Clone BO14875 Report

Search the DGRC for BO14875

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG9451-RA
Protein status:BO14875.pep: validated full length
Sequenced Size:1264

Clone Sequence Records

BO14875.3prime Sequence

861 bp (809 high quality bases) assembled on 2006-06-16

> BO14875.3prime
ATGGTCTAGAAAGCTTGCGTGATAGCTTATCTTAGCGCCGCCTTGAGTTC
CCTTCGCTTTGCACAACTCTGCATAAGGCGCATCGGGAATTATGTCCTTG
GTAAGTTCCAATAACTTGCCAATGGGACACTGTTTCTCGCAGCCGGGAAT
CTGCAGCTGCTGAGGCTCCTTGTGGGGATCGTTTTGGAAGTAGATTTCCA
GGAAATACTCCCCAGTTTGCGGGTTTTGATGCAGCTCAAATGCAATCAAC
GACGAGAAGCGGGGCATCTGAGCCTCCCAAACATTCAAGGCGGATAGCAC
ATTTGTGATGGTCCAATCGTGACCGCAGGAAAGGAACATCTTGCGATTGG
CTGGCTTCAATGCTCCGGAGATCCTGTCCTGCATTTGCTTCAACAGCAGC
TCCACGAAGAAACCCCCTTTCATTTTGCGCTGCTCGGTCGTATAGGCATC
GTAGACATATGACTTTTCAGCCAAGGGTAGCATCTTCTCCGGAAAGTAGT
CATTGGTCCACGAGGGCAACTGCAGGCCGAAAGTCTGTTCACAGAGCAGG
GTGATGAACACATTGGTGACATCGTGGGCATGGGTAATATTGAGTCCGGT
GTGAGTGGTCAGTTCGCGTAGTAAATCCGAGCTCTCGGCATGCAGCTTTT
TGACCTCGGGAAGTTCTATTACCTCCAGAACAGACTCATCGTATCGGGGG
CAGGGTGCCTTCATTCTAATGTGCACATCAGTTTCCTCTGGTTCCATCAC
AATGGGTATGGGCTGCCAATTGAGCAGCTGGTTCCACTCCATGGGAGTGT
TCTCCGGTGGAAAGAGTCCGGCGAGGACCATTTGCATAGACATCAAGGTG
CGCGGTGACTC

BO14875.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PA 1233 CG9451-RA 388..1230 861..19 4215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1592 CG9451-RB 466..1308 861..19 4215 100 Minus
CG9451-RA 1387 CG9451-RA 466..1308 861..19 4215 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498481..19499186 19..724 3530 100 Plus
3L 28110227 3L 19499256..19499393 724..861 690 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:10:34 has no hits.

BO14875.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:21 Download gff for BO14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-PA 388..1233 18..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:52 Download gff for BO14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-PA 388..1233 18..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:05:36 Download gff for BO14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 466..1308 19..861 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:11:08 Download gff for BO14875.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 466..1308 19..861 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:11:08 Download gff for BO14875.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19498481..19499185 19..723 100 <- Plus
3L 19499256..19499393 724..861 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:05:36 Download gff for BO14875.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19492356..19492493 724..861 100   Plus
arm_3L 19491581..19492285 19..723 100 <- Plus

BO14875.5prime Sequence

838 bp (775 high quality bases) assembled on 2006-06-16

> BO14875.5prime
GAAGTTATCAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGA
GCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAG
GAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAG
CCATGCGAAGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGC
TTTTTCGTCATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCG
TATATCAACGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGG
TGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATA
AAGATTTCCTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCT
TCGGAGTCACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACT
CTTTCCACCGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGC
AGCCCATACCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGA
ATGAAGGCACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGA
ACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCG
AACTGACCACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACC
AATGTGTTCATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCC
CTCGTGGACCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAA
AGTCATATGTCTACGATGCCTATACGACCGAGCAGCGC

BO14875.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PA 1233 CG9451-RA 1..822 17..838 4110 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1592 CG9451-RB 79..900 17..838 4110 100 Plus
CG9451-RA 1387 CG9451-RA 79..900 17..838 4110 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498889..19499186 838..541 1490 100 Minus
3L 28110227 3L 19500538..19500720 199..17 915 100 Minus
3L 28110227 3L 19499256..19499414 541..383 795 100 Minus
3L 28110227 3L 19499622..19499722 299..199 505 100 Minus
3L 28110227 3L 19499474..19499558 383..299 425 100 Minus
Blast to na_te.dros performed on 2015-02-11 09:39:48 has no hits.

BO14875.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:22 Download gff for BO14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:53 Download gff for BO14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-PA 1..822 17..838 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:39 Download gff for BO14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..900 17..838 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:32 Download gff for BO14875.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..900 17..838 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:32 Download gff for BO14875.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19498889..19499185 542..838 100 <- Minus
3L 19499256..19499414 383..541 100 <- Minus
3L 19499475..19499558 299..382 100 <- Minus
3L 19499623..19499721 200..298 100 <- Minus
3L 19500538..19500720 17..199 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:39 Download gff for BO14875.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19491989..19492285 542..838 100 <- Minus
arm_3L 19492356..19492514 383..541 100 <- Minus
arm_3L 19492575..19492658 299..382 100 <- Minus
arm_3L 19492723..19492821 200..298 100 <- Minus
arm_3L 19493638..19493820 17..199 100   Minus

BO14875.complete Sequence

1264 bp (1264 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633265

> BO14875.complete
GAAGTTATCAGTCGACATGCGAAAGTTTCTCGGTCTGCTGCTCACCGTGA
GCTGTGTTCTGATCGCCCGCGGCGGCGTCATGGAGATTGAAGTGCCGCAG
GAAGTCACGGAAGGTCCTGGGGATGTCTCTCAAAGCTCAGCGGAAATAAG
CCATGCGAAGGACAGTGTTAGCAACTCAACCCTGAAGTTGGTTCACGTGC
TTTTTCGTCATGGTCCTCGAACTCCAGTGAGCACTTATCCCAACGATCCG
TATATCAACGAAACCTACGAGCCCTTCGGTTGGGGAGCACTCACCAATGG
TGCTAAAGTGGAGCTGTATAAAATAGGCAAGCAACTGCGGCAGCGCTATA
AAGATTTCCTCCCGGCGTATTATCAGCCTGACGCGATCCGTGCCCAATCT
TCGGAGTCACCGCGCACCTTGATGTCTATGCAAATGGTCCTCGCCGGACT
CTTTCCACCGGAGAACACTCCCATGGAGTGGAACCAGCTGCTCAATTGGC
AGCCCATACCCATTGTGATGGAACCAGAGGAAACTGATGTGCACATTAGA
ATGAAGGCACCCTGCCCCCGATACGATGAGTCTGTTCTGGAGGTAATAGA
ACTTCCCGAGGTCAAAAAGCTGCATGCCGAGAGCTCGGATTTACTACGCG
AACTGACCACTCACACCGGACTCAATATTACCCATGCCCACGATGTCACC
AATGTGTTCATCACCCTGCTCTGTGAACAGACTTTCGGCCTGCAGTTGCC
CTCGTGGACCAATGACTACTTTCCGGAGAAGATGCTACCCTTGGCTGAAA
AGTCATATGTCTACGATGCCTATACGACCGAGCAGCGCAAAATGAAAGGG
GGTTTCTTCGTGGAGCTGCTGTTGAAGCAAATGCAGGACAGGATCTCCGG
AGCATTGAAGCCAGCCAATCGCAAGATGTTCCTTTCCTGCGGTCACGATT
GGACCATCACAAATGTGCTATCCGCCTTGAATGTTTGGGAGGCTCAGATG
CCCCGCTTCTCGTCGTTGATTGCATTTGAGCTGCATCAAAACCCGCAAAC
TGGGGAGTATTTCCTGGAAATCTACTTCCAAAACGATCCCCACAAGGAGC
CTCAGCAGCTGCAGATTCCCGGCTGCGAGAAACAGTGTCCCATTGGCAAG
TTATTGGAACTTACCAAGGACATAATTCCCGATGCGCCTTATGCAGAGTT
GTGCAAAGCGAAGGGAACTCAAGGCGGCGCTAAGATAAGCTATCACGCAA
GCTTTCTAGACCAT

BO14875.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1233 CG9451-PB 1..1230 17..1246 6150 100 Plus
CG9451-RA 1233 CG9451-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RB 1592 CG9451-RB 79..1308 17..1246 6150 100 Plus
CG9451-RA 1387 CG9451-RA 79..1308 17..1246 6150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498481..19499186 1246..541 3530 100 Minus
3L 28110227 3L 19500538..19500720 199..17 915 100 Minus
3L 28110227 3L 19499256..19499414 541..383 795 100 Minus
3L 28110227 3L 19499622..19499722 299..199 505 100 Minus
3L 28110227 3L 19499474..19499558 383..299 425 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:49:50 has no hits.

BO14875.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:27 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 17..1247 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:11 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 93..1322 17..1246 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:22 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..1308 17..1248 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:27 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 93..1322 17..1246 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:38:48 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 79..1308 17..1248 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:38:48 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19500538..19500720 17..199 100   Minus
3L 19499256..19499414 383..541 100 <- Minus
3L 19499475..19499558 299..382 100 <- Minus
3L 19499623..19499721 200..298 100 <- Minus
3L 19498479..19499185 542..1248 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:22 Download gff for BO14875.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19491579..19492285 542..1248 99 <- Minus
arm_3L 19492356..19492514 383..541 100 <- Minus
arm_3L 19492575..19492658 299..382 100 <- Minus
arm_3L 19492723..19492821 200..298 100 <- Minus
arm_3L 19493638..19493820 17..199 100   Minus

BO14875.pep Sequence

Translation from 16 to 1264

> BO14875.pep
MRKFLGLLLTVSCVLIARGGVMEIEVPQEVTEGPGDVSQSSAEISHAKDS
VSNSTLKLVHVLFRHGPRTPVSTYPNDPYINETYEPFGWGALTNGAKVEL
YKIGKQLRQRYKDFLPAYYQPDAIRAQSSESPRTLMSMQMVLAGLFPPEN
TPMEWNQLLNWQPIPIVMEPEETDVHIRMKAPCPRYDESVLEVIELPEVK
KLHAESSDLLRELTTHTGLNITHAHDVTNVFITLLCEQTFGLQLPSWTND
YFPEKMLPLAEKSYVYDAYTTEQRKMKGGFFVELLLKQMQDRISGALKPA
NRKMFLSCGHDWTITNVLSALNVWEAQMPRFSSLIAFELHQNPQTGEYFL
EIYFQNDPHKEPQQLQIPGCEKQCPIGKLLELTKDIIPDAPYAELCKAKG
TQGGAKISYHASFLDH

BO14875.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PB 410 CG9451-PB 1..410 1..410 2177 100 Plus
CG9451-PA 410 CG9451-PA 1..410 1..410 2177 100 Plus
CG9449-PK 391 CG9449-PK 34..379 54..399 1038 52.9 Plus
CG9449-PH 404 CG9449-PH 47..392 54..399 1038 52.9 Plus
CG9449-PG 404 CG9449-PG 47..392 54..399 1038 52.9 Plus