Clone BO14872 Report

Search the DGRC for BO14872

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG10298-RA
Protein status:BO14872.pep: validated full length
Sequenced Size:595

Clone Sequence Records

BO14872.3prime Sequence

593 bp (593 high quality bases) assembled on 2006-06-16

> BO14872.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCAGATAGTTGCTTGTATAACTTGG
GCACATAGTCGTCCCACTGTGCCTGAAAAAAGTTTCCGGCAATGGGATCT
CCCAGCTTGTACTTGCTCATGAACTTGGAGGTGCTGAAATTGGCTCGCTT
GTCGCCGCTCGTTTTTGGGATTTTGGGCTCGTTGCAAGTGAGCTTTTGGG
GCTGTTTGAAGACCAGGAAGACGTAACGATGAAGCCCCGTGCCTTGCGGC
GGACCTGCACCCACATATTCGGTCAAAACTACGCCGTTCTCGACTTGGTT
CCCTGGAATATTGACCACCAGCCAGTGGTGCCACTCGCGGAACTTGGGCT
CCTTGCGACTGGGCGCATCCGGATCGGTCAGGAGGAGCGTGTAAAAGGCA
TTCGGATCTGCATCCCATTTCACCTTTGGCTGGCTCTGCACTTGCGTGGG
TGTCAATTCACCGCCTACATCCACCACCTGTCCACCACCATAAGTCACCG
TAAGCAAAGTGGCAGGACACGTCTTCAGGATATCCGGCACGATCTTGTGC
TTAGAGAAGCACACGGTGGAATCGGACATGTCGACTGATAACT

BO14872.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-PA 564 CG10298-RA 1..561 579..19 2805 100 Minus
CG6180-PA 774 CG6180-RA 416..455 380..341 175 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 745 CG10298-RA 69..629 579..19 2805 100 Minus
CG6180-RA 1020 CG6180-RA 513..696 393..210 275 77.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6343203..6343683 499..19 2405 100 Minus
3R 32079331 3R 6343070..6343152 579..497 415 100 Minus
2L 23513712 2L 12708173..12708356 393..210 275 76.6 Minus
Blast to na_te.dros performed on 2015-02-12 03:54:49 has no hits.

BO14872.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:18 Download gff for BO14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-PA 1..564 18..579 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:49 Download gff for BO14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-PA 1..564 18..579 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:45:07 Download gff for BO14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..629 19..588 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:48 Download gff for BO14872.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..629 19..588 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:48 Download gff for BO14872.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6343060..6343150 499..588 95 -> Minus
3R 6343204..6343683 19..498 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:45:07 Download gff for BO14872.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2168782..2168872 499..588 95 -> Minus
arm_3R 2168926..2169405 19..498 100   Minus

BO14872.5prime Sequence

593 bp (593 high quality bases) assembled on 2006-06-16

> BO14872.5prime
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGGCAAGCTTTCTAGACC

BO14872.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-PA 564 CG10298-RA 1..561 17..577 2780 99.8 Plus
CG6180-PA 774 CG6180-RA 416..455 216..255 175 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 745 CG10298-RA 69..629 17..577 2805 100 Plus
CG6180-RA 1020 CG6180-RA 513..696 203..386 275 77.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:37
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6343203..6343683 97..577 2405 100 Plus
3R 32079331 3R 6343070..6343152 17..99 415 100 Plus
2L 23513712 2L 12708173..12708356 203..386 275 76.6 Plus
Blast to na_te.dros performed on 2015-02-12 19:57:39 has no hits.

BO14872.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:19 Download gff for BO14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-PA 1..564 17..578 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:51 Download gff for BO14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-PA 1..564 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:48 Download gff for BO14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..629 8..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:40 Download gff for BO14872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..629 8..577 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:40 Download gff for BO14872.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6343060..6343150 8..97 95 -> Plus
3R 6343204..6343683 98..577 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:48 Download gff for BO14872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2168782..2168872 8..97 95 -> Plus
arm_3R 2168926..2169405 98..577 100   Plus

BO14872.complete Sequence

595 bp assembled on 2007-10-17

GenBank Submission: FJ633264

> BO14872.complete
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGGCAAGCTTTCTAGACCAT

BO14872.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 564 CG10298-PA 1..561 17..577 2805 100 Plus
CG6180-RA 774 CG6180-PA 403..586 203..386 275 76.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-RA 745 CG10298-RA 69..629 17..577 2805 100 Plus
CG6180-RA 1020 CG6180-RA 513..696 203..386 275 76.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6343203..6343683 97..577 2405 100 Plus
3R 32079331 3R 6343070..6343152 17..99 415 100 Plus
2L 23513712 2L 12708173..12708356 203..386 275 76.6 Plus
Blast to na_te.dros performed on 2014-11-27 14:49:27 has no hits.

BO14872.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:27 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 1..564 17..578 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:42 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 59..629 8..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:41 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 69..629 17..579 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:33 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 69..629 17..579 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:27 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
CG10298-RA 69..629 17..579 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:27 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6343070..6343150 17..97 100 -> Plus
3R 6343204..6343683 98..579 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:41 Download gff for BO14872.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2168792..2168872 17..97 100 -> Plus
arm_3R 2168926..2169405 98..579 99   Plus

BO14872.pep Sequence

Translation from 16 to 595

> BO14872.pep
MSDSTVCFSKHKIVPDILKTCPATLLTVTYGGGQVVDVGGELTPTQVQSQ
PKVKWDADPNAFYTLLLTDPDAPSRKEPKFREWHHWLVVNIPGNQVENGV
VLTEYVGAGPPQGTGLHRYVFLVFKQPQKLTCNEPKIPKTSGDKRANFST
SKFMSKYKLGDPIAGNFFQAQWDDYVPKLYKQLSGKKASFLDH

BO14872.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG10298-PA 187 CG10298-PA 1..187 1..187 1016 100 Plus
CG6180-PA 257 CG6180-PA 82..255 10..183 572 59.8 Plus
CG17919-PA 202 CG17919-PA 24..200 8..184 564 57.6 Plus
Pebp1-PA 176 CG18594-PA 6..171 13..179 525 58.7 Plus
a5-PA 210 CG5430-PA 34..207 12..185 448 43.7 Plus