Clone Sequence Records
BO14896.3prime Sequence
689 bp (643 high quality bases) assembled on 2006-05-29
> BO14896.3prime
ATGGTCTAGAAAGCTTGCAACATAATCCAACTGTATGTAGATCTGCTTGA
CGCCCACCGCCTCAAAGATCATCCGTGTGTGCGTCACCACGTACTTGGGA
TCGACGTTCTTGGACACCTCCAGCTTGAGTGCGCCCACATAGACATCGGA
GCAAAGGGTCCAGAAGTGCGGCTCCTGCACAGCGTAAACGCCAGCCAGGC
CGGTGACTTTCTGATAGCACTGCGGCAGCGATCGGTCCAGGTCGGCGGGT
TGTCGCTGCATCAGGATCATGATCGACTCCTTGATCAGACTCAGCACACT
GAGCGCTATCAGCAAGGCTATGAAGATGGAGCAAATGGGGTCCGCTATCA
TCCAGCCGAACATGTGCATCAGCACCGCCGAGATGATCACGCCCACCGAA
CCCAAAGTGTCCGCCAGGATGTGCAGGAAGACGCCGCGCATGATCTGCGA
GTTGCTGCCCGACATGTCGCCGTGCGAGTGGCCATGGCTGTCGTGATCGT
GTGAGTGTCCATGGCCATTGTCCAAGGTGATGGCTTGGTGATTGTGATTG
CCGGCGTCCGTGTGGCCGTGCGAGTGCCCGTGCCCATGACCACCACCGTG
GGAGTGTCCGTGTCCACCGTGCGAGTGTCCATGTCCGCCGTGATTGAAGG
CATAGATGCCCACCAGGTTCACCAGCAGTCCCAGCACGG
BO14896.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6672-PA | 1101 | CG6672-RA | 428..1098 | 689..19 | 3355 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 2003 | CG6672-RA | 770..1440 | 689..19 | 3355 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:47:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11212871..11213368 | 19..516 | 2490 | 100 | Plus |
3R | 32079331 | 3R | 11213456..11213630 | 515..689 | 875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:47:11 has no hits.
BO14896.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:39 Download gff for
BO14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-PA | 428..1101 | 16..689 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:19 Download gff for
BO14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-PA | 428..1101 | 16..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:52:43 Download gff for
BO14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 770..1446 | 13..689 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:59:10 Download gff for
BO14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT86D-RA | 770..1446 | 13..689 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:59:10 Download gff for
BO14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11212865..11213367 | 13..515 | 99 | <- | Plus |
3R | 11213457..11213630 | 516..689 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:52:43 Download gff for
BO14896.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7038587..7039089 | 13..515 | 99 | <- | Plus |
arm_3R | 7039179..7039352 | 516..689 | 100 | | Plus |
BO14896.5prime Sequence
817 bp (682 high quality bases) assembled on 2006-06-16
> BO14896.5prime
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGAAAGCGGACCCCATTT
GCTCCCTCTTCATAGCC
BO14896.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:28:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6672-PA | 1101 | CG6672-RA | 1..801 | 17..817 | 3955 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 2003 | CG6672-RA | 343..1143 | 17..817 | 3975 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11213456..11213877 | 618..197 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 11213168..11213368 | 817..617 | 975 | 99 | Minus |
3R | 32079331 | 3R | 11213947..11214128 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:02:51 has no hits.
BO14896.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:40 Download gff for
BO14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:21 Download gff for
BO14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-PA | 1..801 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:34 Download gff for
BO14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 343..1143 | 17..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:48 Download gff for
BO14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT86D-RA | 343..1143 | 17..817 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:48 Download gff for
BO14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11213168..11213367 | 618..817 | 99 | <- | Minus |
3R | 11213457..11213876 | 198..617 | 100 | <- | Minus |
3R | 11213948..11214128 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:34 Download gff for
BO14896.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7038890..7039089 | 618..817 | 99 | <- | Minus |
arm_3R | 7039179..7039598 | 198..617 | 100 | <- | Minus |
arm_3R | 7039670..7039850 | 17..197 | 100 | | Minus |
BO14896.complete Sequence
1132 bp (1132 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633269
> BO14896.complete
GAAGTTATCAGTCGACATGATACCGCTGTCGCACAAGGACCGGAGCAGTC
TGGGCTACCGGATCCGGGAGAAGCTCAACAGCTGGAAACGACTCATCTTC
TCCGACCGCAACTCCCGGAATCTGTTCCTCTTTCTGCTGCTCAACCTGAG
CTTCGCCTTCGTGGAGCTCTTCTACGGCATTGTGACGAACAGTTTGGGCC
TGATCTCCGACTCATTCCACATGTTCTTCGACTGCACTGGCCTCTTGGCG
GGACTGGCCGCGTCGGTTATCACCAAGTGGAAGGCCAACGACAAGTTCTC
CTACGGCTATGTGCGCGCCGAGGTGCTGGCCGGCTTCGTGAATAGCCTGT
TCCTGTTGTTCATAGCCTTCTTCATTCTGTCGGAGGGCGTGGAGCGACTT
ATCGAACCGCCGGAGGTCAAGCACGAGCGTCTGTTTGTCGTCTCCGTGCT
GGGACTGCTGGTGAACCTGGTGGGCATCTATGCCTTCAATCACGGCGGAC
ATGGACACTCGCACGGTGGACACGGACACTCCCACGGTGGTGGTCATGGG
CACGGGCACTCGCACGGCCACACGGACGCCGGCAATCACAATCACCAAGC
CATCACCTTGGACAATGGCCATGGACACTCACACGATCACGACAGCCATG
GCCACTCGCACGGCGACATGTCGGGCAGCAACTCGCAGATCATGCGCGGC
GTCTTCCTGCACATCCTGGCGGACACTTTGGGTTCGGTGGGCGTGATCAT
CTCGGCGGTGCTGATGCACATGTTCGGCTGGATGATAGCGGACCCCATTT
GCTCCATCTTCATAGCCTTGCTGATAGCGCTCAGTGTGCTGAGTCTGATC
AAGGAGTCGATCATGATCCTGATGCAGCGACAACCCGCCGACCTGGACCG
ATCGCTGCCGCAGTGCTATCAGAAAGTCACCGGCCTGGCTGGCGTTTACG
CTGTGCAGGAGCCGCACTTCTGGACCCTTTGCTCCGATGTCTATGTGGGC
GCACTCAAGCTGGAGGTGTCCAAGAACGTCGATCCCAAGTACGTGGTGAC
GCACACACGGATGATCTTTGAGGCGGTGGGCGTCAAGCAGATCTACATAC
AGTTGGATTATGTTGCAAGCTTTCTAGACCAT
BO14896.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 1101 | CG6672-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:54:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-RA | 2003 | CG6672-RA | 343..1440 | 17..1114 | 5490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:54:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11212871..11213368 | 1114..617 | 2490 | 100 | Minus |
3R | 32079331 | 3R | 11213456..11213877 | 618..197 | 2110 | 100 | Minus |
3R | 32079331 | 3R | 11213947..11214128 | 198..17 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:54:39 has no hits.
BO14896.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:16 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 1..1101 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:55 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 321..1424 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:53 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 343..1440 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:17 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6672-RA | 321..1424 | 17..1120 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:55:32 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ZnT86D-RA | 343..1440 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:55:32 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11212868..11213367 | 618..1116 | 99 | <- | Minus |
3R | 11213457..11213876 | 198..617 | 100 | <- | Minus |
3R | 11213948..11214128 | 17..197 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:53 Download gff for
BO14896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7038590..7039089 | 618..1116 | 99 | <- | Minus |
arm_3R | 7039179..7039598 | 198..617 | 100 | <- | Minus |
arm_3R | 7039670..7039850 | 17..197 | 100 | | Minus |
BO14896.pep Sequence
Translation from 16 to 1132
> BO14896.pep
MIPLSHKDRSSLGYRIREKLNSWKRLIFSDRNSRNLFLFLLLNLSFAFVE
LFYGIVTNSLGLISDSFHMFFDCTGLLAGLAASVITKWKANDKFSYGYVR
AEVLAGFVNSLFLLFIAFFILSEGVERLIEPPEVKHERLFVVSVLGLLVN
LVGIYAFNHGGHGHSHGGHGHSHGGGHGHGHSHGHTDAGNHNHQAITLDN
GHGHSHDHDSHGHSHGDMSGSNSQIMRGVFLHILADTLGSVGVIISAVLM
HMFGWMIADPICSIFIALLIALSVLSLIKESIMILMQRQPADLDRSLPQC
YQKVTGLAGVYAVQEPHFWTLCSDVYVGALKLEVSKNVDPKYVVTHTRMI
FEAVGVKQIYIQLDYVASFLDH
BO14896.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ZnT86D-PA | 366 | CG6672-PA | 1..366 | 1..366 | 1926 | 100 | Plus |
ZnT63C-PG | 449 | CG17723-PG | 11..338 | 36..365 | 434 | 34.7 | Plus |
ZnT63C-PE | 449 | CG17723-PE | 11..338 | 36..365 | 434 | 34.7 | Plus |
ZnT63C-PD | 449 | CG17723-PD | 11..338 | 36..365 | 434 | 34.7 | Plus |
ZnT63C-PC | 449 | CG17723-PC | 11..338 | 36..365 | 434 | 34.7 | Plus |