Clone Sequence Records
BO14873.complete Sequence
1648 bp assembled on 2010-03-18
GenBank Submission: KX796968
> BO14873.complete
GAAGTTATCAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGA
TCTTTCTATTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAG
GAAGTGCACAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAG
GTTCTCCACGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGG
ATCCCCAGTTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTT
CAGCTACCACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCT
CGGGGATGGTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAG
GACAACGCCAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAA
TTCCCCTATTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCC
CGACTCAGCCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACA
TTATTAATATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCC
AGCCAGGATCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAA
TGCCGGCAAGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCA
GTCCCTCTGGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGAC
ACGGATGTGACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGC
CACTCAACTGGTGACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCG
GCGGCGGAATGGGCAAGTTCCTTCCCAAAACCACGAAGGATAGTCACGGG
AAATATGGCGAGCGATCCGATGGCGTGAATCTGCTGTCCCGGTGGCAAGG
GCTCCACGATAAAGGTGTCTTGGTCACCAATCGCAAGCAGCTGCTTAACT
TAGACGTTTCAGCTGCATCCAGCATAATTGGTACCTTCCAATCGGGCTTG
ATGGACTTTCACATGGACGCTGATCCCACCTATCAGCCCACTCTCTCGGA
ACTCACCGAGGTGGCCATCAAGAAGCTCAGCCACAATGAAAATGGATACT
TTGTGTTCATAGAGGGTGGCCTCATTGACTACGGCAACCACTACACGCAG
GCGGGATACGCCTTGGATGAGGCCCTGGAGTTCGAGAAGGCCATTCAGTT
GGCTCGTGAAATGACCAACATCAGTGACACGTTGATTGTGGTGACCGCTG
ATCACGGACATGCCGTCAGCATAGCCGGATATCCTGGAAGGGGTACACCT
ATCCTTGGACTCAATCAACACGACACAGATATCAACGGAGTGAAATACTC
GGTGCTAAACTACGCAGCTGGACCCAATCAGTATCTGGATGAGCATGGCC
AGCGCATTCCTTTGGATGATATCCTTGGCCCCGATGACGCCATATCACCA
AGCTACATCGATAAAGAAATTGGAGTGCACTCCGGGGAGGACGTGGGTAT
TTGGGCTTCTGGCCCGCAGAGTCACCTTTTCACCGGAGTGATGCAGCAGA
GCACCATTCCCCACCTGATGGCCTACGCCTCATGCGTTGGTAGTGGAAAG
CAGGTCTGCGGGAGCTCAGGGCGGAAAACCGCAAGCTTTCTAGACCAT
BO14873.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:51:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3290-RA | 1617 | CG3290-PA | 1..1614 | 17..1630 | 8070 | 100 | Plus |
| CG3264-RB | 1602 | CG3264-PB | 41..1594 | 60..1610 | 3865 | 83.4 | Plus |
| CG3264-RA | 1602 | CG3264-PA | 41..1594 | 60..1610 | 3865 | 83.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:51:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3290-RA | 1762 | CG3290-RA | 19..1632 | 17..1630 | 8070 | 100 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 83..1636 | 60..1610 | 3865 | 83.4 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 83..1636 | 60..1610 | 3865 | 83.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:51:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22206717..22207409 | 1117..425 | 3465 | 100 | Minus |
| 2R | 25286936 | 2R | 22206135..22206650 | 1630..1115 | 2580 | 100 | Minus |
| 2R | 25286936 | 2R | 22207562..22207969 | 424..17 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 22209559..22210256 | 1119..425 | 1745 | 83.7 | Minus |
| 2R | 25286936 | 2R | 22209010..22209505 | 1610..1115 | 1310 | 84.3 | Minus |
| 2R | 25286936 | 2R | 22210320..22210683 | 423..60 | 845 | 82.1 | Minus |
| 2R | 25286936 | 2R | 22204593..22205002 | 828..428 | 500 | 75.4 | Minus |
| 2R | 25286936 | 2R | 22203759..22203851 | 1597..1505 | 300 | 88.2 | Minus |
| 2R | 25286936 | 2R | 22204014..22204188 | 1407..1233 | 215 | 74.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:51:56 has no hits.
BO14873.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-03-18 17:35:34 Download gff for
BO14873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 19..1632 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:36:37 Download gff for
BO14873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 19..1632 | 17..1632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:11:53 Download gff for
BO14873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 19..1632 | 17..1632 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:11:53 Download gff for
BO14873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22206132..22206649 | 1116..1632 | 99 | <- | Minus |
| 2R | 22206719..22207409 | 425..1115 | 100 | <- | Minus |
| 2R | 22207562..22207969 | 17..424 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:36:37 Download gff for
BO14873.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18093637..18094154 | 1116..1632 | 99 | <- | Minus |
| arm_2R | 18094224..18094914 | 425..1115 | 100 | <- | Minus |
| arm_2R | 18095067..18095474 | 17..424 | 100 | | Minus |
BO14873.5prime Sequence
1165 bp (905 high quality bases) assembled on 2010-02-21
> BO14873.5prime
ATGCACATCTCCCAGAGGCGCTGCCTTTATCCGATCTTTCTATTCCTGCT
GGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAGGAAGTGCACAATGTGT
TGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAGGTTCTCCACGGACGTG
GCCACGGGCAAGTACACTCCGCCGGAGGAGATGGATCCCCAGTTCTGGTA
CAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTTCAGCTACCACAGCCCA
ACTCCGACAGGGCCAAAAACGTGATAATGTTCCTCGGGGATGGTATGCCA
ATTAGCACAGTCACAGCTGCTCGCATCCTGAAAGGACAACGCCAAGGAAA
CACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAATTCCCCTATTCGGGAT
TGAGCAGAACCTACTGCGCCAACGCCCAGGTTCCCGACTCAGCCTGTACT
GCTACCGCTTATCTGTGCGGCGTTAAAACCAACATTATTAATATCGGAGT
AAGTGCAGCAGTAAACTTTAACAACTGCACCGCCAGCCAGGATCCCGCGA
ACCGCCTGACCTCCATTGCGGAATGGGCCCAGAATGCCGGCAAGTCCACG
GGATTTGTGACCACCACCACACTGACCCATGCCAGTCCCTCTGGAGCATA
TGCCAAGACGGCCAATCGAATGTGGCAAAGCGACACGGATGTGACCAGCT
ATGGAGTGGATGCCAGCACCTGCGTCGACATGGCCACTCAACTGGTGACC
CAGACGCCCGGCAAGAACTTCGAGGTCATGTTCGGCGGCGGAATGGGCAA
GTTCCTTCCCAAAACCACGAAGGATAGTCACGGGGAATATGGCGAGCGAT
CCGATGGCGTGAATCTGCTGTCCCGGTGGCANGGGCTCAACGATAAAGGT
GTCTTGGTCACCAATCGCAAGCAGCTGCCTAACTTAGACGTTTCACCTGC
ATCCAGCATAATTTGGTACCCTTTCCATCGGGCTTTGAGGGACTTTCACA
TGGAACCCTGAACCCACCCTATCAGCCCCCTCCTCCTCGAAAATCTCCCA
AGGGGGGGCCATTCAAGAAACCCCCACCCCCCAAAGGGAAAAAGGGGAAA
ATTTTTGGGGGTTTTAAAAAAGGGGGTGGGCCCTCCTTTGGCCAAACCCG
GGCCCCCCCCCCCTT
BO14873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:49:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3290-RA | 1762 | CG3290-RA | 19..1045 | 1..1032 | 4874 | 98.4 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 83..971 | 44..932 | 2319 | 84.2 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 83..971 | 44..932 | 2319 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:49:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22206817..22207409 | 1004..409 | 2714 | 98.2 | Minus |
| 2R | 25286936 | 2R | 22207562..22207969 | 408..1 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 22209733..22210256 | 932..409 | 1484 | 85.5 | Minus |
| 2R | 25286936 | 2R | 22210320..22210683 | 407..44 | 845 | 82.1 | Minus |
| 2R | 25286936 | 2R | 22204593..22205002 | 812..412 | 500 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:49:49 has no hits.
BO14873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:03:03 Download gff for
BO14873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 19..1050 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 01:01:11 Download gff for
BO14873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 19..1050 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:12:12 Download gff for
BO14873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 19..1050 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:12:12 Download gff for
BO14873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22206855..22207409 | 409..963 | 99 | <- | Minus |
| 2R | 22207562..22207969 | 1..408 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 01:01:11 Download gff for
BO14873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18094360..18094914 | 409..963 | 99 | <- | Minus |
| arm_2R | 18095067..18095474 | 1..408 | 100 | | Minus |
BO14873.pep Sequence
Translation from 16 to 1648
> BO14873.pep
MHISQRRCLYPIFLFLLAFVGTALGRVQEVHNVLELTGQKASKLRFSTDV
ATGKYTPPEEMDPQFWYKLADEEIAKRLQLPQPNSDRAKNVIMFLGDGMP
ISTVTAARILKGQRQGNTGEESSLSFEKFPYSGLSRTYCANAQVPDSACT
ATAYLCGVKTNIINIGVSAAVNFNNCTASQDPANRLTSIAEWAQNAGKST
GFVTTTTLTHASPSGAYAKTANRMWQSDTDVTSYGVDASTCVDMATQLVT
QTPGKNFEVMFGGGMGKFLPKTTKDSHGKYGERSDGVNLLSRWQGLHDKG
VLVTNRKQLLNLDVSAASSIIGTFQSGLMDFHMDADPTYQPTLSELTEVA
IKKLSHNENGYFVFIEGGLIDYGNHYTQAGYALDEALEFEKAIQLAREMT
NISDTLIVVTADHGHAVSIAGYPGRGTPILGLNQHDTDINGVKYSVLNYA
AGPNQYLDEHGQRIPLDDILGPDDAISPSYIDKEIGVHSGEDVGIWASGP
QSHLFTGVMQQSTIPHLMAYASCVGSGKQVCGSSGRKTASFLDH
BO14873.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3290-PA | 538 | CG3290-PA | 1..538 | 1..538 | 2817 | 100 | Plus |
| CG3264-PB | 533 | CG3264-PB | 1..531 | 1..531 | 2396 | 85.9 | Plus |
| CG3264-PA | 533 | CG3264-PA | 1..531 | 1..531 | 2396 | 85.9 | Plus |
| CG3292-PA | 543 | CG3292-PA | 7..539 | 12..531 | 1781 | 64 | Plus |
| CG5656-PA | 523 | CG5656-PA | 22..513 | 54..531 | 1101 | 47 | Plus |
