Clone Sequence Records
BO14867.3prime Sequence
908 bp (890 high quality bases) assembled on 2006-06-16
> BO14867.3prime
ATGGTCTAGAAAGCTTGCACCCTCCTGTCCGGATATTTCGAGCTCTTCCT
CTGCGTTAATCAGGGTCACAACGCCATCCTGCAGAGTTTTGACCAGTTCG
AACTCGGTGAAACCAAGCTTCCTCTTATTTGATATGTCCATGACACCATC
TTCCACGGTGGACAGCTCGCCGCCATCGGTGCCGCGTACCTGCAGCTGCT
GTTCCTCGGCGAGGGCGAGTAGACGATCGGGGTCCTTGCTGAGTAGCGGC
AGACGGATGTGCACCGAAGCCCGCAGGGTGGTGCCCAAATTGGTGGGGCA
AGCCGTAAGGTTTCCATAACGCGGATGCCGGGCAAAGGCCAACGTCTTCT
CCAGTTCGGTTAGACCGTTGACAAGGCGATTGTAAACATCGCCCAAGTCG
CCGCACTGTGCCATGGACATAATGTGCACATGGTCCTGGCGATTCACCCA
GATCAAGAAGGTCTCGGCGGGATTGTGGTAGACACCACGACCAGTTGGCC
AGAAACGATAGCAGCCGGCTGTGGTCAGCTTCTCATCGCCGCGCTGGAAT
AATATATGTCTCTTGACCATCTCCGCCTGGGTCTCAGCATCGATGTCCGC
CATTGTCAGATAGGAGCCAATCAGCTCGCCATCCATTGTCTCCGTGGCCG
AACGCACCTTCTCCTCCACCTCTATGAATTGCTTCTCGGTCAGTTTGGGG
AAGAAGGGCAGACCTTCGATATTGCGAGCCAATCTGATTCGTGCGGACAG
AATGTACTTGCGCTCCGGATCCAAGTTCTCGATCTCGTCCACGTTGCCAA
AGTCTGGGTCTTTCTGCAGCACATCGTTCTCGTTGTCCATCTGGCCATGA
TAGTCCTTTATGATCGGATCAAAGAGTTTGTTGAACACGTCATAGCTGTC
AGCATCTG
BO14867.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-PA | 1374 | CG4546-RA | 482..1371 | 908..19 | 4450 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:52:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-RA | 1773 | CG4546-RA | 728..1617 | 908..19 | 4450 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15847391..15848280 | 908..19 | 4450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:52:05 has no hits.
BO14867.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:12 Download gff for
BO14867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-PA | 482..1374 | 18..908 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:41 Download gff for
BO14867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-PA | 482..1374 | 18..908 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:32:37 Download gff for
BO14867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 754..1643 | 19..908 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:33:16 Download gff for
BO14867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 728..1617 | 19..908 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:33:16 Download gff for
BO14867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15847391..15848280 | 19..908 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:32:37 Download gff for
BO14867.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11673113..11674002 | 19..908 | 100 | | Minus |
BO14867.5prime Sequence
907 bp (765 high quality bases) assembled on 2006-06-16
> BO14867.5prime
GAAGTTATCAGTCGACATGACTTCGATCGAGTCAAAACGCGTCCAATATC
GAAAGTATTTGGAACGCGCCGGAGTCATCGATGCCTTAAGCAAGGCTCTG
ATTAAGCTTTACGAAGAGCAGAATAAGCCGGAGGATGCCATTCGCTTTGT
ACGCAAGTTTATGTGCGAGAGCTGCCCGGACGATGCCCAGTACGATGTAA
TGAAGAACGACCTCGAGGAGGCCAAGACCCACATCTCGAAACTGGAGCAG
GAGCTTGAACGGCTACGCGGACAAATCAAAAAGTCACCGGAGGAGTACCA
GGAGCTCACTACTGAGGGCTACAAATCGCTCATGGATGATGAGGAGAACG
TGAGCTCACTGCTGCGCAAATACCTGACTCCGGAATTGCTGGAGGAGTAC
ATGCTGGTCACCACACCTGCGCCGGTGGATGCCTACCTATACGATTGCGC
CGTCTCCGGATTCGAGCACCACGACGCGCCCGTGGGCATTTTCGCGGCAG
ATGCTGACAGCTATGACGTGTTCAACAAACTCTTTGATCCGATCATAAAG
GACTATCATGGCCAGATGGACAACGAGAACGATGTGCTGCAGAAAGACCC
AGACTTTGGCAACGTGGACGAGATCGAGAACTTGGATCCGGAGCGCAAGT
ACATTCTGTCCGCACGAATCAGATTGGCTCGCAATATCGAAGGTCTGCCC
TTCTTCCCCAAACTGACCGAGAAGCAATTCATAGAGGTGGAGGAGAAGGT
GCGTTCGGCCACGGAGACAATGGATGGCGAGCTGATTGGCTCCTATCTGA
CAATGGCGGACATCGATGCTGAGACCCAGGCGGAGATGGTCAAGAGACAT
ATATTATTCCAGCGCGGCGATGAGAAGCTGACCACAGCCGGCTGCTATCG
TTTCTGG
BO14867.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-PA | 1374 | CG4546-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-RA | 1773 | CG4546-RA | 247..1137 | 17..907 | 4455 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:05:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15847170..15847800 | 277..907 | 3155 | 100 | Plus |
| 3R | 32079331 | 3R | 15846854..15847105 | 25..276 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:05:45 has no hits.
BO14867.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:13 Download gff for
BO14867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:43 Download gff for
BO14867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:32 Download gff for
BO14867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 273..1163 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:52 Download gff for
BO14867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 247..1137 | 17..907 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:52 Download gff for
BO14867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15846849..15847105 | 21..276 | 99 | -> | Plus |
| 3R | 15847170..15847800 | 277..907 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:32 Download gff for
BO14867.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11672571..11672827 | 21..276 | 99 | -> | Plus |
| arm_3R | 11672892..11673522 | 277..907 | 100 | | Plus |
BO14867.complete Sequence
1405 bp (1405 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633263
> BO14867.complete
GAAGTTATCAGTCGACATGACTTCGATCGAGTCAAAACGCGTCCAATATC
GAAAGTATTTGGAACGCGCCGGAGTCATCGATGCCTTAAGCAAGGCTCTG
ATTAAGCTTTACGAAGAGCAGAATAAGCCGGAGGATGCCATTCGCTTTGT
ACGCAAGTTTATGTGCGAGAGCTGCCCGGACGATGCCCAGTACGATGTAA
TGAAGAACGACCTCGAGGAGGCCAAGACCCACATCTCGAAACTGGAGCAG
GAGCTTGAACGGCTACGCGGACAAATCAAAAAGTCACCGGAGGAGTACCA
GGAGCTCACTACTGAGGGCTACAAATCGCTCATGGATGATGAGGAGAACG
TGAGCTCACTGCTGCGCAAATACCTGACTCCGGAATTGCTGGAGGAGTAC
ATGCTGGTCACCACACCTGCGCCGGTGGATGCCTACCTATACGATTGCGC
CGTCTCCGGATTCGAGCACCACGACGCGCCCGTGGGCATTTTCGCGGCAG
ATGCTGACAGCTATGACGTGTTCAACAAACTCTTTGATCCGATCATAAAG
GACTATCATGGCCAGATGGACAACGAGAACGATGTGCTGCAGAAAGACCC
AGACTTTGGCAACGTGGACGAGATCGAGAACTTGGATCCGGAGCGCAAGT
ACATTCTGTCCGCACGAATCAGATTGGCTCGCAATATCGAAGGTCTGCCC
TTCTTCCCCAAACTGACCGAGAAGCAATTCATAGAGGTGGAGGAGAAGGT
GCGTTCGGCCACGGAGACAATGGATGGCGAGCTGATTGGCTCCTATCTGA
CAATGGCGGACATCGATGCTGAGACCCAGGCGGAGATGGTCAAGAGACAT
ATATTATTCCAGCGCGGCGATGAGAAGCTGACCACAGCCGGCTGCTATCG
TTTCTGGCCAACTGGTCGTGGTGTCTACCACAATCCCGCCGAGACCTTCT
TGATCTGGGTGAATCGCCAGGACCATGTGCACATTATGTCCATGGCACAG
TGCGGCGACTTGGGCGATGTTTACAATCGCCTTGTCAACGGTCTAACCGA
ACTGGAGAAGACGTTGGCCTTTGCCCGGCATCCGCGTTATGGAAACCTTA
CGGCTTGCCCCACCAATTTGGGCACCACCCTGCGGGCTTCGGTGCACATC
CGTCTGCCGCTACTCAGCAAGGACCCCGATCGTCTACTCGCCCTCGCCGA
GGAACAGCAGCTGCAGGTACGCGGCACCGATGGCGGCGAGCTGTCCACCG
TGGAAGATGGTGTCATGGACATATCAAATAAGAGGAAGCTTGGTTTCACC
GAGTTCGAACTGGTCAAAACTCTGCAGGATGGCGTTGTGACCCTGATTAA
CGCAGAGGAAGAGCTCGAAATATCCGGACAGGAGGGTGCAAGCTTTCTAG
ACCAT
BO14867.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:56:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-RA | 1374 | CG4546-PA | 1..1371 | 17..1387 | 6855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-RA | 1773 | CG4546-RA | 247..1617 | 17..1387 | 6855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15847170..15848280 | 277..1387 | 5555 | 100 | Plus |
| 3R | 32079331 | 3R | 15846854..15847105 | 25..276 | 1260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:56:41 has no hits.
BO14867.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:26 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 1..1374 | 17..1388 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:09 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 273..1643 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:58 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 273..1643 | 17..1389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:26 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 273..1643 | 17..1387 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:41 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4546-RA | 247..1617 | 17..1389 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:41 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15846849..15847105 | 21..276 | 99 | -> | Plus |
| 3R | 15847170..15848280 | 277..1389 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:58 Download gff for
BO14867.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11672571..11672827 | 21..276 | 99 | -> | Plus |
| arm_3R | 11672892..11674002 | 277..1389 | 99 | | Plus |
BO14867.pep Sequence
Translation from 16 to 1405
> BO14867.pep
MTSIESKRVQYRKYLERAGVIDALSKALIKLYEEQNKPEDAIRFVRKFMC
ESCPDDAQYDVMKNDLEEAKTHISKLEQELERLRGQIKKSPEEYQELTTE
GYKSLMDDEENVSSLLRKYLTPELLEEYMLVTTPAPVDAYLYDCAVSGFE
HHDAPVGIFAADADSYDVFNKLFDPIIKDYHGQMDNENDVLQKDPDFGNV
DEIENLDPERKYILSARIRLARNIEGLPFFPKLTEKQFIEVEEKVRSATE
TMDGELIGSYLTMADIDAETQAEMVKRHILFQRGDEKLTTAGCYRFWPTG
RGVYHNPAETFLIWVNRQDHVHIMSMAQCGDLGDVYNRLVNGLTELEKTL
AFARHPRYGNLTACPTNLGTTLRASVHIRLPLLSKDPDRLLALAEEQQLQ
VRGTDGGELSTVEDGVMDISNKRKLGFTEFELVKTLQDGVVTLINAEEEL
EISGQEGASFLDH
BO14867.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4546-PA | 457 | CG4546-PA | 1..457 | 1..457 | 2369 | 100 | Plus |
| Argk-PG | 356 | CG32031-PG | 12..356 | 100..450 | 806 | 46.5 | Plus |
| Argk-PH | 356 | CG32031-PH | 12..356 | 100..450 | 806 | 46.5 | Plus |
| Argk-PD | 356 | CG32031-PD | 12..356 | 100..450 | 806 | 46.5 | Plus |
| Argk-PE | 375 | CG32031-PE | 31..375 | 100..450 | 806 | 46.5 | Plus |
