Clone Sequence Records
BO14903.3prime Sequence
836 bp (722 high quality bases) assembled on 2006-05-29
> BO14903.3prime
ATGGTCTAGAAAGCTTGCTACAAATGAGCCCAGTAGTCGCTTCAAAATTG
ACCACAATATTAGGGCAGCACCGCCACAAAGAGTGAACTGCAGCAGCCGA
TGAAGAAATTCAAACCTTTTATAGATCTTTCGTCCCCTTTCCACTACCTC
CTGTCCTGGTTCCTCCTTGGCGAGATAGATGCGAACTCCGGCCAGTGCCT
GTAGGAAGTAATCATCCCAGTCGACGCTGCTCATATTAAAATCGTAAAGC
TTTTGATCCTCGACAGACATTTTGGCCCACAACTTGCGGGTGTTGACGGT
ATCGAACGACCAGGATGTGATCACAAAGGGTGCCAGAATATCAATGTTCT
TGTGGATCTTGTCGTACAACTTGATCATACGTGGCTTTTTGCCCCATAAA
CGCAAGGCCAGATCAATGGCATAGCCGGGGAGCAGGTGATAAAAGATGGC
CGTGAACCGGAATAGCCAGGGAATGGTGGTGCAATGCAGAAACGGCAACC
ACATCATCTTGGTCAGTGGATACGTGTACCGCAGCCTCGCCGCCTTGTCC
CGAAATCCACCCCAGGTTATCAGGTTATCATTATTTGGCGTAAAATTGTA
GATAGGTGGCTCCGGCGATAGCTTGATACTTGTATCCCGGGCCGTGTTCC
AAGCGCAGGTCAGCACCATATTGACGCAGTAATCCACGGGTACAATTCCA
GCCTGGGCCTTAAGATTAAGCAGTGTGATATGCAGTATTCCGAAGGCTGC
TCCGTAGAGAACTGCAATGGGTCCGTACAGGTTGTCGATCCAGCCGGGCA
TGGGCTCCTTATAGCTGGCAATTATGACACCCGGAC
BO14903.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10096-PA | 1356 | CG10096-RA | 536..1353 | 836..19 | 4090 | 100 | Minus |
CG10096-PB | 1509 | CG10096-RB | 689..1506 | 836..19 | 4090 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:22:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10097-RC | 4716 | CG10097-RC | 3673..4490 | 836..19 | 4090 | 100 | Minus |
CG10097-RD | 5233 | CG10097-RD | 3673..4490 | 836..19 | 4090 | 100 | Minus |
CG10096-RD | 2358 | CG10096-RD | 798..1615 | 836..19 | 4090 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12391082..12391792 | 114..824 | 3555 | 100 | Plus |
3R | 32079331 | 3R | 12390909..12391007 | 19..117 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:22:22 has no hits.
BO14903.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:45 Download gff for
BO14903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-PB | 689..1509 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:27 Download gff for
BO14903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-PB | 689..1509 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:52:43 Download gff for
BO14903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RA | 3893..4713 | 15..836 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:18 Download gff for
BO14903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RD | 798..1618 | 15..836 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:18 Download gff for
BO14903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12390906..12391005 | 15..115 | 98 | <- | Plus |
3R | 12391084..12391792 | 116..824 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:52:43 Download gff for
BO14903.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8216628..8216727 | 15..115 | 98 | <- | Plus |
arm_3R | 8216806..8217514 | 116..824 | 100 | <- | Plus |
BO14903.5prime Sequence
799 bp (718 high quality bases) assembled on 2006-05-29
> BO14903.5prime
GAAGTTATCAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACA
AAACTGTCTTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATT
GCGAAGCTGCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCG
TGCCAAACGCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGG
ATCCGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGC
GTGGTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAA
CAGCGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGG
CGGCCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAAC
ACCCGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTT
GGAGTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGC
ACGTAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAG
ATCCTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGC
ACCGGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTC
TGACGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATT
TTTCGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTG
GATCGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCACCCTTC
BO14903.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10096-PB | 1509 | CG10096-RB | 1..783 | 17..799 | 3890 | 99.8 | Plus |
CG10096-PA | 1356 | CG10096-RA | 1..630 | 170..799 | 3125 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:49:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10096-RD | 2358 | CG10096-RD | 110..892 | 17..799 | 3900 | 99.9 | Plus |
CG10096-RB | 1841 | CG10096-RB | 110..892 | 17..799 | 3900 | 99.9 | Plus |
CG10097-RC | 4716 | CG10097-RC | 3059..3767 | 91..799 | 3530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12391848..12392359 | 716..205 | 2560 | 100 | Minus |
3R | 32079331 | 3R | 12392456..12392573 | 208..91 | 590 | 100 | Minus |
3R | 32079331 | 3R | 12391710..12391792 | 799..717 | 400 | 98.8 | Minus |
3R | 32079331 | 3R | 12392827..12392902 | 92..17 | 380 | 100 | Minus |
3R | 32079331 | 3R | 16618397..16618628 | 326..557 | 305 | 75.4 | Plus |
3R | 32079331 | 3R | 16615774..16615940 | 326..492 | 250 | 76.6 | Plus |
2L | 23513712 | 2L | 8520272..8520553 | 396..677 | 240 | 72.3 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:49:48 has no hits.
BO14903.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:46 Download gff for
BO14903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-PB | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:29 Download gff for
BO14903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-PB | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:45 Download gff for
BO14903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 102..892 | 9..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:49:11 Download gff for
BO14903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 102..892 | 9..799 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:49:11 Download gff for
BO14903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12391710..12391792 | 717..799 | 98 | <- | Minus |
3R | 12391848..12392358 | 206..716 | 100 | <- | Minus |
3R | 12392459..12392571 | 93..205 | 100 | <- | Minus |
3R | 12392827..12392910 | 9..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:45 Download gff for
BO14903.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8217432..8217514 | 717..799 | 98 | <- | Minus |
arm_3R | 8217570..8218080 | 206..716 | 100 | <- | Minus |
arm_3R | 8218181..8218293 | 93..205 | 100 | <- | Minus |
arm_3R | 8218549..8218632 | 9..92 | 96 | | Minus |
BO14903.complete Sequence
1540 bp assembled on 2007-07-13
GenBank Submission: FJ633270
> BO14903.complete
GAAGTTATCAGTCGACATGGCAACGGATGTGCAATCTTTTTACAAAGACA
AAACTGTCTTCCTAACAGGCGGCAGTGGATTCCTTGGAAAAGTGACCATT
GCGAAGCTGCTCTGCACCACCGAGGTGAAGCGCATCTATGTGCTGCTCCG
TGCCAAACGCGGCCAGGAAATGCGGGAGCGATGCGCCGCATGGGATAAGG
ATCCGGTATTCGGTAATCTAATGAAAACAAATCCCGAGGCTCTGAAGCGC
GTGGTACCTTGTGGTGGCGATTGCCAGGAGCCGGATCTTGGCCTGAGCAA
CAGCGATCGTCAGGTTTTGATAGATGAGGTGCAGATTGTTATCCACACGG
CGGCCACTGTGCGTTTTGTGGAGCCGCTGCACATCGCCCTGGCTGTTAAC
ACCCGAGCCACCCGACTCATGATTCAACTGGCCAAGGAGATGTCCCACTT
GGAGTCCTTTGTCCATGTGTCCACCGCGTACTCAAACTGCGTGGTGGAGC
ACGTAAGTGAACGCTTCTATCCGGAGCACTTGACCTGCCCTGCCGAAAAG
ATCCTAGAGCTGCTGGAAAGCATAAGTCCTGAGCTATTGGATAAAATGGC
ACCGGCGCTGATGGGCAAGTATCCCAATACGTATACGTATACCAAGGCTC
TGACGGAGCAGGTGATCCAGAAGGAGGCGAAAGATTTGCCGCTTAGCATT
TTTCGTCCGGGTGTCATAATTGCCAGCTATAAGGAGCCCATGCCCGGCTG
GATCGACAACCTGTACGGACCCATTGCAGTTCTCTACGGAGCAGCCTTCG
GAATACTGCATATCACACTGCTTAATCTTAAGGCCCAGGCTGGAATTGTA
CCCGTGGATTACTGCGTCAATATGGTGCTGACCTGCGCTTGGAACACGGC
CCGGGATACAAGTATCAAGCTATCGCCGGAGCCACCTATCTACAATTTTA
CGCCAAATAATGATAACCTGATAACCTGGGGTGGATTTCGGGACAAGGCG
GCGAGGCTGCGGTACACGTATCCACTGACCAAGATGATGTGGTTGCCGTT
TCTGCATTGCACCACCATTCCCTGGCTATTCCGGTTCACGGCCATCTTTT
ATCACCTGCTCCCCGGCTATGCCATTGATCTGGCCTTGCGTTTATGGGGC
AAAAAGCCACGTATGATCAAGTTGTACGACAAGATCCACAAGAACATTGA
TATTCTGGCACCCTTTGTGATCACATCCTGGTCGTTCGATACCGTCAACA
CCCGCAAGTTGTGGGCCAAAATGTCTGTCGAGGATCAAAAGCTTTACGAT
TTTAATATGAGCAGCGTCGACTGGGATGATTACTTCCTACAGGCACTGGC
CGGAGTTCGCATCTATCTCGCCAAGGAGGAACCAGGACAGGAGGTAGTGG
AAAGGGGACGAAAGATCTATAAAAGGTTTGAATTTCTTCATCGGCTGCTG
CAGTTCACTCTTTGTGGCGGTGCTGCCCTAATATTGTGGTCAATTTTGAA
GCGACTACTGGGCTCATTTGTAGCAAGCTTTCTAGACCAT
BO14903.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10096-RD | 1509 | CG10096-PD | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG10096-RB | 1509 | CG10096-PB | 1..1506 | 17..1522 | 7530 | 100 | Plus |
CG10096-RC | 1356 | CG10096-PC | 1..1353 | 170..1522 | 6765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10096-RD | 2358 | CG10096-RD | 110..1615 | 17..1522 | 7530 | 100 | Plus |
CG10096-RB | 1841 | CG10096-RB | 110..1615 | 17..1522 | 7530 | 100 | Plus |
CG10097-RC | 4716 | CG10097-RC | 3059..4490 | 91..1522 | 7160 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12391082..12391792 | 1427..717 | 3555 | 100 | Minus |
3R | 32079331 | 3R | 12391848..12392359 | 716..205 | 2560 | 100 | Minus |
3R | 32079331 | 3R | 12392456..12392573 | 208..91 | 590 | 100 | Minus |
3R | 32079331 | 3R | 12390909..12391007 | 1522..1424 | 495 | 100 | Minus |
3R | 32079331 | 3R | 12392827..12392902 | 92..17 | 380 | 100 | Minus |
3R | 32079331 | 3R | 16618397..16618628 | 326..557 | 305 | 75.4 | Plus |
3R | 32079331 | 3R | 16615774..16615940 | 326..492 | 250 | 76.6 | Plus |
2L | 23513712 | 2L | 8520272..8520553 | 396..677 | 240 | 72.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:32:57 has no hits.
BO14903.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:46 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 1..1509 | 17..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:24:07 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 102..1618 | 9..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:57 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 110..1615 | 17..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:47 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 102..1618 | 9..1526 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:33 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10096-RB | 110..1615 | 17..1524 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:33 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12390907..12391005 | 1426..1524 | 97 | <- | Minus |
3R | 12391084..12391792 | 717..1425 | 100 | <- | Minus |
3R | 12391848..12392358 | 206..716 | 100 | <- | Minus |
3R | 12392459..12392571 | 93..205 | 100 | <- | Minus |
3R | 12392827..12392902 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:57 Download gff for
BO14903.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8216629..8216727 | 1426..1524 | 97 | <- | Minus |
arm_3R | 8216806..8217514 | 717..1425 | 100 | <- | Minus |
arm_3R | 8217570..8218080 | 206..716 | 100 | <- | Minus |
arm_3R | 8218181..8218293 | 93..205 | 100 | <- | Minus |
arm_3R | 8218549..8218624 | 17..92 | 100 | | Minus |
BO14903.pep Sequence
Translation from 16 to 1540
> BO14903.pep
MATDVQSFYKDKTVFLTGGSGFLGKVTIAKLLCTTEVKRIYVLLRAKRGQ
EMRERCAAWDKDPVFGNLMKTNPEALKRVVPCGGDCQEPDLGLSNSDRQV
LIDEVQIVIHTAATVRFVEPLHIALAVNTRATRLMIQLAKEMSHLESFVH
VSTAYSNCVVEHVSERFYPEHLTCPAEKILELLESISPELLDKMAPALMG
KYPNTYTYTKALTEQVIQKEAKDLPLSIFRPGVIIASYKEPMPGWIDNLY
GPIAVLYGAAFGILHITLLNLKAQAGIVPVDYCVNMVLTCAWNTARDTSI
KLSPEPPIYNFTPNNDNLITWGGFRDKAARLRYTYPLTKMMWLPFLHCTT
IPWLFRFTAIFYHLLPGYAIDLALRLWGKKPRMIKLYDKIHKNIDILAPF
VITSWSFDTVNTRKLWAKMSVEDQKLYDFNMSSVDWDDYFLQALAGVRIY
LAKEEPGQEVVERGRKIYKRFEFLHRLLQFTLCGGAALILWSILKRLLGS
FVASFLDH
BO14903.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10096-PD | 502 | CG10096-PD | 1..502 | 1..502 | 2647 | 100 | Plus |
CG10096-PB | 502 | CG10096-PB | 1..502 | 1..502 | 2647 | 100 | Plus |
CG10096-PC | 451 | CG10096-PC | 1..451 | 52..502 | 2392 | 100 | Plus |
CG10096-PA | 451 | CG10096-PA | 1..451 | 52..502 | 2392 | 100 | Plus |
CG17562-PA | 499 | CG17562-PA | 1..499 | 1..498 | 1481 | 56.5 | Plus |