Clone BO14874 Report

Search the DGRC for BO14874

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG7770-RA
Protein status:BO14874.pep: Imported from assembly
Sequenced Size:409

Clone Sequence Records

BO14874.complete Sequence

409 bp assembled on 2010-04-12

GenBank Submission: KX799784

> BO14874.complete
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGGCAAGCTTT
CTAGACCAT

BO14874.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 378 CG7770-PB 1..375 17..391 1875 100 Plus
CG7770-RA 378 CG7770-PA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 847 CG7770-RB 152..526 17..391 1875 100 Plus
CG7770-RA 650 CG7770-RA 152..526 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19923982..19924208 90..316 1135 100 Plus
3L 28110227 3L 19924292..19924367 316..391 380 100 Plus
3L 28110227 3L 19923822..19923894 17..89 365 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:00:32 has no hits.

BO14874.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:34 Download gff for BO14874.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 130..504 17..393 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:55 Download gff for BO14874.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..526 17..393 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:30 Download gff for BO14874.complete
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..526 17..393 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:30 Download gff for BO14874.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19923822..19923894 17..89 100 -> Plus
3L 19923982..19924207 90..315 100 -> Plus
3L 19924292..19924367 316..393 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:55 Download gff for BO14874.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19917082..19917307 90..315 100 -> Plus
arm_3L 19917392..19917467 316..393 97   Plus
arm_3L 19916922..19916994 17..89 100 -> Plus

BO14874.3prime Sequence

407 bp (407 high quality bases) assembled on 2006-06-16

> BO14874.3prime
ATGGTCTAGAAAGCTTGCCTGCATGGCCGCCGCCACCTGACACTGCTGTT
GGTACTTGGCCACGGATTCCCGATGCTTCAGCATGTCCTTCTCCATGTTC
TCCAGTGCGTCGGTGGAGCTCTTCAGCTCCTTGGAGATGTACTCGATGCG
CTTTCCGACATTCTGGCGCGACTCCTCCAGCTCCTGTTTGACCAGAACGG
GCCCGAAGAGCTTGTAGACCTTGTTGTCGGGGCCCAGAAGATTCAGCTCG
TCCAGGACGCACTTGTTCTCGTTCAGCTGGCTTTCGAGCACTGCTCGCTG
CTTCACCATCTTCAAGCAGGATTTTTGCAGGTTCTGGTACGACTCAATCT
CGGCCTGCATCTTTTTGTACAACGCTGCGCTCTTCTTGTCCATGTCGACT
GATAACT

BO14874.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-PA 378 CG7770-RA 1..375 393..19 1875 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 847 CG7770-RB 152..526 393..19 1875 100 Minus
CG7770-RA 650 CG7770-RA 152..526 393..19 1875 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19923982..19924208 320..94 1135 100 Minus
3L 28110227 3L 19924292..19924367 94..19 380 100 Minus
3L 28110227 3L 19923822..19923894 393..321 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:27:08 has no hits.

BO14874.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:00 Download gff for BO14874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-PA 1..378 15..393 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:29:22 Download gff for BO14874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..529 15..393 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:00 Download gff for BO14874.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..529 15..393 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:00 Download gff for BO14874.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19923822..19923894 321..393 100 -> Minus
3L 19923982..19924207 95..320 100 -> Minus
3L 19924292..19924370 15..94 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:29:22 Download gff for BO14874.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19916922..19916994 321..393 100 -> Minus
arm_3L 19917082..19917307 95..320 100 -> Minus
arm_3L 19917392..19917470 15..94 97   Minus

BO14874.5prime Sequence

407 bp (407 high quality bases) assembled on 2006-06-16

> BO14874.5prime
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGGCAAGCTTT
CTAGACC

BO14874.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-PA 378 CG7770-RA 1..375 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-RB 847 CG7770-RB 152..526 17..391 1875 100 Plus
CG7770-RA 650 CG7770-RA 152..526 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19923982..19924208 90..316 1135 100 Plus
3L 28110227 3L 19924292..19924367 316..391 380 100 Plus
3L 28110227 3L 19923822..19923894 17..89 365 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:16:41 has no hits.

BO14874.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:01 Download gff for BO14874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-PA 1..378 17..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:37:26 Download gff for BO14874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..529 17..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:44 Download gff for BO14874.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7770-RA 152..529 17..395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:44 Download gff for BO14874.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19923822..19923894 17..89 100 -> Plus
3L 19923982..19924207 90..315 100 -> Plus
3L 19924292..19924370 316..395 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:37:26 Download gff for BO14874.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19916922..19916994 17..89 100 -> Plus
arm_3L 19917082..19917307 90..315 100 -> Plus
arm_3L 19917392..19917470 316..395 97   Plus

BO14874.pep Sequence

Translation from 16 to 409

> BO14874.pep
MDKKSAALYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDEL
NLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENM
EKDMLKHRESVAKYQQQCQVAAAMQASFLDH

BO14874.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG7770-PB 125 CG7770-PB 1..125 1..125 625 100 Plus
CG7770-PA 125 CG7770-PA 1..125 1..125 625 100 Plus