Clone Sequence Records
BO14874.complete Sequence
409 bp assembled on 2010-04-12
GenBank Submission: KX799784
> BO14874.complete
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGGCAAGCTTT
CTAGACCAT
BO14874.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:00:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 378 | CG7770-PB | 1..375 | 17..391 | 1875 | 100 | Plus |
CG7770-RA | 378 | CG7770-PA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 847 | CG7770-RB | 152..526 | 17..391 | 1875 | 100 | Plus |
CG7770-RA | 650 | CG7770-RA | 152..526 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19923982..19924208 | 90..316 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 19924292..19924367 | 316..391 | 380 | 100 | Plus |
3L | 28110227 | 3L | 19923822..19923894 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:00:32 has no hits.
BO14874.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:34 Download gff for
BO14874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 130..504 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:43:55 Download gff for
BO14874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..526 | 17..393 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:36:30 Download gff for
BO14874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..526 | 17..393 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:36:30 Download gff for
BO14874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19923822..19923894 | 17..89 | 100 | -> | Plus |
3L | 19923982..19924207 | 90..315 | 100 | -> | Plus |
3L | 19924292..19924367 | 316..393 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:43:55 Download gff for
BO14874.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19917082..19917307 | 90..315 | 100 | -> | Plus |
arm_3L | 19917392..19917467 | 316..393 | 97 | | Plus |
arm_3L | 19916922..19916994 | 17..89 | 100 | -> | Plus |
BO14874.3prime Sequence
407 bp (407 high quality bases) assembled on 2006-06-16
> BO14874.3prime
ATGGTCTAGAAAGCTTGCCTGCATGGCCGCCGCCACCTGACACTGCTGTT
GGTACTTGGCCACGGATTCCCGATGCTTCAGCATGTCCTTCTCCATGTTC
TCCAGTGCGTCGGTGGAGCTCTTCAGCTCCTTGGAGATGTACTCGATGCG
CTTTCCGACATTCTGGCGCGACTCCTCCAGCTCCTGTTTGACCAGAACGG
GCCCGAAGAGCTTGTAGACCTTGTTGTCGGGGCCCAGAAGATTCAGCTCG
TCCAGGACGCACTTGTTCTCGTTCAGCTGGCTTTCGAGCACTGCTCGCTG
CTTCACCATCTTCAAGCAGGATTTTTGCAGGTTCTGGTACGACTCAATCT
CGGCCTGCATCTTTTTGTACAACGCTGCGCTCTTCTTGTCCATGTCGACT
GATAACT
BO14874.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-PA | 378 | CG7770-RA | 1..375 | 393..19 | 1875 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 847 | CG7770-RB | 152..526 | 393..19 | 1875 | 100 | Minus |
CG7770-RA | 650 | CG7770-RA | 152..526 | 393..19 | 1875 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19923982..19924208 | 320..94 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 19924292..19924367 | 94..19 | 380 | 100 | Minus |
3L | 28110227 | 3L | 19923822..19923894 | 393..321 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:27:08 has no hits.
BO14874.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:00 Download gff for
BO14874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-PA | 1..378 | 15..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:29:22 Download gff for
BO14874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..529 | 15..393 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:14:00 Download gff for
BO14874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..529 | 15..393 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:14:00 Download gff for
BO14874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19923822..19923894 | 321..393 | 100 | -> | Minus |
3L | 19923982..19924207 | 95..320 | 100 | -> | Minus |
3L | 19924292..19924370 | 15..94 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:29:22 Download gff for
BO14874.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19916922..19916994 | 321..393 | 100 | -> | Minus |
arm_3L | 19917082..19917307 | 95..320 | 100 | -> | Minus |
arm_3L | 19917392..19917470 | 15..94 | 97 | | Minus |
BO14874.5prime Sequence
407 bp (407 high quality bases) assembled on 2006-06-16
> BO14874.5prime
GAAGTTATCAGTCGACATGGACAAGAAGAGCGCAGCGTTGTACAAAAAGA
TGCAGGCCGAGATTGAGTCGTACCAGAACCTGCAAAAATCCTGCTTGAAG
ATGGTGAAGCAGCGAGCAGTGCTCGAAAGCCAGCTGAACGAGAACAAGTG
CGTCCTGGACGAGCTGAATCTTCTGGGCCCCGACAACAAGGTCTACAAGC
TCTTCGGGCCCGTTCTGGTCAAACAGGAGCTGGAGGAGTCGCGCCAGAAT
GTCGGAAAGCGCATCGAGTACATCTCCAAGGAGCTGAAGAGCTCCACCGA
CGCACTGGAGAACATGGAGAAGGACATGCTGAAGCATCGGGAATCCGTGG
CCAAGTACCAACAGCAGTGTCAGGTGGCGGCGGCCATGCAGGCAAGCTTT
CTAGACC
BO14874.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-09 15:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-PA | 378 | CG7770-RA | 1..375 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:16:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-RB | 847 | CG7770-RB | 152..526 | 17..391 | 1875 | 100 | Plus |
CG7770-RA | 650 | CG7770-RA | 152..526 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:16:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19923982..19924208 | 90..316 | 1135 | 100 | Plus |
3L | 28110227 | 3L | 19924292..19924367 | 316..391 | 380 | 100 | Plus |
3L | 28110227 | 3L | 19923822..19923894 | 17..89 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:16:41 has no hits.
BO14874.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:01 Download gff for
BO14874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-PA | 1..378 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 21:37:26 Download gff for
BO14874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..529 | 17..395 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:02:44 Download gff for
BO14874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7770-RA | 152..529 | 17..395 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:02:44 Download gff for
BO14874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19923822..19923894 | 17..89 | 100 | -> | Plus |
3L | 19923982..19924207 | 90..315 | 100 | -> | Plus |
3L | 19924292..19924370 | 316..395 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 21:37:26 Download gff for
BO14874.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19916922..19916994 | 17..89 | 100 | -> | Plus |
arm_3L | 19917082..19917307 | 90..315 | 100 | -> | Plus |
arm_3L | 19917392..19917470 | 316..395 | 97 | | Plus |
BO14874.pep Sequence
Translation from 16 to 409
> BO14874.pep
MDKKSAALYKKMQAEIESYQNLQKSCLKMVKQRAVLESQLNENKCVLDEL
NLLGPDNKVYKLFGPVLVKQELEESRQNVGKRIEYISKELKSSTDALENM
EKDMLKHRESVAKYQQQCQVAAAMQASFLDH
BO14874.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7770-PB | 125 | CG7770-PB | 1..125 | 1..125 | 625 | 100 | Plus |
CG7770-PA | 125 | CG7770-PA | 1..125 | 1..125 | 625 | 100 | Plus |