805..1689 | 903..19 | 4400 | 99.8 | Minus |
CG6335-PA | 1569 | Aats-his-RA | 682..1566 | 903..19 | 4400 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:28:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-his-RE | 2862 | CG6335-RE | 1728..2612 | 903..19 | 4410 | 99.9 | Minus |
Aats-his-RD | 2104 | CG6335-RD | 970..1854 | 903..19 | 4410 | 99.9 | Minus |
Aats-his-RC | 2250 | CG6335-RC | 1116..2000 | 903..19 | 4410 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:28:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18519313..18519936 | 848..225 | 3120 | 100 | Minus |
X | 23542271 | X | 18519987..18520195 | 227..19 | 1045 | 100 | Minus |
X | 23542271 | X | 18519197..18519253 | 903..847 | 270 | 98.2 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:28:22 has no hits.
BO14859.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:07 Download gff for
BO14859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6335-PA | 682..1569 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:34 Download gff for
BO14859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6335-PA | 682..1569 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:52:12 Download gff for
BO14859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RC | 1116..2006 | 12..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:34:16 Download gff for
BO14859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RC | 1116..2006 | 12..903 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:34:16 Download gff for
BO14859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18519197..18519253 | 847..903 | 98 | -> | Minus |
X | 18519315..18519935 | 226..846 | 100 | -> | Minus |
X | 18519989..18520201 | 12..225 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:52:12 Download gff for
BO14859.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18413230..18413286 | 847..903 | 98 | -> | Minus |
arm_X | 18413348..18413968 | 226..846 | 100 | -> | Minus |
arm_X | 18414022..18414234 | 12..225 | 98 | | Minus |
BO14859.5prime Sequence
863 bp (803 high quality bases) assembled on 2006-06-16
> BO14859.5prime
GAAGTTATCAGTCGACATGAGTGATACGCGTGAGCAGATTCTGGAGCAAA
TCAAAGTGCAAGGCGATCTCGTCCGTCAATTGAAAGCAGCGAAGGAGTCG
AAGGAGAAGATCGATGAGGAGGTCGCCCGCCTACTGGCCCTAAAGGCCAC
TCTTGGCGGAGATGCCGCCCCCACCAATCAGAAGTTCACGCTAAAGACGC
CCAAAGGCACACGGGACTATGGTCCTCAGCAGATGACCCTGCGCCAGGGC
GTCCTGGACAAGATCGTCCAGGTGTTCAAGCGCCACGGCGGCGAAGCCAT
CGATACGCCCGTGTTCGAGCTGAAGGAAGTGCTGACGGGCAAGTACGGCG
AGGACTCAAAGCTGATCTACGACTTGAAGGATCAGGGCGGTGAGATCCTA
TCGATGAGGTATGACTTGACCGTGCCGCTGGCTCGTTACCTGGCGATGAA
CAAGATCTCGAGCATCAAGCGCTACCACATCGCCAAGGTCTATCGACGCG
ACAATCCGGCAATGACCAAGGGTCGCTATCGGGAGTTCTACCAATGTGAC
TTCGACATCGCCGGCACCTACGATCCCATGCTGCCGGATGCCGAGTGCGT
CAAGATTGTGTCGGAGATACTGGACACGCTGGACATTGGAGACTATGTGA
TAAAGCTAAATCACCGCCAGCTTTTGGACGGCATGTTCCAGGCGTGCGGA
GTGCCGGCGGATAGCTTCCGCACCATCTGCTCAGCGGTGGATAAGTTGGA
TAAGTCGCCCTGGGCGGATGTGCGCAAGGAGATGGTGGATGAGAAGGGTC
TGGACGAAGCAGCAGCGGATCGAATTGGCGAGTACGTGCGACTGAGCGGG
CGGTGCCGAGCTG
BO14859.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6335-PA | 1569 | Aats-his-RA | 1..833 | 17..849 | 4140 | 99.8 | Plus |
CG6335-PB | 1692 | Aats-his-RB | 433..956 | 326..849 | 2595 | 99.8 | Plus |
CG6335-PB | 1692 | Aats-his-RB | 158..376 | 108..326 | 1095 | 100 | Plus |
CG6335-PB | 1692 | Aats-his-RB | 1..93 | 17..109 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:50:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-his-RA | 1978 | CG6335-RA | 163..1008 | 17..863 | 4195 | 99.8 | Plus |
Aats-his-RE | 2862 | CG6335-RE | 1138..1892 | 108..863 | 3740 | 99.7 | Plus |
Aats-his-RD | 2104 | CG6335-RD | 380..1134 | 108..863 | 3740 | 99.7 | Plus |
Aats-his-RE | 2862 | CG6335-RE | 163..255 | 17..109 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:50:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18518823..18519253 | 324..754 | 2155 | 100 | Plus |
X | 23542271 | X | 18517809..18518027 | 108..326 | 1095 | 100 | Plus |
X | 23542271 | X | 18519313..18519422 | 753..863 | 490 | 98.2 | Plus |
X | 23542271 | X | 18515590..18515682 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:50:50 has no hits.
BO14859.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:08 Download gff for
BO14859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6335-PA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:36 Download gff for
BO14859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6335-PA | 1..846 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:52 Download gff for
BO14859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 163..1008 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:20 Download gff for
BO14859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 163..1008 | 17..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:20 Download gff for
BO14859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18515590..18515682 | 17..109 | 100 | -> | Plus |
X | 18517811..18518026 | 110..325 | 100 | -> | Plus |
X | 18518825..18519253 | 326..754 | 100 | -> | Plus |
X | 18519315..18519422 | 755..863 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:52 Download gff for
BO14859.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18409623..18409715 | 17..109 | 100 | -> | Plus |
arm_X | 18411844..18412059 | 110..325 | 100 | -> | Plus |
arm_X | 18412858..18413286 | 326..754 | 100 | -> | Plus |
arm_X | 18413348..18413455 | 755..863 | 98 | | Plus |
BO14859.complete Sequence
1600 bp (1600 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ638734
> BO14859.complete
GAAGTTATCAGTCGACATGAGTGATACGCGTGAGCAGATTCTGGAGCAAA
TCAAAGTGCAAGGCGATCTCGTCCGTCAATTGAAAGCAGCGAAGGAGTCG
AAGGAGAAGATCGATGAGGAGGTCGCCCGCCTACTGGCCCTAAAGGCCAC
TCTTGGCGGAGATGCCGCCCCCACCAATCAGAAGTTCACGCTAAAGACGC
CCAAAGGCACACGGGACTATGGTCCTCAGCAGATGACCCTGCGCCAGGGC
GTCCTGGACAAGATCGTCCAGGTGTTCAAGCGCCACGGCGGCGAAGCCAT
CGATACGCCCGTGTTCGAGCTGAAGGAAGTGCTGACGGGCAAGTACGGCG
AGGACTCAAAGCTGATCTACGACTTGAAGGATCAGGGCGGTGAGATCCTA
TCGATGAGGTATGACTTGACCGTGCCGCTGGCTCGTTACCTGGCGATGAA
CAAGATCTCGAGCATCAAGCGCTACCACATCGCCAAGGTCTATCGACGCG
ACAATCCGGCAATGACCAAGGGTCGCTATCGGGAGTTCTACCAATGTGAC
TTCGACATCGCCGGCACCTACGATCCCATGCTGCCGGATGCCGAGTGCGT
CAAGATTGTGTCGGAGATACTGGACACGCTGGACATTGGAGACTATGTGA
TAAAGCTAAATCACCGCCAGCTTTTGGACGGCATGTTCCAGGCGTGCGGA
GTGCCGGCGGATAGCTTCCGCACCATCTGCTCAGCGGTGGATAAGTTGGA
TAAGTCGCCCTGGGCGGATGTGCGCAAGGAGATGGTGGATGAGAAGGGTC
TGGACGAGGCAGCAGCGGATCGAATTGGCGAGTACGTGCGACTGAGCGGC
GGTGCCGAGCTGGTGGAACAACTGCTGGCCAACGAGAAGCTCAAGGCTGT
GCCAAATGCCGTAAAGGGTCTGGAGGGCATGAAGCAGCTCCTTAAGTACT
GTTCCATATTCGGTCTGGATAAGCGAGTTAGCTTCGATTTGAGTCTGGCC
CGTGGCCTGGACTACTACACCGGTGTTATCTACGAAGGTGTGCTCAAGGG
AGAGTCCGCCACCGTGGCATCTCCGGCGAAGACATCACAGCAGAACGGAG
AGCAGGCGAACGAGCCGGCCACCGTGGGATCCGTGGCTGGAGGCGGTCGC
TACGACAACCTGGTGGGCATGTTCGATCCGCGCGGCAAGGCTGTGCCCTG
CGTGGGCGTGTCTATTGGCGTGGAGCGCATTTTCTCGGTTCTGGAGGCGC
GGGCGGCTGCAAGCGGTCTGAAGTTGCGAACCAGCGACGTGGAGGTTTAC
GTGGCCTCCGCCCACAAGGGTCTCCACGAGCAGCGTCTGAAGGTTCTGAA
CCTGCTGTGGGATGCGGGCGTGAAGGCGGAGCACTCTTACAAGCTGAACC
CTAAGCTGTTAGTACAGCTGCAGCACTGCGAGGAGCACCAGATTCCTCTG
GTGGTTGTCCTCGGCGACGCAGAGCTGGCGCAGGGATTGGTCAAACTGCG
TGAGGTGACCACGCGCGAGGAGACCAACGTAAAGCTTGAGGATCTGGCCG
CCGAGATCCGGCGACGGCAGCAAGCCTCCGCCGCAAGCTTTCTAGACCAT
BO14859.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:59:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-his-RA | 1569 | CG6335-PA | 1..1566 | 17..1582 | 7830 | 100 | Plus |
Aats-his-RE | 1665 | CG6335-PE | 188..1662 | 108..1582 | 7375 | 100 | Plus |
Aats-his-RD | 1695 | CG6335-PD | 218..1692 | 108..1582 | 7375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:59:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-his-RA | 1978 | CG6335-RA | 163..1728 | 17..1582 | 7830 | 100 | Plus |
Aats-his-RE | 2862 | CG6335-RE | 1138..2612 | 108..1582 | 7375 | 100 | Plus |
Aats-his-RD | 2104 | CG6335-RD | 380..1854 | 108..1582 | 7375 | 100 | Plus |
Aats-his-RE | 2862 | CG6335-RE | 163..255 | 17..109 | 465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:59:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18519313..18519936 | 753..1376 | 3120 | 100 | Plus |
X | 23542271 | X | 18518823..18519253 | 324..754 | 2155 | 100 | Plus |
X | 23542271 | X | 18517809..18518027 | 108..326 | 1095 | 100 | Plus |
X | 23542271 | X | 18519987..18520195 | 1374..1582 | 1045 | 100 | Plus |
X | 23542271 | X | 18515590..18515682 | 17..109 | 465 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:59:02 has no hits.
BO14859.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:25 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 1..1569 | 17..1583 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:07 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 192..1763 | 17..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:03:52 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 163..1728 | 17..1584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:25 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 192..1763 | 17..1589 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:22 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aats-his-RA | 163..1728 | 17..1584 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:22 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18515590..18515682 | 17..109 | 100 | -> | Plus |
X | 18517811..18518026 | 110..325 | 100 | -> | Plus |
X | 18518825..18519253 | 326..754 | 100 | -> | Plus |
X | 18519315..18519935 | 755..1375 | 100 | -> | Plus |
X | 18519989..18520195 | 1376..1584 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:03:52 Download gff for
BO14859.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18409623..18409715 | 17..109 | 100 | -> | Plus |
arm_X | 18411844..18412059 | 110..325 | 100 | -> | Plus |
arm_X | 18412858..18413286 | 326..754 | 100 | -> | Plus |
arm_X | 18413348..18413968 | 755..1375 | 100 | -> | Plus |
arm_X | 18414022..18414228 | 1376..1584 | 99 | | Plus |
BO14859.pep Sequence
Translation from 16 to 1600
> BO14859.pep
MSDTREQILEQIKVQGDLVRQLKAAKESKEKIDEEVARLLALKATLGGDA
APTNQKFTLKTPKGTRDYGPQQMTLRQGVLDKIVQVFKRHGGEAIDTPVF
ELKEVLTGKYGEDSKLIYDLKDQGGEILSMRYDLTVPLARYLAMNKISSI
KRYHIAKVYRRDNPAMTKGRYREFYQCDFDIAGTYDPMLPDAECVKIVSE
ILDTLDIGDYVIKLNHRQLLDGMFQACGVPADSFRTICSAVDKLDKSPWA
DVRKEMVDEKGLDEAAADRIGEYVRLSGGAELVEQLLANEKLKAVPNAVK
GLEGMKQLLKYCSIFGLDKRVSFDLSLARGLDYYTGVIYEGVLKGESATV
ASPAKTSQQNGEQANEPATVGSVAGGGRYDNLVGMFDPRGKAVPCVGVSI
GVERIFSVLEARAAASGLKLRTSDVEVYVASAHKGLHEQRLKVLNLLWDA
GVKAEHSYKLNPKLLVQLQHCEEHQIPLVVVLGDAELAQGLVKLREVTTR
EETNVKLEDLAAEIRRRQQASAASFLDH
BO14859.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Aats-his-PA | 522 | CG6335-PA | 1..522 | 1..522 | 2648 | 100 | Plus |
Aats-his-PD | 564 | CG6335-PD | 1..564 | 1..522 | 2595 | 92.6 | Plus |
Aats-his-PE | 554 | CG6335-PE | 39..554 | 5..522 | 2507 | 96.1 | Plus |
Aats-his-PC | 554 | CG6335-PC | 39..554 | 5..522 | 2507 | 96.1 | Plus |