Clone Sequence Records
BO14885.3prime Sequence
752 bp (752 high quality bases) assembled on 2006-06-16
> BO14885.3prime
ATGGTCTAGAAAGCTTGCTTTCTGCAGCAGGAAGGTGAGATCCGCTAGGG
GTGCTAGCTCCTCGGTGCCACCGTCAGCCTTGAACAGCTTGGCATTGCGA
TCGCCCAGGAGGATGGCCTTCTCGCCCTGAACCCGGACACTGGTGCCCTC
GCGAAGACCCAGCACGGGCAGTCCATGGTATGCGACGAACTCCTCCAGCC
GCTCGTCTCGCGTCTCGCCCTTGTGCCGACTACCCGCCTCCGGATCCAGA
TAGTGCGGATTGATGTTGAAGGGAACGAGGGCGAGTGCCTCAAAGCTCGG
CGGATAGGCCACCGGCATGTCGTTGGTGGTGTGAATGGATCGAGTTGCCA
CATTTGTGCCCGCACTGCTGCCCACGTAAGGCAATCCACGCTGGAGCACC
AGTTCCCTAATCGGATCGAGCAACTTCATCTCGTAGAGCGAACGCAGCAG
CACAAAGGTGTTGCCGCCGCCCACAAAGATGGCCTGTGCCTCCCGCAATG
CCTGCTCGCGATCCGGCTTCGTGTGCAGTCCCTCCACATTGAATCCCCAC
GGCTGCAGTGCATCGCGCACGGTGGCAGTGTACTTGTCGTGATCCCGCAG
AGCGTAGGGCACAAAGAGCACGGTCTTCACATTGGCACTCTTGAAGAGAT
CCTCCAGCTGGCCGCGCGCATGCTCCAAGTATCCATGGCCGTGCAAACGC
GACGAGGATAGCAACAATAGGTTCCGTGCACTGGCCATGTCGACTGATAA
CT
BO14885.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 11:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-PA | 723 | CG2200-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:13:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 1224 | CG2200-RB | 275..994 | 738..19 | 3600 | 100 | Minus |
CG2200-RA | 1055 | CG2200-RA | 106..825 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:12:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13094771..13095333 | 639..77 | 2815 | 100 | Minus |
X | 23542271 | X | 13094573..13094673 | 738..638 | 505 | 100 | Minus |
X | 23542271 | X | 13095445..13095502 | 76..19 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:13:01 has no hits.
BO14885.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:42:08 Download gff for
BO14885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-PA | 1..723 | 15..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 00:45:54 Download gff for
BO14885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..828 | 15..741 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:35:54 Download gff for
BO14885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..828 | 15..741 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:35:54 Download gff for
BO14885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13094570..13094673 | 638..741 | 99 | -> | Minus |
X | 13094773..13095333 | 77..637 | 100 | -> | Minus |
X | 13095445..13095505 | 15..76 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 00:45:54 Download gff for
BO14885.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12988603..12988706 | 638..741 | 99 | -> | Minus |
arm_X | 12988806..12989366 | 77..637 | 100 | -> | Minus |
arm_X | 12989478..12989538 | 15..76 | 96 | | Minus |
BO14885.5prime Sequence
752 bp (752 high quality bases) assembled on 2006-06-16
> BO14885.5prime
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGG
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAAGCAAGCTTTCTAGA
CC
BO14885.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-PA | 723 | CG2200-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:06:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 1224 | CG2200-RB | 275..994 | 17..736 | 3600 | 100 | Plus |
CG2200-RA | 1055 | CG2200-RA | 106..825 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13094771..13095333 | 116..678 | 2815 | 100 | Plus |
X | 23542271 | X | 13094573..13094673 | 17..117 | 505 | 100 | Plus |
X | 23542271 | X | 13095445..13095502 | 679..736 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:06:28 has no hits.
BO14885.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:32 Download gff for
BO14885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-PA | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:09 Download gff for
BO14885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-PA | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 13:58:53 Download gff for
BO14885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..828 | 14..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:47:18 Download gff for
BO14885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 103..828 | 14..740 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:47:18 Download gff for
BO14885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13095445..13095505 | 679..740 | 96 | | Plus |
X | 13094570..13094673 | 14..117 | 99 | -> | Plus |
X | 13094773..13095333 | 118..678 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 13:58:53 Download gff for
BO14885.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12988603..12988706 | 14..117 | 99 | -> | Plus |
arm_X | 12988806..12989366 | 118..678 | 100 | -> | Plus |
arm_X | 12989478..12989538 | 679..740 | 96 | | Plus |
BO14885.complete Sequence
754 bp (754 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633268
> BO14885.complete
GAAGTTATCAGTCGACATGGCCAGTGCACGGAACCTATTGTTGCTATCCT
CGTCGCGTTTGCACGGCCATGGATACTTGGAGCATGCGCGCGGCCAGCTG
GAGGATCTCTTCAAGAGTGCCAATGTGAAGACCGTGCTCTTTGTGCCCTA
CGCTCTGCGGGATCACGACAAGTACACTGCCACCGTGCGCGATGCACTGC
AGCCGTGGGGATTCAATGTGGAGGGACTGCACACGAAGCCGGATCGCGAG
CAGGCATTGCGGGAGGCACAGGCCATCTTTGTGGGCGGCGGCAACACCTT
TGTGCTGCTGCGTTCGCTCTACGAGATGAAGTTGCTCGATCCGATTAGGG
AACTGGTGCTCCAGCGTGGATTGCCTTACGTGGGCAGCAGTGCGGGCACA
AATGTGGCAACTCGATCCATTCACACCACCAACGACATGCCGGTGGCCTA
TCCGCCGAGCTTTGAGGCACTCGCCCTCGTTCCCTTCAACATCAATCCGC
ACTATCTGGATCCGGAGGCGGGTAGTCGGCACAAGGGCGAGACGCGAGAC
GAGCGGCTGGAGGAGTTCGTCGCATACCATGGACTGCCCGTGCTGGGTCT
TCGCGAGGGCACCAGTGTCCGGGTTCAGGGCGAGAAGGCCATCCTCCTGG
GCGATCGCAATGCCAAGCTGTTCAAGGCTGACGGTGGCACCGAGGAGCTA
GCACCCCTAGCGGATCTCACCTTCCTGCTGCAGAAAGCAAGCTTTCTAGA
CCAT
BO14885.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 723 | CG2200-PB | 1..720 | 17..736 | 3600 | 100 | Plus |
CG2200-RA | 723 | CG2200-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-RB | 1224 | CG2200-RB | 275..994 | 17..736 | 3600 | 100 | Plus |
CG2200-RA | 1055 | CG2200-RA | 106..825 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 13094771..13095333 | 116..678 | 2815 | 100 | Plus |
X | 23542271 | X | 13094573..13094673 | 17..117 | 505 | 100 | Plus |
X | 23542271 | X | 13095445..13095502 | 679..736 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:17:21 has no hits.
BO14885.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:35 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 1..723 | 17..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:51 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 57..782 | 14..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:49:35 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 106..825 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:36 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 57..782 | 14..740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:17 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2200-RA | 106..825 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:17 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 13094573..13094673 | 17..117 | 100 | -> | Plus |
X | 13094773..13095333 | 118..678 | 100 | -> | Plus |
X | 13095445..13095502 | 679..738 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:49:35 Download gff for
BO14885.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12988606..12988706 | 17..117 | 100 | -> | Plus |
arm_X | 12988806..12989366 | 118..678 | 100 | -> | Plus |
arm_X | 12989478..12989535 | 679..738 | 96 | | Plus |
BO14885.pep Sequence
Translation from 16 to 754
> BO14885.pep
MASARNLLLLSSSRLHGHGYLEHARGQLEDLFKSANVKTVLFVPYALRDH
DKYTATVRDALQPWGFNVEGLHTKPDREQALREAQAIFVGGGNTFVLLRS
LYEMKLLDPIRELVLQRGLPYVGSSAGTNVATRSIHTTNDMPVAYPPSFE
ALALVPFNINPHYLDPEAGSRHKGETRDERLEEFVAYHGLPVLGLREGTS
VRVQGEKAILLGDRNAKLFKADGGTEELAPLADLTFLLQKASFLDH
BO14885.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2200-PB | 240 | CG2200-PB | 1..240 | 1..240 | 1235 | 100 | Plus |
CG2200-PA | 240 | CG2200-PA | 1..240 | 1..240 | 1235 | 100 | Plus |