Clone BO14882 Report

Search the DGRC for BO14882

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptCG7339-RA
Protein status:BO14882.pep: validated full length
Sequenced Size:754

Clone Sequence Records

BO14882.3prime Sequence

752 bp (752 high quality bases) assembled on 2006-06-16

> BO14882.3prime
ATGGTCTAGAAAGCTTGCTTCTTCGCATGCGCCTTCGCCATCTTCGTCAT
CGTACTCCTCGTCCTCCTCGTCGTCCTGCTCATCGTCCTTTCCCTGCTGA
TCCCACCAGGAGAGCACGCCTAGGCCGGATTCGTTAATGGCGCCAATAAT
CCTGTACGGTGTCTTCACTTCTTGGGAGGTAGCTGATGCGACTGCAGCGG
ATGTGCTAGCTCCCTGCTGAGTCTGAGCCTCAGTTTTCGGTGGTCCAATG
GGTGATGTTTCCTCGAAGATCTCCCGTGATACGCGGAACTTGATGGGCTC
GCCAACGTCCATGAAGAGATCGTGTTTGGCGCCGTCCTCGAGCGGATATT
CCCAAACCCAGGCCTGTTCGGCCTCATCGAAGCGCGAAGGATGCTGCAGG
GCGGCATGCGGAATGAGGATGTCGTCGAAGAAACCAAGTGTCACATGGAC
TCCTTCGCGGCTGCAGTTTCGAATCTTTCCGGTAATCACGGTGCCCACCA
TCGGCCGGAAGACCACGTACCGGAACAGAACCTCCGTGTGCGAGGCTCCG
TCTCCCGGCAGGATGATGGAATCCTTCAGTGAAACAATATCCTTCAGCGC
AATGCATAATCCCACGTTAAGAAGGACCTTATTGGCCAGCTTTCGGTCGA
TCTCGTCGCGCACGGCGTCCACCAACTTCAGATGGAACTGGTCCGGCGCA
ATCCTCACATTGTCCTTCAGCTCCGCCAGCACGAACATGTCGACTGATAA
CT

BO14882.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PA 723 CG7339-RA 1..720 738..19 3500 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 1628 CG7339-RB 82..805 742..19 3560 99.4 Minus
CG7339-RA 967 CG7339-RA 82..805 742..19 3560 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:17:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 629..144 2385 99.4 Minus
3L 28110227 3L 11649554..11649676 141..19 615 100 Minus
3L 28110227 3L 11648837..11648953 742..626 585 100 Minus
Blast to na_te.dros performed on 2015-02-03 06:17:15 has no hits.

BO14882.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:27 Download gff for BO14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-PA 1..723 16..738 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:01 Download gff for BO14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-PA 1..723 16..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:21:53 Download gff for BO14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 12..748 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:37:32 Download gff for BO14882.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 12..748 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:37:32 Download gff for BO14882.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 11648831..11648951 628..748 97 -> Minus
3L 11649009..11649491 145..627 99 -> Minus
3L 11649551..11649683 12..144 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:21:53 Download gff for BO14882.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11642651..11642783 12..144 96   Minus
arm_3L 11641931..11642051 628..748 97 -> Minus
arm_3L 11642109..11642591 145..627 99 -> Minus

BO14882.5prime Sequence

752 bp (719 high quality bases) assembled on 2006-06-16

> BO14882.5prime
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAAGCAAGCTTTCTAGA
CC

BO14882.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PA 723 CG7339-RA 1..720 17..736 3500 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 1628 CG7339-RB 82..805 13..736 3560 99.4 Plus
CG7339-RA 967 CG7339-RA 82..805 13..736 3560 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 126..611 2385 99.4 Plus
3L 28110227 3L 11649554..11649676 614..736 615 100 Plus
3L 28110227 3L 11648837..11648953 13..129 585 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:18:20 has no hits.

BO14882.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:27 Download gff for BO14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:02 Download gff for BO14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-PA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:47 Download gff for BO14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 7..743 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:13 Download gff for BO14882.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 76..812 7..743 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:13 Download gff for BO14882.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11648831..11648951 7..127 97 -> Plus
3L 11649009..11649491 128..610 99 -> Plus
3L 11649551..11649683 611..743 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:47 Download gff for BO14882.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11641931..11642051 7..127 97 -> Plus
arm_3L 11642109..11642591 128..610 99 -> Plus
arm_3L 11642651..11642783 611..743 96   Plus

BO14882.complete Sequence

754 bp (754 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633266

> BO14882.complete
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAAGCAAGCTTTCTAGA
CCAT

BO14882.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 723 CG7339-PB 1..720 17..736 3540 99.4 Plus
CG7339-RA 723 CG7339-PA 1..720 17..736 3540 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-RB 1628 CG7339-RB 82..805 13..736 3560 99.4 Plus
CG7339-RA 967 CG7339-RA 82..805 13..736 3560 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11649007..11649492 126..611 2385 99.4 Plus
3L 28110227 3L 11649554..11649676 614..736 615 100 Plus
3L 28110227 3L 11648837..11648953 13..129 585 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:01:55 has no hits.

BO14882.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:28 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 1..723 17..739 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:12 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 48..784 7..743 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:55 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 91..805 22..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:28 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 48..784 7..743 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:15 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
CG7339-RA 91..805 22..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:15 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11648846..11648951 22..127 100 -> Plus
3L 11649009..11649491 128..610 99 -> Plus
3L 11649551..11649676 611..738 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:55 Download gff for BO14882.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11641946..11642051 22..127 100 -> Plus
arm_3L 11642109..11642591 128..610 99 -> Plus
arm_3L 11642651..11642776 611..738 97   Plus

BO14882.pep Sequence

Translation from 16 to 754

> BO14882.pep
MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKD
IVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVT
LGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIK
FRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGA
INESGLGVLSWWDQQGKDDEQDDEEDEEYDDEDGEGACEEASFLDH

BO14882.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7339-PB 240 CG7339-PB 1..240 1..240 1252 100 Plus
CG7339-PA 240 CG7339-PA 1..240 1..240 1252 100 Plus