Clone BO14896 Report

Search the DGRC for BO14896

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:148
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG6672-RA
Protein status:BO14896.pep: validated full length
Sequenced Size:1132

Clone Sequence Records

BO14896.3prime Sequence

689 bp (643 high quality bases) assembled on 2006-05-29

> BO14896.3prime
ATGGTCTAGAAAGCTTGCAACATAATCCAACTGTATGTAGATCTGCTTGA
CGCCCACCGCCTCAAAGATCATCCGTGTGTGCGTCACCACGTACTTGGGA
TCGACGTTCTTGGACACCTCCAGCTTGAGTGCGCCCACATAGACATCGGA
GCAAAGGGTCCAGAAGTGCGGCTCCTGCACAGCGTAAACGCCAGCCAGGC
CGGTGACTTTCTGATAGCACTGCGGCAGCGATCGGTCCAGGTCGGCGGGT
TGTCGCTGCATCAGGATCATGATCGACTCCTTGATCAGACTCAGCACACT
GAGCGCTATCAGCAAGGCTATGAAGATGGAGCAAATGGGGTCCGCTATCA
TCCAGCCGAACATGTGCATCAGCACCGCCGAGATGATCACGCCCACCGAA
CCCAAAGTGTCCGCCAGGATGTGCAGGAAGACGCCGCGCATGATCTGCGA
GTTGCTGCCCGACATGTCGCCGTGCGAGTGGCCATGGCTGTCGTGATCGT
GTGAGTGTCCATGGCCATTGTCCAAGGTGATGGCTTGGTGATTGTGATTG
CCGGCGTCCGTGTGGCCGTGCGAGTGCCCGTGCCCATGACCACCACCGTG
GGAGTGTCCGTGTCCACCGTGCGAGTGTCCATGTCCGCCGTGATTGAAGG
CATAGATGCCCACCAGGTTCACCAGCAGTCCCAGCACGG

BO14896.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6672-PA 1101 CG6672-RA 428..1098 689..19 3355 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:12
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 2003 CG6672-RA 770..1440 689..19 3355 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11212871..11213368 19..516 2490 100 Plus
3R 32079331 3R 11213456..11213630 515..689 875 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:47:11 has no hits.

BO14896.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:39 Download gff for BO14896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-PA 428..1101 16..689 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:19 Download gff for BO14896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-PA 428..1101 16..689 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:52:43 Download gff for BO14896.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 770..1446 13..689 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:10 Download gff for BO14896.3prime
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 770..1446 13..689 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:10 Download gff for BO14896.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11212865..11213367 13..515 99 <- Plus
3R 11213457..11213630 516..689 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:52:43 Download gff for BO14896.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7038587..7039089 13..515 99 <- Plus
arm_3R 7039179..7039352 516..689 100   Plus

BO14896.5prime Sequence

817 bp (682 high quality bases) assembled on 2006-06-16

> BO14896.5prime
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGAAAGCGGACCCCATTT
GCTCCCTCTTCATAGCC

BO14896.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG6672-PA 1101 CG6672-RA 1..801 17..817 3955 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 2003 CG6672-RA 343..1143 17..817 3975 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11213456..11213877 618..197 2110 100 Minus
3R 32079331 3R 11213168..11213368 817..617 975 99 Minus
3R 32079331 3R 11213947..11214128 198..17 910 100 Minus
Blast to na_te.dros performed on 2015-02-09 11:02:51 has no hits.

BO14896.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:40 Download gff for BO14896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:21 Download gff for BO14896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-PA 1..801 17..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:34 Download gff for BO14896.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 343..1143 17..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:48 Download gff for BO14896.5prime
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 343..1143 17..817 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:48 Download gff for BO14896.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11213168..11213367 618..817 99 <- Minus
3R 11213457..11213876 198..617 100 <- Minus
3R 11213948..11214128 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:34 Download gff for BO14896.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7038890..7039089 618..817 99 <- Minus
arm_3R 7039179..7039598 198..617 100 <- Minus
arm_3R 7039670..7039850 17..197 100   Minus

BO14896.complete Sequence

1132 bp (1132 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633269

> BO14896.complete
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCATTT
GCTCCATCTTCATAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTGATC
AAGGAGTCGATCATGATCCTGATGCAGCGACAACCCGCCGACCTGGACCG
ATCGCTGCCGCAGTGCTATCAGAAAGTCACCGGCCTGGCTGGCGTTTACG
CTGTGCAGGAGCCGCACTTCTGGACCCTTTGCTCCGATGTCTATGTGGGC
GCACTCAAGCTGGAGGTGTCCAAGAACGTCGATCCCAAGTACGTGGTGAC
GCACACACGGATGATCTTTGAGGCGGTGGGCGTCAAGCAGATCTACATAC
AGTTGGATTATGTTGCAAGCTTTCTAGACCAT

BO14896.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 1101 CG6672-PA 1..1098 17..1114 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-RA 2003 CG6672-RA 343..1440 17..1114 5490 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11212871..11213368 1114..617 2490 100 Minus
3R 32079331 3R 11213456..11213877 618..197 2110 100 Minus
3R 32079331 3R 11213947..11214128 198..17 910 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:54:39 has no hits.

BO14896.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:16 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 1..1101 17..1117 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:55 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 321..1424 17..1120 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:53 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 343..1440 17..1116 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:17 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
CG6672-RA 321..1424 17..1120 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:32 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
ZnT86D-RA 343..1440 17..1116 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:32 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11212868..11213367 618..1116 99 <- Minus
3R 11213457..11213876 198..617 100 <- Minus
3R 11213948..11214128 17..197 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:53 Download gff for BO14896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7038590..7039089 618..1116 99 <- Minus
arm_3R 7039179..7039598 198..617 100 <- Minus
arm_3R 7039670..7039850 17..197 100   Minus

BO14896.pep Sequence

Translation from 16 to 1132

> BO14896.pep
MIPLSHKDRSSLGYRIREKLNSWKRLIFSDRNSRNLFLFLLLNLSFAFVE
LFYGIVTNSLGLISDSFHMFFDCTGLLAGLAASVITKWKANDKFSYGYVR
AEVLAGFVNSLFLLFIAFFILSEGVERLIEPPEVKHERLFVVSVLGLLVN
LVGIYAFNHGGHGHSHGGHGHSHGGGHGHGHSHGHTDAGNHNHQAITLDN
GHGHSHDHDSHGHSHGDMSGSNSQIMRGVFLHILADTLGSVGVIISAVLM
HMFGWMIADPICSIFIALLIALSVLSLIKESIMILMQRQPADLDRSLPQC
YQKVTGLAGVYAVQEPHFWTLCSDVYVGALKLEVSKNVDPKYVVTHTRMI
FEAVGVKQIYIQLDYVASFLDH

BO14896.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
ZnT86D-PA 366 CG6672-PA 1..366 1..366 1926 100 Plus
ZnT63C-PG 449 CG17723-PG 11..338 36..365 434 34.7 Plus
ZnT63C-PE 449 CG17723-PE 11..338 36..365 434 34.7 Plus
ZnT63C-PD 449 CG17723-PD 11..338 36..365 434 34.7 Plus
ZnT63C-PC 449 CG17723-PC 11..338 36..365 434 34.7 Plus