Clone Sequence Records
BO14882.3prime Sequence
752 bp (752 high quality bases) assembled on 2006-06-16
> BO14882.3prime
ATGGTCTAGAAAGCTTGCTTCTTCGCATGCGCCTTCGCCATCTTCGTCAT
CGTACTCCTCGTCCTCCTCGTCGTCCTGCTCATCGTCCTTTCCCTGCTGA
TCCCACCAGGAGAGCACGCCTAGGCCGGATTCGTTAATGGCGCCAATAAT
CCTGTACGGTGTCTTCACTTCTTGGGAGGTAGCTGATGCGACTGCAGCGG
ATGTGCTAGCTCCCTGCTGAGTCTGAGCCTCAGTTTTCGGTGGTCCAATG
GGTGATGTTTCCTCGAAGATCTCCCGTGATACGCGGAACTTGATGGGCTC
GCCAACGTCCATGAAGAGATCGTGTTTGGCGCCGTCCTCGAGCGGATATT
CCCAAACCCAGGCCTGTTCGGCCTCATCGAAGCGCGAAGGATGCTGCAGG
GCGGCATGCGGAATGAGGATGTCGTCGAAGAAACCAAGTGTCACATGGAC
TCCTTCGCGGCTGCAGTTTCGAATCTTTCCGGTAATCACGGTGCCCACCA
TCGGCCGGAAGACCACGTACCGGAACAGAACCTCCGTGTGCGAGGCTCCG
TCTCCCGGCAGGATGATGGAATCCTTCAGTGAAACAATATCCTTCAGCGC
AATGCATAATCCCACGTTAAGAAGGACCTTATTGGCCAGCTTTCGGTCGA
TCTCGTCGCGCACGGCGTCCACCAACTTCAGATGGAACTGGTCCGGCGCA
ATCCTCACATTGTCCTTCAGCTCCGCCAGCACGAACATGTCGACTGATAA
CT
BO14882.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-PA | 723 | CG7339-RA | 1..720 | 738..19 | 3500 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 06:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 1628 | CG7339-RB | 82..805 | 742..19 | 3560 | 99.4 | Minus |
CG7339-RA | 967 | CG7339-RA | 82..805 | 742..19 | 3560 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 06:17:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11649007..11649492 | 629..144 | 2385 | 99.4 | Minus |
3L | 28110227 | 3L | 11649554..11649676 | 141..19 | 615 | 100 | Minus |
3L | 28110227 | 3L | 11648837..11648953 | 742..626 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 06:17:15 has no hits.
BO14882.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:27 Download gff for
BO14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:01 Download gff for
BO14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:21:53 Download gff for
BO14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 12..748 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:37:32 Download gff for
BO14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 12..748 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:37:32 Download gff for
BO14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11648831..11648951 | 628..748 | 97 | -> | Minus |
3L | 11649009..11649491 | 145..627 | 99 | -> | Minus |
3L | 11649551..11649683 | 12..144 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:21:53 Download gff for
BO14882.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11642651..11642783 | 12..144 | 96 | | Minus |
arm_3L | 11641931..11642051 | 628..748 | 97 | -> | Minus |
arm_3L | 11642109..11642591 | 145..627 | 99 | -> | Minus |
BO14882.5prime Sequence
752 bp (719 high quality bases) assembled on 2006-06-16
> BO14882.5prime
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAAGCAAGCTTTCTAGA
CC
BO14882.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-PA | 723 | CG7339-RA | 1..720 | 17..736 | 3500 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 1628 | CG7339-RB | 82..805 | 13..736 | 3560 | 99.4 | Plus |
CG7339-RA | 967 | CG7339-RA | 82..805 | 13..736 | 3560 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:18:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11649007..11649492 | 126..611 | 2385 | 99.4 | Plus |
3L | 28110227 | 3L | 11649554..11649676 | 614..736 | 615 | 100 | Plus |
3L | 28110227 | 3L | 11648837..11648953 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:18:20 has no hits.
BO14882.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:27 Download gff for
BO14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:02 Download gff for
BO14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:47 Download gff for
BO14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 7..743 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:45:13 Download gff for
BO14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 76..812 | 7..743 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:45:13 Download gff for
BO14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11648831..11648951 | 7..127 | 97 | -> | Plus |
3L | 11649009..11649491 | 128..610 | 99 | -> | Plus |
3L | 11649551..11649683 | 611..743 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:47 Download gff for
BO14882.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11641931..11642051 | 7..127 | 97 | -> | Plus |
arm_3L | 11642109..11642591 | 128..610 | 99 | -> | Plus |
arm_3L | 11642651..11642783 | 611..743 | 96 | | Plus |
BO14882.complete Sequence
754 bp (754 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633266
> BO14882.complete
GAAGTTATCAGTCGACATGTTCGTGCTGGCGGAGCTGAAGGACAATGTGA
GGATTGCGCCGGACCAGTTCCATCTGAAGTTGGTGGACGCCGTGCGCGAC
GAGATCGACCGAAAGCTGGCCAATAAGGTCCTTCTTAACGTGGGATTATG
CATTGCGCTGAAGGATATTGTTTCACTGAAGGATTCCATCATCCTGCCGG
GAGACGGAGCCTCGCACACGGAGGTTCTGTTCCGGTACGTGGTCTTCCGG
CCGATGGTGGGCACCGTGATTACCGGAAAGATTCGAAACTGCAGCCGCGA
AGGAGTCCATGTGACACTTGGTTTCTTCGACGACATCCTCATTCCGCATG
CCGCCCTGCAGCATCCTTCGCGCTTCGATGAGGCCGAACAGGCCTGGGTT
TGGGAATATCCGCTCGAGGACGGCGCCAAACACGATCTCTTCATGGACGT
TGGCGAGCCCATCAAGTTCCGCGTATCACGGGAGATCTTCGAGGAAACAT
CACCCATTGGACCACCGAAAACTGAGGCTCAGACTCAGCAGGGAGCTAGC
ACATCCGCTGCAGTCGCATCAGCTACCTCCCAAGAAGTGAAGACACCGTA
CAGGATTATTGGCGCCATTAACGAATCCGGCCTAGGCGTGCTCTCCTGGT
GGGATCAGCAGGGAAAGGACGATGAGCAGGACGACGAGGAGGACGAGGAG
TACGATGACGAAGATGGCGAAGGCGCATGCGAAGAAGCAAGCTTTCTAGA
CCAT
BO14882.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 723 | CG7339-PB | 1..720 | 17..736 | 3540 | 99.4 | Plus |
CG7339-RA | 723 | CG7339-PA | 1..720 | 17..736 | 3540 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-RB | 1628 | CG7339-RB | 82..805 | 13..736 | 3560 | 99.4 | Plus |
CG7339-RA | 967 | CG7339-RA | 82..805 | 13..736 | 3560 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 11649007..11649492 | 126..611 | 2385 | 99.4 | Plus |
3L | 28110227 | 3L | 11649554..11649676 | 614..736 | 615 | 100 | Plus |
3L | 28110227 | 3L | 11648837..11648953 | 13..129 | 585 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:55 has no hits.
BO14882.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:28 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:12 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 48..784 | 7..743 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:55 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 91..805 | 22..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:28 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 48..784 | 7..743 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:15 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7339-RA | 91..805 | 22..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:15 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 11648846..11648951 | 22..127 | 100 | -> | Plus |
3L | 11649009..11649491 | 128..610 | 99 | -> | Plus |
3L | 11649551..11649676 | 611..738 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:55 Download gff for
BO14882.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 11641946..11642051 | 22..127 | 100 | -> | Plus |
arm_3L | 11642109..11642591 | 128..610 | 99 | -> | Plus |
arm_3L | 11642651..11642776 | 611..738 | 97 | | Plus |
BO14882.pep Sequence
Translation from 16 to 754
> BO14882.pep
MFVLAELKDNVRIAPDQFHLKLVDAVRDEIDRKLANKVLLNVGLCIALKD
IVSLKDSIILPGDGASHTEVLFRYVVFRPMVGTVITGKIRNCSREGVHVT
LGFFDDILIPHAALQHPSRFDEAEQAWVWEYPLEDGAKHDLFMDVGEPIK
FRVSREIFEETSPIGPPKTEAQTQQGASTSAAVASATSQEVKTPYRIIGA
INESGLGVLSWWDQQGKDDEQDDEEDEEYDDEDGEGACEEASFLDH
BO14882.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7339-PB | 240 | CG7339-PB | 1..240 | 1..240 | 1252 | 100 | Plus |
CG7339-PA | 240 | CG7339-PA | 1..240 | 1..240 | 1252 | 100 | Plus |