Clone Sequence Records
BO14875.3prime Sequence
861 bp (809 high quality bases) assembled on 2006-06-16
> BO14875.3prime
ATGGTCTAGAAAGCTTGCGTGATAGCTTATCTTAGCGCCGCCTTGAGTTC
CCTTCGCTTTGCACAACTCTGCATAAGGCGCATCGGGAATTATGTCCTTG
GTAAGTTCCAATAACTTGCCAATGGGACACTGTTTCTCGCAGCCGGGAAT
CTGCAGCTGCTGAGGCTCCTTGTGGGGATCGTTTTGGAAGTAGATTTCCA
GGAAATACTCCCCAGTTTGCGGGTTTTGATGCAGCTCAAATGCAATCAAC
GACGAGAAGCGGGGCATCTGAGCCTCCCAAACATTCAAGGCGGATAGCAC
ATTTGTGATGGTCCAATCGTGACCGCAGGAAAGGAACATCTTGCGATTGG
CTGGCTTCAATGCTCCGGAGATCCTGTCCTGCATTTGCTTCAACAGCAGC
TCCACGAAGAAACCCCCTTTCATTTTGCGCTGCTCGGTCGTATAGGCATC
GTAGACATATGACTTTTCAGCCAAGGGTAGCATCTTCTCCGGAAAGTAGT
CATTGGTCCACGAGGGCAACTGCAGGCCGAAAGTCTGTTCACAGAGCAGG
GTGATGAACACATTGGTGACATCGTGGGCATGGGTAATATTGAGTCCGGT
GTGAGTGGTCAGTTCGCGTAGTAAATCCGAGCTCTCGGCATGCAGCTTTT
TGACCTCGGGAAGTTCTATTACCTCCAGAACAGACTCATCGTATCGGGGG
CAGGGTGCCTTCATTCTAATGTGCACATCAGTTTCCTCTGGTTCCATCAC
AATGGGTATGGGCTGCCAATTGAGCAGCTGGTTCCACTCCATGGGAGTGT
TCTCCGGTGGAAAGAGTCCGGCGAGGACCATTTGCATAGACATCAAGGTG
CGCGGTGACTC
BO14875.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-PA | 1233 | CG9451-RA | 388..1230 | 861..19 | 4215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-RB | 1592 | CG9451-RB | 466..1308 | 861..19 | 4215 | 100 | Minus |
CG9451-RA | 1387 | CG9451-RA | 466..1308 | 861..19 | 4215 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19498481..19499186 | 19..724 | 3530 | 100 | Plus |
3L | 28110227 | 3L | 19499256..19499393 | 724..861 | 690 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:10:34 has no hits.
BO14875.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:21 Download gff for
BO14875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-PA | 388..1233 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:52 Download gff for
BO14875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-PA | 388..1233 | 18..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:05:36 Download gff for
BO14875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 466..1308 | 19..861 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:08 Download gff for
BO14875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 466..1308 | 19..861 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:08 Download gff for
BO14875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19498481..19499185 | 19..723 | 100 | <- | Plus |
3L | 19499256..19499393 | 724..861 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:05:36 Download gff for
BO14875.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19492356..19492493 | 724..861 | 100 | | Plus |
arm_3L | 19491581..19492285 | 19..723 | 100 | <- | Plus |
BO14875.5prime Sequence
838 bp (775 high quality bases) assembled on 2006-06-16
> BO14875.5prime
GAAGTTATCAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGA
GCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAG
GAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAG
CCATGCGAAGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGC
TTTTTCGTCATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCG
TATATCAACGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGG
TGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATA
AAGATTTCCTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCT
TCGGAGTCACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACT
CTTTCCACCGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGC
AGCCCATACCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGA
ATGAAGGCACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGA
ACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCG
AACTGACCACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACC
AATGTGTTCATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCC
CTCGTGGACCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAA
AGTCATATGTCTACGATGCCTATACGACCGAGCAGCGC
BO14875.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-PA | 1233 | CG9451-RA | 1..822 | 17..838 | 4110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-RB | 1592 | CG9451-RB | 79..900 | 17..838 | 4110 | 100 | Plus |
CG9451-RA | 1387 | CG9451-RA | 79..900 | 17..838 | 4110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19498889..19499186 | 838..541 | 1490 | 100 | Minus |
3L | 28110227 | 3L | 19500538..19500720 | 199..17 | 915 | 100 | Minus |
3L | 28110227 | 3L | 19499256..19499414 | 541..383 | 795 | 100 | Minus |
3L | 28110227 | 3L | 19499622..19499722 | 299..199 | 505 | 100 | Minus |
3L | 28110227 | 3L | 19499474..19499558 | 383..299 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:39:48 has no hits.
BO14875.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:22 Download gff for
BO14875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:53 Download gff for
BO14875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-PA | 1..822 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:39 Download gff for
BO14875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 79..900 | 17..838 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:32 Download gff for
BO14875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 79..900 | 17..838 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:32 Download gff for
BO14875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19498889..19499185 | 542..838 | 100 | <- | Minus |
3L | 19499256..19499414 | 383..541 | 100 | <- | Minus |
3L | 19499475..19499558 | 299..382 | 100 | <- | Minus |
3L | 19499623..19499721 | 200..298 | 100 | <- | Minus |
3L | 19500538..19500720 | 17..199 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:39 Download gff for
BO14875.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19491989..19492285 | 542..838 | 100 | <- | Minus |
arm_3L | 19492356..19492514 | 383..541 | 100 | <- | Minus |
arm_3L | 19492575..19492658 | 299..382 | 100 | <- | Minus |
arm_3L | 19492723..19492821 | 200..298 | 100 | <- | Minus |
arm_3L | 19493638..19493820 | 17..199 | 100 | | Minus |
BO14875.complete Sequence
1264 bp (1264 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633265
> BO14875.complete
GAAGTTATCAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGA
GCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAG
GAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAG
CCATGCGAAGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGC
TTTTTCGTCATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCG
TATATCAACGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGG
TGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATA
AAGATTTCCTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCT
TCGGAGTCACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACT
CTTTCCACCGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGC
AGCCCATACCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGA
ATGAAGGCACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGA
ACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCG
AACTGACCACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACC
AATGTGTTCATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCC
CTCGTGGACCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAA
AGTCATATGTCTACGATGCCTATACGACCGAGCAGCGCAAAATGAAAGGG
GGTTTCTTCGTGGAGCTGCTGTTGAAGCAAATGCAGGACAGGATCTCCGG
AGCATTGAAGCCAGCCAATCGCAAGATGTTCCTTTCCTGCGGTCACGATT
GGACCATCACAAATGTGCTATCCGCCTTGAATGTTTGGGAGGCTCAGATG
CCCCGCTTCTCGTCGTTGATTGCATTTGAGCTGCATCAAAACCCGCAAAC
TGGGGAGTATTTCCTGGAAATCTACTTCCAAAACGATCCCCACAAGGAGC
CTCAGCAGCTGCAGATTCCCGGCTGCGAGAAACAGTGTCCCATTGGCAAG
TTATTGGAACTTACCAAGGACATAATTCCCGATGCGCCTTATGCAGAGTT
GTGCAAAGCGAAGGGAACTCAAGGCGGCGCTAAGATAAGCTATCACGCAA
GCTTTCTAGACCAT
BO14875.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-RB | 1233 | CG9451-PB | 1..1230 | 17..1246 | 6150 | 100 | Plus |
CG9451-RA | 1233 | CG9451-PA | 1..1230 | 17..1246 | 6150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-RB | 1592 | CG9451-RB | 79..1308 | 17..1246 | 6150 | 100 | Plus |
CG9451-RA | 1387 | CG9451-RA | 79..1308 | 17..1246 | 6150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19498481..19499186 | 1246..541 | 3530 | 100 | Minus |
3L | 28110227 | 3L | 19500538..19500720 | 199..17 | 915 | 100 | Minus |
3L | 28110227 | 3L | 19499256..19499414 | 541..383 | 795 | 100 | Minus |
3L | 28110227 | 3L | 19499622..19499722 | 299..199 | 505 | 100 | Minus |
3L | 28110227 | 3L | 19499474..19499558 | 383..299 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:49:50 has no hits.
BO14875.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:27 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 1..1233 | 17..1247 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:11 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 93..1322 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:22 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 79..1308 | 17..1248 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:27 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 93..1322 | 17..1246 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:48 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9451-RA | 79..1308 | 17..1248 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:48 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19500538..19500720 | 17..199 | 100 | | Minus |
3L | 19499256..19499414 | 383..541 | 100 | <- | Minus |
3L | 19499475..19499558 | 299..382 | 100 | <- | Minus |
3L | 19499623..19499721 | 200..298 | 100 | <- | Minus |
3L | 19498479..19499185 | 542..1248 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:22 Download gff for
BO14875.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19491579..19492285 | 542..1248 | 99 | <- | Minus |
arm_3L | 19492356..19492514 | 383..541 | 100 | <- | Minus |
arm_3L | 19492575..19492658 | 299..382 | 100 | <- | Minus |
arm_3L | 19492723..19492821 | 200..298 | 100 | <- | Minus |
arm_3L | 19493638..19493820 | 17..199 | 100 | | Minus |
BO14875.pep Sequence
Translation from 16 to 1264
> BO14875.pep
MRKFLGLLLTVSCVLIARGGVMEIEVPQEVTEGPGDVSQSSAEISHAKDS
VSNSTLKLVHVLFRHGPRTPVSTYPNDPYINETYEPFGWGALTNGAKVEL
YKIGKQLRQRYKDFLPAYYQPDAIRAQSSESPRTLMSMQMVLAGLFPPEN
TPMEWNQLLNWQPIPIVMEPEETDVHIRMKAPCPRYDESVLEVIELPEVK
KLHAESSDLLRELTTHTGLNITHAHDVTNVFITLLCEQTFGLQLPSWTND
YFPEKMLPLAEKSYVYDAYTTEQRKMKGGFFVELLLKQMQDRISGALKPA
NRKMFLSCGHDWTITNVLSALNVWEAQMPRFSSLIAFELHQNPQTGEYFL
EIYFQNDPHKEPQQLQIPGCEKQCPIGKLLELTKDIIPDAPYAELCKAKG
TQGGAKISYHASFLDH
BO14875.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9451-PB | 410 | CG9451-PB | 1..410 | 1..410 | 2177 | 100 | Plus |
CG9451-PA | 410 | CG9451-PA | 1..410 | 1..410 | 2177 | 100 | Plus |
CG9449-PK | 391 | CG9449-PK | 34..379 | 54..399 | 1038 | 52.9 | Plus |
CG9449-PH | 404 | CG9449-PH | 47..392 | 54..399 | 1038 | 52.9 | Plus |
CG9449-PG | 404 | CG9449-PG | 47..392 | 54..399 | 1038 | 52.9 | Plus |