Clone BO14885 Report

Search the DGRC for BO14885

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptCG2200-RA
Protein status:BO14885.pep: validated full length
Sequenced Size:754

Clone Sequence Records

BO14885.3prime Sequence

752 bp (752 high quality bases) assembled on 2006-06-16

> BO14885.3prime
ATGGTCTAGAAAGCTTGCTTTCTGCAGCAGGAAGGTGAGATCCGCTAGGG
GTGCTAGCTCCTCGGTGCCACCGTCAGCCTTGAACAGCTTGGCATTGCGA
TCGCCCAGGAGGATGGCCTTCTCGCCCTGAACCCGGACACTGGTGCCCTC
GCGAAGACCCAGCACGGGCAGTCCATGGTATGCGACGAACTCCTCCAGCC
GCTCGTCTCGCGTCTCGCCCTTGTGCCGACTACCCGCCTCCGGATCCAGA
TAGTGCGGATTGATGTTGAAGGGAACGAGGGCGAGTGCCTCAAAGCTCGG
CGGATAGGCCACCGGCATGTCGTTGGTGGTGTGAATGGATCGAGTTGCCA
CATTTGTGCCCGCACTGCTGCCCACGTAAGGCAATCCACGCTGGAGCACC
AGTTCCCTAATCGGATCGAGCAACTTCATCTCGTAGAGCGAACGCAGCAG
CACAAAGGTGTTGCCGCCGCCCACAAAGATGGCCTGTGCCTCCCGCAATG
CCTGCTCGCGATCCGGCTTCGTGTGCAGTCCCTCCACATTGAATCCCCAC
GGCTGCAGTGCATCGCGCACGGTGGCAGTGTACTTGTCGTGATCCCGCAG
AGCGTAGGGCACAAAGAGCACGGTCTTCACATTGGCACTCTTGAAGAGAT
CCTCCAGCTGGCCGCGCGCATGCTCCAAGTATCCATGGCCGTGCAAACGC
GACGAGGATAGCAACAATAGGTTCCGTGCACTGGCCATGTCGACTGATAA
CT

BO14885.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-PA 723 CG2200-RA 1..720 738..19 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 1224 CG2200-RB 275..994 738..19 3600 100 Minus
CG2200-RA 1055 CG2200-RA 106..825 738..19 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13094771..13095333 639..77 2815 100 Minus
X 23542271 X 13094573..13094673 738..638 505 100 Minus
X 23542271 X 13095445..13095502 76..19 290 100 Minus
Blast to na_te.dros performed on 2015-02-12 11:13:01 has no hits.

BO14885.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:08 Download gff for BO14885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-PA 1..723 15..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:54 Download gff for BO14885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..828 15..741 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:54 Download gff for BO14885.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..828 15..741 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:54 Download gff for BO14885.3prime
Subject Subject Range Query Range Percent Splice Strand
X 13094570..13094673 638..741 99 -> Minus
X 13094773..13095333 77..637 100 -> Minus
X 13095445..13095505 15..76 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:54 Download gff for BO14885.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12988603..12988706 638..741 99 -> Minus
arm_X 12988806..12989366 77..637 100 -> Minus
arm_X 12989478..12989538 15..76 96   Minus

BO14885.5prime Sequence

752 bp (752 high quality bases) assembled on 2006-06-16

> BO14885.5prime
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGG
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAAGCAAGCTTTCTAGA
CC

BO14885.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-PA 723 CG2200-RA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 1224 CG2200-RB 275..994 17..736 3600 100 Plus
CG2200-RA 1055 CG2200-RA 106..825 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13094771..13095333 116..678 2815 100 Plus
X 23542271 X 13094573..13094673 17..117 505 100 Plus
X 23542271 X 13095445..13095502 679..736 290 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:06:28 has no hits.

BO14885.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:32 Download gff for BO14885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-PA 1..723 17..740 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:09 Download gff for BO14885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-PA 1..723 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:53 Download gff for BO14885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..828 14..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:18 Download gff for BO14885.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 103..828 14..740 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:18 Download gff for BO14885.5prime
Subject Subject Range Query Range Percent Splice Strand
X 13095445..13095505 679..740 96   Plus
X 13094570..13094673 14..117 99 -> Plus
X 13094773..13095333 118..678 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:53 Download gff for BO14885.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 12988603..12988706 14..117 99 -> Plus
arm_X 12988806..12989366 118..678 100 -> Plus
arm_X 12989478..12989538 679..740 96   Plus

BO14885.complete Sequence

754 bp (754 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633268

> BO14885.complete
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGG
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAAGCAAGCTTTCTAGA
CCAT

BO14885.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 723 CG2200-PB 1..720 17..736 3600 100 Plus
CG2200-RA 723 CG2200-PA 1..720 17..736 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-RB 1224 CG2200-RB 275..994 17..736 3600 100 Plus
CG2200-RA 1055 CG2200-RA 106..825 17..736 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 13094771..13095333 116..678 2815 100 Plus
X 23542271 X 13094573..13094673 17..117 505 100 Plus
X 23542271 X 13095445..13095502 679..736 290 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:17:21 has no hits.

BO14885.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:35 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 1..723 17..740 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:51 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 57..782 14..740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:35 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 106..825 17..738 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:36 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 57..782 14..740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:17 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
CG2200-RA 106..825 17..738 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:17 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
X 13094573..13094673 17..117 100 -> Plus
X 13094773..13095333 118..678 100 -> Plus
X 13095445..13095502 679..738 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:35 Download gff for BO14885.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12988606..12988706 17..117 100 -> Plus
arm_X 12988806..12989366 118..678 100 -> Plus
arm_X 12989478..12989535 679..738 96   Plus

BO14885.pep Sequence

Translation from 16 to 754

> BO14885.pep
MASARNLLLLSSSRLHGHGYLEHARGQLEDLFKSANVKTVLFVPYALRDH
DKYTATVRDALQPWGFNVEGLHTKPDREQALREAQAIFVGGGNTFVLLRS
LYEMKLLDPIRELVLQRGLPYVGSSAGTNVATRSIHTTNDMPVAYPPSFE
ALALVPFNINPHYLDPEAGSRHKGETRDERLEEFVAYHGLPVLGLREGTS
VRVQGEKAILLGDRNAKLFKADGGTEELAPLADLTFLLQKASFLDH

BO14885.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2200-PB 240 CG2200-PB 1..240 1..240 1235 100 Plus
CG2200-PA 240 CG2200-PA 1..240 1..240 1235 100 Plus