Clone Sequence Records
BO14872.3prime Sequence
593 bp (593 high quality bases) assembled on 2006-06-16
> BO14872.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGCCAGATAGTTGCTTGTATAACTTGG
GCACATAGTCGTCCCACTGTGCCTGAAAAAAGTTTCCGGCAATGGGATCT
CCCAGCTTGTACTTGCTCATGAACTTGGAGGTGCTGAAATTGGCTCGCTT
GTCGCCGCTCGTTTTTGGGATTTTGGGCTCGTTGCAAGTGAGCTTTTGGG
GCTGTTTGAAGACCAGGAAGACGTAACGATGAAGCCCCGTGCCTTGCGGC
GGACCTGCACCCACATATTCGGTCAAAACTACGCCGTTCTCGACTTGGTT
CCCTGGAATATTGACCACCAGCCAGTGGTGCCACTCGCGGAACTTGGGCT
CCTTGCGACTGGGCGCATCCGGATCGGTCAGGAGGAGCGTGTAAAAGGCA
TTCGGATCTGCATCCCATTTCACCTTTGGCTGGCTCTGCACTTGCGTGGG
TGTCAATTCACCGCCTACATCCACCACCTGTCCACCACCATAAGTCACCG
TAAGCAAAGTGGCAGGACACGTCTTCAGGATATCCGGCACGATCTTGTGC
TTAGAGAAGCACACGGTGGAATCGGACATGTCGACTGATAACT
BO14872.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-PA | 564 | CG10298-RA | 1..561 | 579..19 | 2805 | 100 | Minus |
CG6180-PA | 774 | CG6180-RA | 416..455 | 380..341 | 175 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 03:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 745 | CG10298-RA | 69..629 | 579..19 | 2805 | 100 | Minus |
CG6180-RA | 1020 | CG6180-RA | 513..696 | 393..210 | 275 | 77.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 03:54:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6343203..6343683 | 499..19 | 2405 | 100 | Minus |
3R | 32079331 | 3R | 6343070..6343152 | 579..497 | 415 | 100 | Minus |
2L | 23513712 | 2L | 12708173..12708356 | 393..210 | 275 | 76.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 03:54:49 has no hits.
BO14872.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:18 Download gff for
BO14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-PA | 1..564 | 18..579 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:49 Download gff for
BO14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-PA | 1..564 | 18..579 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:45:07 Download gff for
BO14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..629 | 19..588 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:49:48 Download gff for
BO14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..629 | 19..588 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:49:48 Download gff for
BO14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6343060..6343150 | 499..588 | 95 | -> | Minus |
3R | 6343204..6343683 | 19..498 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:45:07 Download gff for
BO14872.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2168782..2168872 | 499..588 | 95 | -> | Minus |
arm_3R | 2168926..2169405 | 19..498 | 100 | | Minus |
BO14872.5prime Sequence
593 bp (593 high quality bases) assembled on 2006-06-16
> BO14872.5prime
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGGCAAGCTTTCTAGACC
BO14872.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-PA | 564 | CG10298-RA | 1..561 | 17..577 | 2780 | 99.8 | Plus |
CG6180-PA | 774 | CG6180-RA | 416..455 | 216..255 | 175 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 745 | CG10298-RA | 69..629 | 17..577 | 2805 | 100 | Plus |
CG6180-RA | 1020 | CG6180-RA | 513..696 | 203..386 | 275 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:57:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6343203..6343683 | 97..577 | 2405 | 100 | Plus |
3R | 32079331 | 3R | 6343070..6343152 | 17..99 | 415 | 100 | Plus |
2L | 23513712 | 2L | 12708173..12708356 | 203..386 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:57:39 has no hits.
BO14872.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:19 Download gff for
BO14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-PA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:51 Download gff for
BO14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-PA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:48 Download gff for
BO14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..629 | 8..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:40 Download gff for
BO14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..629 | 8..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:40 Download gff for
BO14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6343060..6343150 | 8..97 | 95 | -> | Plus |
3R | 6343204..6343683 | 98..577 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:48 Download gff for
BO14872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2168782..2168872 | 8..97 | 95 | -> | Plus |
arm_3R | 2168926..2169405 | 98..577 | 100 | | Plus |
BO14872.complete Sequence
595 bp assembled on 2007-10-17
GenBank Submission: FJ633264
> BO14872.complete
GAAGTTATCAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACA
AGATCGTGCCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTG
ACTTATGGTGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCAC
GCAAGTGCAGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCT
TTTACACGCTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCC
AAGTTCCGCGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCA
AGTCGAGAACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGC
AAGGCACGGGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAA
AAGCTCACTTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCG
AGCCAATTTCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATC
CCATTGCCGGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAG
TTATACAAGCAACTATCTGGCAAGAAGGCAAGCTTTCTAGACCAT
BO14872.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 564 | CG10298-PA | 1..561 | 17..577 | 2805 | 100 | Plus |
CG6180-RA | 774 | CG6180-PA | 403..586 | 203..386 | 275 | 76.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-RA | 745 | CG10298-RA | 69..629 | 17..577 | 2805 | 100 | Plus |
CG6180-RA | 1020 | CG6180-RA | 513..696 | 203..386 | 275 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6343203..6343683 | 97..577 | 2405 | 100 | Plus |
3R | 32079331 | 3R | 6343070..6343152 | 17..99 | 415 | 100 | Plus |
2L | 23513712 | 2L | 12708173..12708356 | 203..386 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:49:27 has no hits.
BO14872.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:27 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 1..564 | 17..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:42 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 59..629 | 8..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:41 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 69..629 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:45:33 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 69..629 | 17..579 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:19:27 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10298-RA | 69..629 | 17..579 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:19:27 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6343070..6343150 | 17..97 | 100 | -> | Plus |
3R | 6343204..6343683 | 98..579 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:41 Download gff for
BO14872.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2168792..2168872 | 17..97 | 100 | -> | Plus |
arm_3R | 2168926..2169405 | 98..579 | 99 | | Plus |
BO14872.pep Sequence
Translation from 16 to 595
> BO14872.pep
MSDSTVCFSKHKIVPDILKTCPATLLTVTYGGGQVVDVGGELTPTQVQSQ
PKVKWDADPNAFYTLLLTDPDAPSRKEPKFREWHHWLVVNIPGNQVENGV
VLTEYVGAGPPQGTGLHRYVFLVFKQPQKLTCNEPKIPKTSGDKRANFST
SKFMSKYKLGDPIAGNFFQAQWDDYVPKLYKQLSGKKASFLDH
BO14872.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10298-PA | 187 | CG10298-PA | 1..187 | 1..187 | 1016 | 100 | Plus |
CG6180-PA | 257 | CG6180-PA | 82..255 | 10..183 | 572 | 59.8 | Plus |
CG17919-PA | 202 | CG17919-PA | 24..200 | 8..184 | 564 | 57.6 | Plus |
Pebp1-PA | 176 | CG18594-PA | 6..171 | 13..179 | 525 | 58.7 | Plus |
a5-PA | 210 | CG5430-PA | 34..207 | 12..185 | 448 | 43.7 | Plus |