Clone Sequence Records
BO14906.3prime Sequence
906 bp (834 high quality bases) assembled on 2006-05-29
> BO14906.3prime
ATGGTCTAGAAAGCTTGCTTCATCGCCGCCACCCTCTTCGTCTTCATCGA
ATTCGCCCTCCTCATCGGCAGTCGCCTCCTGGTACTGCTGATATTCAGAA
ACCAAGTCGTTCATGTTGCTCTCGGCCTCTGTGAATTCCATTTCGTCCAT
TCCCTCGCCGGTGTACCAATGCAAGAAGGCCTTCCTTCGGAACATGGCGG
TGAACTGCTCCGAAACCCGTTTGAATAGCTCCTGAATGGCGGTGGAGTTG
CCAATGAAGGTGGCCGACATCTTGAGACCTCTGGGCGGAATATCGCACAC
CGCTGTCTTGCAGTTATTCGGGATCCATTCCACGAAGAAGCTGCTGTTCT
TGTTCTGAATGTTGAGCATCTGCTCGTCCACCTCCTTCATGGACATGCGG
CCACGGAAGATGGCGGCGACGGTCAGATAGCGACCATGTCGCGGATCGCA
CGCAGCCATCATGTTCTTGGCATCGAACATCTGCTGGGTCAGCTCCGGAA
CGGTAAGGGCCCGGTATTGTTGCGATCCTCGCGAGGTGAGCGGTGCGAAT
CCGGGCATGAAGAAGTGCAGCCGGGGGAAGGGTACCATGTTCACGGCCAG
CTTGCGAAGATCAGCGTTCAGCTGGCCAGGGAAGCGCAGGCAGGTCGTCA
CACCAGACATGGTGGCCGAAACCAGATGGTTCAGGTCACCGTAGGTGGGC
GTGGTCAGCTTCAGTGTGCGGAAGCAGATGTCATACAACGCCTCGTTGTC
GATGCAGTACGTCTCATCGGTGTTCTCCACCAGCTGATGCACACTCAGGG
TGGCATTGTAGGGCTCCACCACCGTATCGGACACCTTGGGCGAGGGCACA
CCGAGAAGGTGTTCATGATGCNGTCCGGGTACTCCTCGCGGATCTTCGAG
ATCAGC
BO14906.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9359-PA | 1341 | betaTub85D-RA | 508..1338 | 849..19 | 4155 | 100 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 712..920 | 663..455 | 470 | 88.9 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 901..1013 | 651..539 | 415 | 94.6 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 712..902 | 645..455 | 405 | 88.4 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 739..929 | 645..455 | 405 | 88.4 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 496..686 | 645..455 | 405 | 88.4 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 496..686 | 645..455 | 405 | 88.4 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 934..1037 | 423..320 | 320 | 92.3 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 961..1064 | 423..320 | 320 | 92.3 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 718..821 | 423..320 | 320 | 92.3 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 718..821 | 423..320 | 320 | 92.3 | Minus |
| CG9359-PA | 1341 | betaTub85D-RA | 450..507 | 906..849 | 271 | 98.2 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1369..1445 | 183..107 | 260 | 93.5 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 1174..1250 | 183..107 | 260 | 93.5 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 1201..1277 | 183..107 | 260 | 93.5 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 958..1034 | 183..107 | 260 | 93.5 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 958..1034 | 183..107 | 260 | 93.5 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 1192..1301 | 183..74 | 250 | 89 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 589..656 | 786..719 | 240 | 94.1 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 468..525 | 906..849 | 221 | 94.8 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 958..1010 | 417..365 | 215 | 96.2 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 752..802 | 773..723 | 205 | 96 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1276..1323 | 276..229 | 165 | 93.7 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 454..503 | 902..853 | 156 | 92 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 628..683 | 729..674 | 155 | 91 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 655..710 | 729..674 | 155 | 91 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 412..467 | 729..674 | 155 | 91 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 412..467 | 729..674 | 155 | 91 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 1057..1136 | 300..221 | 150 | 87.5 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 1084..1163 | 300..221 | 150 | 87.5 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 841..920 | 300..221 | 150 | 87.5 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 841..920 | 300..221 | 150 | 87.5 | Minus |
| CG3401-PA | 1365 | betaTub60D-RA | 526..579 | 849..796 | 145 | 90.7 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 1057..1095 | 495..457 | 145 | 94.8 | Minus |
| CG9277-PB | 1344 | betaTub56D-RB | 565..617 | 792..740 | 140 | 90.5 | Minus |
| CG9277-PA | 1371 | betaTub56D-RA | 592..644 | 792..740 | 140 | 90.5 | Minus |
| CG9277-PC | 1128 | betaTub56D-RC | 349..401 | 792..740 | 140 | 90.5 | Minus |
| CG9277-PD | 1128 | betaTub56D-RD | 349..401 | 792..740 | 140 | 90.5 | Minus |
| CG4869-PA | 1569 | betaTub97EF-RA | 571..617 | 786..740 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:50:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 680..1568 | 906..19 | 4409 | 99.8 | Minus |
| betaTub56D-RA | 1701 | CG9277-RA | 666..1526 | 906..47 | 2424 | 85.6 | Minus |
| betaTub56D-RB | 1596 | CG9277-RB | 561..1421 | 906..47 | 2424 | 85.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9408656..9409544 | 19..906 | 4384 | 99.8 | Plus |
| 2R | 25286936 | 2R | 19447494..19448354 | 47..906 | 2399 | 85.5 | Plus |
| 2R | 25286936 | 2R | 24311250..24312099 | 906..58 | 2329 | 85.2 | Minus |
| 3R | 32079331 | 3R | 27967268..27967587 | 78..397 | 805 | 83.4 | Plus |
| 3R | 32079331 | 3R | 27968929..27969189 | 404..664 | 720 | 85.1 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 674..836 | 410 | 83.4 | Plus |
| 3R | 32079331 | 3R | 27969439..27969553 | 723..837 | 260 | 81.7 | Plus |
| 3R | 32079331 | 3R | 27972919..27972993 | 833..906 | 224 | 89.3 | Plus |
| 3L | 28110227 | 3L | 6531605..6531726 | 663..542 | 220 | 78.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:50:34 has no hits.
BO14906.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:49 Download gff for
BO14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9359-PA | 450..1341 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:34 Download gff for
BO14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9359-PA | 450..1341 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:07:50 Download gff for
BO14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 680..1571 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:53:30 Download gff for
BO14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 680..1571 | 15..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:53:30 Download gff for
BO14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9408653..9409544 | 15..906 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:07:50 Download gff for
BO14906.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234375..5235266 | 15..906 | 99 | | Plus |
BO14906.5prime Sequence
850 bp (744 high quality bases) assembled on 2006-05-29
> BO14906.5prime
GAAGTTATCAGTCGACATGCGTGAAATTGTACACATTCAGGCCGGTCAAT
GCGGTAACCAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGATGAGCAC
TGTATAGATGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGA
GCGCATCAATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCAC
GCGCAATTCTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCT
GGCGCCTTTGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATC
GGGAGCAGGCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAAC
TGGTGGATTCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGAT
TGCCTTCAGGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTC
CGGCATGGGAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACC
GCATCATGAACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACG
GTGGTGGAGCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAA
CACCGATGAGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCT
TCCGCACACTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTG
GTTTCGGCCACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCA
GCTGAACGCTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTCCCCC
GGCTGCACTTCTTCATGCCGGGATTCGCACCGCTCACCTCGCGAGGATCG
BO14906.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9359-PA | 1341 | betaTub85D-RA | 1..834 | 17..850 | 4145 | 99.8 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 397..579 | 395..577 | 515 | 91.2 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 364..557 | 380..573 | 395 | 88.1 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 901..1013 | 722..834 | 390 | 93.8 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 421..561 | 437..577 | 330 | 89.3 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 448..588 | 437..577 | 330 | 89.3 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 205..345 | 437..577 | 330 | 89.3 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 205..345 | 437..577 | 330 | 89.3 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 712..852 | 710..850 | 280 | 87.9 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 244..341 | 260..357 | 265 | 90.8 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 271..368 | 260..357 | 265 | 90.8 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 28..125 | 260..357 | 265 | 90.8 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 28..125 | 260..357 | 265 | 90.8 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 589..656 | 587..654 | 240 | 94.1 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 712..803 | 728..819 | 210 | 89.1 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 739..830 | 728..819 | 210 | 89.1 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 496..587 | 728..819 | 210 | 89.1 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 496..587 | 728..819 | 210 | 89.1 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 752..802 | 600..650 | 205 | 96 | Plus |
| CG3401-PA | 1365 | betaTub60D-RA | 301..344 | 299..342 | 170 | 95.4 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 628..683 | 644..699 | 155 | 91 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 655..710 | 644..699 | 155 | 91 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 412..467 | 644..699 | 155 | 91 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 412..467 | 644..699 | 155 | 91 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 283..326 | 299..342 | 145 | 93.1 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 565..617 | 581..633 | 140 | 90.5 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 592..644 | 581..633 | 140 | 90.5 | Plus |
| CG9277-PC | 1128 | betaTub56D-RC | 349..401 | 581..633 | 140 | 90.5 | Plus |
| CG9277-PD | 1128 | betaTub56D-RD | 349..401 | 581..633 | 140 | 90.5 | Plus |
| CG4869-PA | 1569 | betaTub97EF-RA | 571..617 | 587..633 | 135 | 91.4 | Plus |
| CG9277-PB | 1344 | betaTub56D-RB | 127..158 | 143..174 | 135 | 96.8 | Plus |
| CG9277-PA | 1371 | betaTub56D-RA | 154..185 | 143..174 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:47:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 231..1064 | 17..850 | 4155 | 99.9 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 118..944 | 23..849 | 2020 | 83.1 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1049 | 74..849 | 1945 | 83.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:47:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9409160..9409603 | 850..407 | 2205 | 99.8 | Minus |
| 3R | 32079331 | 3R | 9409659..9410052 | 410..17 | 1970 | 100 | Minus |
| 2R | 25286936 | 2R | 19447971..19448746 | 849..74 | 1945 | 83.4 | Minus |
| 2R | 25286936 | 2R | 24311188..24311634 | 404..850 | 1380 | 87.2 | Plus |
| 3R | 32079331 | 3R | 27972919..27973153 | 540..306 | 725 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27969060..27969189 | 838..709 | 485 | 91.5 | Minus |
| 2R | 25286936 | 2R | 24310910..24311138 | 182..410 | 425 | 79 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 699..537 | 410 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969553 | 650..536 | 260 | 81.7 | Minus |
| 3L | 28110227 | 3L | 6531605..6531726 | 710..831 | 235 | 79.5 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:47:33 has no hits.
BO14906.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:37:50 Download gff for
BO14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9359-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:35 Download gff for
BO14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9359-PA | 1..834 | 17..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:23:25 Download gff for
BO14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1064 | 5..850 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:48:42 Download gff for
BO14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1064 | 5..850 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:48:42 Download gff for
BO14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9409160..9409600 | 410..850 | 99 | <- | Minus |
| 3R | 9409660..9410063 | 5..409 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:23:25 Download gff for
BO14906.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234882..5235322 | 410..850 | 99 | <- | Minus |
| arm_3R | 5235382..5235785 | 5..409 | 98 | | Minus |
BO14906.complete Sequence
1372 bp (1372 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633272
> BO14906.complete
GAAGTTATCAGTCGACATGCGTGAAATTGTACACATTCAGGCCGGTCAAT
GCGGTAACCAGATCGGTGGTAAATTCTGGGAGGTAATCTCGGATGAGCAC
TGTATAGATGCGACCGGAACGTACTACGGCGATAGTGATCTCCAGCTGGA
GCGCATCAATGTATACTACAATGAAGCCACCGGTGCCAAGTATGTGCCAC
GCGCAATTCTCGTGGACCTGGAGCCCGGCACCATGGATTCGGTTCGTTCT
GGCGCCTTTGGCCAGATCTTCCGGCCGGACAATTTTGTGTTTGGCCAATC
GGGAGCAGGCAACAACTGGGCCAAGGGTCATTACACCGAGGGTGCTGAAC
TGGTGGATTCCGTCTTGGATGTGGTGCGAAAGGAGTCCGAGGGATGCGAT
TGCCTTCAGGGCTTCCAGCTGACCCACTCGCTGGGTGGCGGCACTGGCTC
CGGCATGGGAACCCTGCTGATCTCGAAGATCCGCGAGGAGTACCCGGACC
GCATCATGAACACCTTCTCGGTGGTGCCCTCGCCCAAGGTGTCCGATACG
GTGGTGGAGCCCTACAATGCCACCCTGAGTGTGCATCAGCTGGTGGAGAA
CACCGATGAGACGTACTGCATCGACAACGAGGCGTTGTATGACATCTGCT
TCCGCACACTGAAGCTGACCACGCCCACCTACGGTGACCTGAACCATCTG
GTTTCGGCCACCATGTCTGGTGTGACGACCTGCCTGCGCTTCCCTGGCCA
GCTGAACGCTGATCTTCGCAAGCTGGCCGTGAACATGGTACCCTTCCCCC
GGCTGCACTTCTTCATGCCCGGATTCGCACCGCTCACCTCGCGAGGATCG
CAACAATACCGGGCCCTTACCGTTCCGGAGCTGACCCAGCAGATGTTCGA
TGCCAAGAACATGATGGCTGCGTGCGATCCGCGACATGGTCGCTATCTGA
CCGTCGCCGCCATCTTCCGTGGCCGCATGTCCATGAAGGAGGTGGACGAG
CAGATGCTCAACATTCAGAACAAGAACAGCAGCTTCTTCGTGGAATGGAT
CCCGAATAACTGCAAGACAGCGGTGTGCGATATTCCGCCCAGAGGTCTCA
AGATGTCGGCCACCTTCATTGGCAACTCCACCGCCATTCAGGAGCTATTC
AAACGGGTTTCGGAGCAGTTCACCGCCATGTTCCGAAGGAAGGCCTTCTT
GCATTGGTACACCGGCGAGGGAATGGACGAAATGGAATTCACAGAGGCCG
AGAGCAACATGAACGACTTGGTTTCTGAATATCAGCAGTACCAGGAGGCG
ACTGCCGATGAGGAGGGCGAATTCGATGAAGACGAAGAGGGTGGCGGCGA
TGAAGCAAGCTTTCTAGACCAT
BO14906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1341 | CG9359-PA | 1..1338 | 17..1354 | 6690 | 100 | Plus |
| betaTub56D-RB | 1344 | CG9277-PB | 7..1310 | 23..1326 | 3400 | 84 | Plus |
| betaTub56D-RA | 1371 | CG9277-PA | 85..1337 | 74..1326 | 3325 | 84.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:57:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-RA | 1841 | CG9359-RA | 231..1568 | 17..1354 | 6690 | 100 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 118..1421 | 23..1326 | 3400 | 84 | Plus |
| betaTub56D-RA | 1701 | CG9277-RA | 274..1526 | 74..1326 | 3325 | 84.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:57:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9408656..9409603 | 1354..407 | 4740 | 100 | Minus |
| 2R | 25286936 | 2R | 19447494..19448746 | 1326..74 | 3325 | 84.4 | Minus |
| 2R | 25286936 | 2R | 24311188..24312099 | 404..1315 | 2580 | 85.5 | Plus |
| 3R | 32079331 | 3R | 9409659..9410052 | 410..17 | 1970 | 100 | Minus |
| 3R | 32079331 | 3R | 27967268..27967587 | 1295..976 | 805 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27972919..27973153 | 540..306 | 725 | 87.2 | Minus |
| 3R | 32079331 | 3R | 27968929..27969189 | 969..709 | 720 | 85.1 | Minus |
| 2R | 25286936 | 2R | 24310910..24311138 | 182..410 | 425 | 79 | Plus |
| 3R | 32079331 | 3R | 27969667..27969829 | 699..537 | 410 | 83.4 | Minus |
| 3R | 32079331 | 3R | 27969439..27969553 | 650..536 | 260 | 81.7 | Minus |
| 3L | 28110227 | 3L | 6531605..6531726 | 710..831 | 220 | 78.7 | Plus |
| 3L | 28110227 | 3L | 6531932..6532036 | 1037..1141 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:57:37 has no hits.
BO14906.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:18 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 1..1341 | 17..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:57 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1571 | 5..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:46:37 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 231..1568 | 17..1356 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:18 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 220..1571 | 5..1358 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:06:54 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub85D-RA | 231..1568 | 17..1356 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:06:54 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9408654..9409600 | 410..1356 | 99 | <- | Minus |
| 3R | 9409660..9410052 | 17..409 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:46:37 Download gff for
BO14906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5234376..5235322 | 410..1356 | 99 | <- | Minus |
| arm_3R | 5235382..5235774 | 17..409 | 100 | | Minus |
BO14906.pep Sequence
Translation from 16 to 1372
> BO14906.pep
MREIVHIQAGQCGNQIGGKFWEVISDEHCIDATGTYYGDSDLQLERINVY
YNEATGAKYVPRAILVDLEPGTMDSVRSGAFGQIFRPDNFVFGQSGAGNN
WAKGHYTEGAELVDSVLDVVRKESEGCDCLQGFQLTHSLGGGTGSGMGTL
LISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETY
CIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADL
RKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM
AACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSFFVEWIPNNCK
TAVCDIPPRGLKMSATFIGNSTAIQELFKRVSEQFTAMFRRKAFLHWYTG
EGMDEMEFTEAESNMNDLVSEYQQYQEATADEEGEFDEDEEGGGDEASFL
DH
BO14906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub85D-PA | 446 | CG9359-PA | 1..446 | 1..446 | 2365 | 100 | Plus |
| betaTub56D-PB | 447 | CG9277-PB | 1..446 | 1..446 | 2248 | 94.6 | Plus |
| betaTub56D-PA | 456 | CG9277-PA | 29..455 | 20..446 | 2152 | 94.6 | Plus |
| betaTub60D-PB | 453 | CG3401-PB | 1..446 | 1..441 | 2112 | 88.1 | Plus |
| betaTub60D-PA | 454 | CG3401-PA | 1..447 | 1..441 | 2111 | 87.9 | Plus |
