Clone Sequence Records
BO14904.3prime Sequence
515 bp (514 high quality bases) assembled on 2006-05-29
> BO14904.3prime
ATGGTCTAGAAAGCTTGCGTAATGGGGCTCCTTGCCGAAAAAGGAGAAGG
TCTCGTTGCAGCGAATCTCGTAGCAGTCCGGAAAGGATGTGAAGTGCCTC
GATAAGCGCAGATCGAATATGAATTCACAGTACGGATAAATTGGCGGAAA
CCAGAGAAAGCAGCGATATGTGCAGAGTATGCCAAAGGGTCGCTTAAATT
CTCCATCTGGCGTTTGGATCGAGCCGGAATTGTGCTTTTTCCAGCATTGC
GATGCCCAGCTTCCATGGTTGTAATCACATAAACAGCAGAGGATTAACAG
CAGAACAAATGCGATTGTTGTGGTGCTTTTGCGAGTGTGTATTGCAGTTA
TGGTTGCCGCCGTAGAATTTGTGGTTCTCGTTTCTGTTATCGATTTGGCC
ATTGCACAACAATCGTAAACACAACCGCCGCCGCCAAAATCAGAATCGAA
TTCTGGGCCAGAATTTGTAGATAAATTTGATTCGGAACCTGAGCCTGCCA
TGTCGACTGATAACT
BO14904.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-PA | 486 | CG1545-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:00:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 717 | CG1545-RB | 98..582 | 503..19 | 2425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:00:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11059279..11059522 | 260..503 | 1220 | 100 | Plus |
X | 23542271 | X | 11057680..11057800 | 19..139 | 605 | 100 | Plus |
X | 23542271 | X | 11058365..11058485 | 140..260 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:00:07 has no hits.
BO14904.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:47 Download gff for
BO14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-PA | 1..486 | 16..501 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:31 Download gff for
BO14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-PA | 1..486 | 16..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:38:00 Download gff for
BO14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 12..503 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:14 Download gff for
BO14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 12..503 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:14 Download gff for
BO14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11057674..11057800 | 12..139 | 96 | <- | Plus |
X | 11058365..11058485 | 140..260 | 100 | <- | Plus |
X | 11059280..11059522 | 261..503 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:38:00 Download gff for
BO14904.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10951707..10951833 | 12..139 | 96 | <- | Plus |
arm_X | 10952398..10952518 | 140..260 | 100 | <- | Plus |
arm_X | 10953313..10953555 | 261..503 | 100 | | Plus |
BO14904.5prime Sequence
515 bp (514 high quality bases) assembled on 2006-05-29
> BO14904.5prime
GAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTATCTA
CAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTT
TACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAA
TTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAA
CAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAAC
CATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGAT
CCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACAT
ATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATA
TTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGA
GATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACG
CAAGCTTTCTAGACC
BO14904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-PA | 486 | CG1545-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 717 | CG1545-RB | 98..582 | 15..499 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:01:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11059279..11059522 | 258..15 | 1220 | 100 | Minus |
X | 23542271 | X | 11057680..11057800 | 499..379 | 605 | 100 | Minus |
X | 23542271 | X | 11058365..11058485 | 378..258 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:01:15 has no hits.
BO14904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:48 Download gff for
BO14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-PA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:32 Download gff for
BO14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-PA | 1..486 | 17..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:40:16 Download gff for
BO14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:41:33 Download gff for
BO14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..506 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:41:33 Download gff for
BO14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11057674..11057800 | 379..506 | 96 | <- | Minus |
X | 11058365..11058485 | 258..378 | 100 | <- | Minus |
X | 11059280..11059522 | 15..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:40:16 Download gff for
BO14904.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10951707..10951833 | 379..506 | 96 | <- | Minus |
arm_X | 10952398..10952518 | 258..378 | 100 | <- | Minus |
arm_X | 10953313..10953555 | 15..257 | 100 | | Minus |
BO14904.complete Sequence
517 bp (517 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633271
> BO14904.complete
GAAGTTATCAGTCGACATGGCAGGCTCAGGTTCCGAATCAAATTTATCTA
CAAATTCTGGCCCAGAATTCGATTCTGATTTTGGCGGCGGCGGTTGTGTT
TACGATTGTTGTGCAATGGCCAAATCGATAACAGAAACGAGAACCACAAA
TTCTACGGCGGCAACCATAACTGCAATACACACTCGCAAAAGCACCACAA
CAATCGCATTTGTTCTGCTGTTAATCCTCTGCTGTTTATGTGATTACAAC
CATGGAAGCTGGGCATCGCAATGCTGGAAAAAGCACAATTCCGGCTCGAT
CCAAACGCCAGATGGAGAATTTAAGCGACCCTTTGGCATACTCTGCACAT
ATCGCTGCTTTCTCTGGTTTCCGCCAATTTATCCGTACTGTGAATTCATA
TTCGATCTGCGCTTATCGAGGCACTTCACATCCTTTCCGGACTGCTACGA
GATTCGCTGCAACGAGACCTTCTCCTTTTTCGGCAAGGAGCCCCATTACG
CAAGCTTTCTAGACCAT
BO14904.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:12:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 387 | CG1545-PB | 1..384 | 116..499 | 1920 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-RB | 717 | CG1545-RB | 98..582 | 15..499 | 2425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11059279..11059522 | 258..15 | 1220 | 100 | Minus |
X | 23542271 | X | 11057680..11057800 | 499..379 | 605 | 100 | Minus |
X | 23542271 | X | 11058365..11058485 | 378..258 | 605 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:12:29 has no hits.
BO14904.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:04 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 1..387 | 116..502 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:22:52 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:49:42 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 100..582 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:04 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 98..588 | 15..506 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:08:36 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1545-RB | 100..582 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:08:36 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11057676..11057800 | 379..501 | 98 | <- | Minus |
X | 11058365..11058485 | 258..378 | 100 | <- | Minus |
X | 11059280..11059520 | 17..257 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:49:42 Download gff for
BO14904.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 10951709..10951833 | 379..501 | 98 | <- | Minus |
arm_X | 10952398..10952518 | 258..378 | 100 | <- | Minus |
arm_X | 10953313..10953553 | 17..257 | 100 | | Minus |
BO14904.pep Sequence
Translation from 16 to 517
> BO14904.pep
MAGSGSESNLSTNSGPEFDSDFGGGGCVYDCCAMAKSITETRTTNSTAAT
ITAIHTRKSTTTIAFVLLLILCCLCDYNHGSWASQCWKKHNSGSIQTPDG
EFKRPFGILCTYRCFLWFPPIYPYCEFIFDLRLSRHFTSFPDCYEIRCNE
TFSFFGKEPHYASFLDH
BO14904.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1545-PB | 128 | CG1545-PB | 1..128 | 34..161 | 724 | 100 | Plus |
CG1537-PA | 135 | CG1537-PA | 59..128 | 84..148 | 148 | 37.1 | Plus |