Clone Sequence Records
BO14879.complete Sequence
1642 bp assembled on 2010-04-12
GenBank Submission: KX796633
> BO14879.complete
GAAGTTATCAGTCGACATGCACCTGAACATTGCCCTTTGGGCATGCGGCG
CCCTTCTGGCGGTGCTCCTCGCCTGGCAGCAGCGAAAGTGCTGGCGACTC
ATCTGGCAGCTGAACGGATGGCGCGGAGTGATCCAGCAGCCGGTGCTATG
GTTACTACTCTGCATCAATCTGCATCCGAACAGCATACTGGAGAAGGTAT
CCCAATATCGGGTGCACTTCCAGCGACCGCTGGCCGTTCTCGTTGGCACC
CGAGTCCTGCTCTATATCGATGATCCCGCCGGCATGGAGTGCGTTCTCAA
TGCGCCCGAATGCCTGGACAAGACCTTTCTGCAGGATGGCTTCTTTGTTC
GACGCGGTCTGCTCCATGCCAGAGGGCAAAAATGGAAATTGCGCCGCAAG
CAACTGAATCCCGCCTTCAGTCACAATATCGTGGCCAGTTTCTTCGATGT
CTTCAATTCGGTGGGCAATCAGATGGTGGAACAGTTCCAAACGCAGACGA
ATCTTCATGGACAGGCGGTTAAGTTTACGGCTGCCGAGGATTTGCTTAGT
CGAGCTGTACTCGAGGTATCCTGTTTGACCATTATGGGCACTCCAACCAA
TTTCACCCAATTGGATGACGCGCACATTGCCCACAGTTACAAGCGACTAT
TGGAAATCTCCGCCGTTCGCGTGGTGAAGCCATGGCTACAGATTCGCCTT
TTGCATCGCCTATTGGCGCCGGAACTTTACGAGGAGTCCAAAAAGTGCGC
CAAATTGCTGGAGGATTTCGTTGGCGGCATTGTGAGAACAAAGCATCGCA
ATTGGCGGCTAAGGGACGCCGTTGGCGGTGAAAAGTCTGGAGAGGATGCA
TCTAACGGCTGGCAGAGGCGCATCTTTATCGAACAGATCTTTCAGTTGGC
CGCCAATGGAGAGATGACGCTCGAAGAGATCATGGACGAGGCACAGTCGA
TGGTACTGGTGTCCTTTGAGACGGTATCCAATAGCATAATGCTGGCCCTG
CTCTGCTTGGCCACCAACAAGGGTGATTGCCAGCGACGTTTGCTGGCGGA
GATTAGGGCACTGGTGCCGGATGTTGGCCAAGTGGGCTTGGAGCAGTTGC
AGCAGTTGCGCTATCTCGATGCCTTTGTCAGCGAATCGCTGCGCCTGTTG
GCCACCGTGCCGATGAATTTGCGTCATGTTAGTCGAGATTTTCGGCTGGC
GGGCAGGCAGCACGAAACGATTGTGCCACAAAATAGCATCGTTGTGCTGG
ACACGTTTAATATGCAACGCGACGAGCGTTGGTGGGGCGCCAACGCCAGG
CAATTCGATCCGCAGCGGTTTCTCGATCAGGAAGAGGAGCAGCTGTCCAA
GGGGCACAATGATTCGGGATCGGGTGAAAAACGAAGGCAGCGTGATCGTC
GACACTCCTACAGCTTTTTGCCCTTCTCCAATGGACTGCGATCGTGTATT
GGTCGTCGCTATGGTCTTTTTATCATGAAGGTCTTCCTGGTCAAGTTGAT
AACGAACTTTGATTTTCAGAGCGATTTTGAGCTGGAGAAGCTGCAGTTTG
TCGAAAATATATCGCTAAAGTTCAAAAACGCCGATGACATCTTGCTGACA
ATTCAGCCAAAAAAGGAGTCCACTGCAAGCTTTCTAGACCAT
BO14879.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:47:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp318a1-RA | 1611 | CG1786-PA | 1..1608 | 17..1624 | 8040 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp318a1-RA | 1885 | CG1786-RA | 183..1790 | 17..1624 | 8040 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12034411..12034903 | 961..1453 | 2465 | 100 | Plus |
| X | 23542271 | X | 12034035..12034351 | 645..961 | 1585 | 100 | Plus |
| X | 23542271 | X | 12033297..12033500 | 372..575 | 1020 | 100 | Plus |
| X | 23542271 | X | 12033042..12033234 | 183..375 | 965 | 100 | Plus |
| X | 23542271 | X | 12035015..12035188 | 1451..1624 | 870 | 100 | Plus |
| X | 23542271 | X | 12032814..12032980 | 17..183 | 835 | 100 | Plus |
| X | 23542271 | X | 12033902..12033971 | 576..645 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:47:33 has no hits.
BO14879.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:23:32 Download gff for
BO14879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp318a1-RA | 183..1790 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:34:11 Download gff for
BO14879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp318a1-RA | 183..1790 | 17..1626 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:09:43 Download gff for
BO14879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp318a1-RA | 183..1790 | 17..1626 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:09:43 Download gff for
BO14879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12032814..12032979 | 17..182 | 100 | -> | Plus |
| X | 12033042..12033233 | 183..374 | 100 | -> | Plus |
| X | 12034412..12034901 | 962..1451 | 100 | -> | Plus |
| X | 12035016..12035188 | 1452..1626 | 98 | | Plus |
| X | 12033300..12033500 | 375..575 | 100 | -> | Plus |
| X | 12033902..12033971 | 576..645 | 100 | -> | Plus |
| X | 12034036..12034351 | 646..961 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:34:11 Download gff for
BO14879.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11927333..11927533 | 375..575 | 100 | -> | Plus |
| arm_X | 11927935..11928004 | 576..645 | 100 | -> | Plus |
| arm_X | 11928069..11928384 | 646..961 | 100 | -> | Plus |
| arm_X | 11926847..11927012 | 17..182 | 100 | -> | Plus |
| arm_X | 11927075..11927266 | 183..374 | 100 | -> | Plus |
| arm_X | 11928445..11928934 | 962..1451 | 100 | -> | Plus |
| arm_X | 11929049..11929221 | 1452..1626 | 98 | | Plus |
BO14879.5prime Sequence
1170 bp (906 high quality bases) assembled on 2010-02-21
> BO14879.5prime
TTTGGGCATGCGGCGCCCTTCTGGCGGTGCTCCTCGCCTGGCAGCAGCGA
AAGTGCTGGCGACTCATCTGGCAGCTGAACGGATGGCGCGGAGTGATCCA
GCAGCCGGTGCTATGGTTACTACTCTGCATCAATCTGCATCCGAACAGCA
TACTGGAGAAGGTATCCCAATATCGGGTGCACTTCCAGCGACCGCTGGCC
GTTCTCGTTGGCACCCGAGTCCTGCTCTATATCGATGATCCCGCCGGCAT
GGAGTGCGTTCTCAATGCGCCCGAATGCCTGGACAAGACCTTTCTGCAGG
ATGGCTTCTTTGTTCGACGCGGTCTGCTCCATGCCAGAGGGCAAAAATGG
AAATTGCGCCGCAAGCAACTGAATCCCGCCTTCAGTCACAATATCGTGGC
CAGTTTCTTCGATGTCTTCAATTCGGTGGGCAATCAGATGGTGGAACAGT
TCCAAACGCAGACGAATCTTCATGGACAGGCGGTTAAGTTTACGGCTGCC
GAGGATTTGCTTAGTCGAGCTGTACTCGAGGTATCCTGTTTGACCATTAT
GGGCACTCCAACCAATTTCACCCAATTGGATGACGCGCACATTGCCCACA
GTTACAAGCGACTATTGGAAATCTCCGCCGTTCGCGTGGTGAAGCCATGG
CTACAGATTCGCCTTTTGCATCGCCTATTGGCGCCGGAACTTTACGAGGA
GTCCAAAAAGTGCGCCAAATTGCTGGAGGATTTCGTTGGCGGCATTGTGA
GAACAAAGCATCGCAATTGGCGGCTAAGGGACGCCGTTGGCGGTGAAAAG
TCTGGAGAGGATGCATCTAACGGCTGGCAGAGGCGCATCTTTATTCGACA
GATCTTTTCATTTGCCCGCCAATGGAGAGATGACGCTCGAAGAGATCATG
GACGAAGCACAGTCGAAGGTACTGGTGTTCTTTTGAAAACGGAATCCATA
ACATAATGCTGGGCCCTGCTCTGGTTGGCCCCCAAACAAGGGGGAATTGC
CCGCGAACTTTGGCTGGAGGAAAATTAGGGCCCGGGGGGCCGGAAGTTGG
GCCCAAGGGGGGCTTGGGAAAATTTTGCAAAATTTTGCCCCTTTCTCCAA
TCTCCTTTGTCCCACCAAAACCCCGGGCCCCTGTGTTGGGCCCCCCCGGC
CCCCAAAAAAATTTTTTCCC
BO14879.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 01:59:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp318a1-RA | 1885 | CG1786-RA | 202..1257 | 1..1067 | 4665 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 01:59:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12034035..12034351 | 610..927 | 1435 | 97.5 | Plus |
| X | 23542271 | X | 12033297..12033500 | 337..540 | 1020 | 100 | Plus |
| X | 23542271 | X | 12033042..12033234 | 148..340 | 965 | 100 | Plus |
| X | 23542271 | X | 12032833..12032980 | 1..148 | 740 | 100 | Plus |
| X | 23542271 | X | 12033902..12033971 | 541..610 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 01:59:37 has no hits.
BO14879.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-21 04:03:03 Download gff for
BO14879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp318a1-RA | 202..1202 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 09:00:18 Download gff for
BO14879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp318a1-RA | 202..1202 | 1..1006 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 03:57:29 Download gff for
BO14879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp318a1-RA | 202..1202 | 1..1006 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 03:57:29 Download gff for
BO14879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12032833..12032979 | 1..147 | 100 | -> | Plus |
| X | 12033042..12033233 | 148..339 | 100 | -> | Plus |
| X | 12033300..12033500 | 340..540 | 100 | -> | Plus |
| X | 12033902..12033971 | 541..610 | 100 | -> | Plus |
| X | 12034036..12034351 | 611..927 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 09:00:18 Download gff for
BO14879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11926866..11927012 | 1..147 | 100 | -> | Plus |
| arm_X | 11927075..11927266 | 148..339 | 100 | -> | Plus |
| arm_X | 11927333..11927533 | 340..540 | 100 | -> | Plus |
| arm_X | 11927935..11928004 | 541..610 | 100 | -> | Plus |
| arm_X | 11928069..11928384 | 611..927 | 97 | == | Plus |
BO14879.pep Sequence
Translation from 16 to 1642
> BO14879.pep
MHLNIALWACGALLAVLLAWQQRKCWRLIWQLNGWRGVIQQPVLWLLLCI
NLHPNSILEKVSQYRVHFQRPLAVLVGTRVLLYIDDPAGMECVLNAPECL
DKTFLQDGFFVRRGLLHARGQKWKLRRKQLNPAFSHNIVASFFDVFNSVG
NQMVEQFQTQTNLHGQAVKFTAAEDLLSRAVLEVSCLTIMGTPTNFTQLD
DAHIAHSYKRLLEISAVRVVKPWLQIRLLHRLLAPELYEESKKCAKLLED
FVGGIVRTKHRNWRLRDAVGGEKSGEDASNGWQRRIFIEQIFQLAANGEM
TLEEIMDEAQSMVLVSFETVSNSIMLALLCLATNKGDCQRRLLAEIRALV
PDVGQVGLEQLQQLRYLDAFVSESLRLLATVPMNLRHVSRDFRLAGRQHE
TIVPQNSIVVLDTFNMQRDERWWGANARQFDPQRFLDQEEEQLSKGHNDS
GSGEKRRQRDRRHSYSFLPFSNGLRSCIGRRYGLFIMKVFLVKLITNFDF
QSDFELEKLQFVENISLKFKNADDILLTIQPKKESTASFLDH
BO14879.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:36:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp318a1-PA | 536 | CG1786-PA | 1..536 | 1..536 | 2784 | 100 | Plus |
| Cyp313b1-PB | 502 | CG9716-PB | 20..493 | 20..521 | 623 | 29.2 | Plus |
| Cyp313b1-PA | 502 | CG9716-PA | 20..493 | 20..521 | 623 | 29.2 | Plus |
| Cyp313a2-PB | 493 | CG10094-PB | 7..486 | 7..525 | 505 | 28.2 | Plus |
| Cyp313a4-PA | 494 | CG6802-PA | 2..493 | 3..532 | 473 | 27.1 | Plus |
