Clone Sequence Records
BO14917.3prime Sequence
819 bp (736 high quality bases) assembled on 2006-05-29
> BO14917.3prime
ATGGTCTAGAAAGCTTGCCGCCGACATCGTCTTGACCGTGGACGACACTC
CGGACGTGGCCATTGCCTTGGCGCTGCGCGCCACCATAGTCCGTATGCGT
TCCTGGAGATAATCACAGATGGAGGTGTACTTTTGCTGGTGCGCCAACTG
CAGGGCCGTCAGACCATCGTGGTTCTTCAGCAGGACATCGCTGCCGGCGG
CCACCAGCTGCTTGCAGACGGTCATGTGGCCAAACATGGCGGCGGCATGC
AGTGCGGACTCTCCATTGGGCAGCTGGCCGAGATTGGGTCGGTATTTGAG
CAGCACGGTGATTACGGCGGCATGGCCCTTGTGAGCCGCCTTGAAGAGGG
GCGTGGCGCCGTCGCAACGCACGGTGTCCACATTGGCGCCGTTCTGGAGC
AGCACCTTGCATATGTGATCCTGTCCCATCTGGGCTGCTATCCACAGGGG
CGTGGCGCCGTCTATCCGCTTGATATCGATCTCGGCACCAGCCTGAATCA
GCAGCGACAGAACCGTGCGATGGCCATTTTGGGCGGAGATAAAAACCGGC
GTGGCTCGATCCTTCATGTGCGCATTGACATTCGCTCCGCAGTCCAAGAG
CTCGCGAACGATCTTCACGTGACCACCCTGGCAGGCCACAAAAAGGGGCG
TGCCGCCATCCGCGGAGGGCGTGTCCACGCTGGCGCCCGCCTTTATCAGA
ATCTTCACCACGTCCAGGTGGCCGCCTTGGGCGGCGAAGAAAAGGGGCGT
GGTGCCCGTTAGGCGACGCGAGTTTGGATCGGCTCCCTGATCGAGCAGCT
CCATCACGCAGTAGGTGTG
BO14917.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-PA | 966 | CG3104-RA | 163..963 | 819..19 | 4005 | 100 | Minus |
CG3104-PB | 966 | CG3104-RB | 163..963 | 819..19 | 4005 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-RC | 2395 | CG3104-RC | 1092..1892 | 819..19 | 4005 | 100 | Minus |
CG3104-RB | 1933 | CG3104-RB | 630..1430 | 819..19 | 4005 | 100 | Minus |
CG3104-RA | 2213 | CG3104-RA | 667..1467 | 819..19 | 4005 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:06:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2849735..2850279 | 19..563 | 2725 | 100 | Plus |
2L | 23513712 | 2L | 2850334..2850592 | 561..819 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:06:42 has no hits.
BO14917.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:08 Download gff for
BO14917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-PA | 163..966 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:01 Download gff for
BO14917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-PB | 163..966 | 15..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:30 Download gff for
BO14917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RA | 667..1471 | 14..819 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:22 Download gff for
BO14917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RA | 667..1471 | 14..819 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:22 Download gff for
BO14917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2849731..2850277 | 14..561 | 99 | <- | Plus |
2L | 2850335..2850592 | 562..819 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:30 Download gff for
BO14917.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2849731..2850277 | 14..561 | 99 | <- | Plus |
arm_2L | 2850335..2850592 | 562..819 | 100 | | Plus |
BO14917.5prime Sequence
900 bp (825 high quality bases) assembled on 2006-05-29
> BO14917.5prime
GAAGTTATCAGTCGACATGTCGCTTAAGAAGGAGACGCCCTCGGATGTGC
AACTGCACATGGCAGCGATGAGGGGAGATGAGGTGGCTCTTCTTCGCGTT
CTGGACAGTGGCAAAGTGCATGTCGACTGCAAGGATGAGGATGGAACCAC
CCCACTGATTTTGGCTGCTGCCGGAGGTCACACCTACTGCGTGATGGAGC
TGCTCGATCAGGGAGCCGATCCAAACTCGCGTCGCCTAACGGGCACCACG
CCCCTTTTCTTCGCCGCCCAAGGCGGCCACCTGGACGTGGTGAAGATTCT
GATAAAGGCGGGCGCCAGCGTGGACACGCCCTCCGCGGATGGCGGCACGC
CCCTTTTTGTGGCCTGCCAGGGTGGTCACGTGAAGATCGTTCGCGAGCTC
TTGGACTGCGGAGCGAATGTCAATGCGCACATGAAGGATCGAGCCACGCC
GGTTTTTATCTCCGCCCAAAATGGCCATCGCACGGTTCTGTCGCTGCTGA
TTCAGGCTGGTGCCGAGATCGATATCAAGCGGATAGACGGCGCCACGCCC
CTGTGGATAGCAGCCCAGATGGGACAGGATCACATATGCAAGGTGCTGCT
CCAGAACGGCGCCAATGTGGACACCGTGCGTTGCGACGGCGCCACGCCCC
TCTTCAAGGCGGCTCACAAGGGCCATGCCGCCGTAATCACCGTGCTGCTC
AAATACCGACCCAATCTCGGCCAGCTGCCCAATGGAGAGTCCGCACTGCA
TGCCGCCGCCATGTTTGGCCACATGACCGTCTGCAAGCAGCTGGTGGCCG
CCGGCAGCGATGTCCTGCTGAAGAACCACGATGGTCTGACGGCCCTGCAG
TTGGCGCACCAGCAAAAGTACACCTCCATCTGTGATTATCTCCAGGAACG
BO14917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-PA | 966 | CG3104-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
CG3104-PB | 966 | CG3104-RB | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:03:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-RC | 2395 | CG3104-RC | 929..1813 | 16..900 | 4425 | 100 | Plus |
CG3104-RB | 1933 | CG3104-RB | 467..1351 | 16..900 | 4425 | 100 | Plus |
CG3104-RA | 2213 | CG3104-RA | 504..1388 | 16..900 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2849814..2850279 | 900..435 | 2330 | 100 | Minus |
2L | 23513712 | 2L | 2850334..2850633 | 437..138 | 1500 | 100 | Minus |
2L | 23513712 | 2L | 2852146..2852259 | 140..27 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:03:42 has no hits.
BO14917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:09 Download gff for
BO14917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-PA | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:03 Download gff for
BO14917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-PB | 1..884 | 17..900 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:13 Download gff for
BO14917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RA | 500..1388 | 9..900 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:32 Download gff for
BO14917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RA | 500..1388 | 9..900 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:32 Download gff for
BO14917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2849814..2850277 | 437..900 | 100 | <- | Minus |
2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
2L | 2852147..2852268 | 18..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:13 Download gff for
BO14917.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2849814..2850277 | 437..900 | 100 | <- | Minus |
arm_2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
arm_2L | 2852147..2852268 | 18..139 | 96 | | Minus |
BO14917.complete Sequence
997 bp assembled on 2007-10-17
GenBank Submission: FJ633275
> BO14917.complete
GAAGTTATCAGTCGACATGTCGCTTAAGAAGGAGACGCCCTCGGATGTGC
AACTGCACATGGCAGCGATGAGGGGAGATGAGGTGGCTCTTCTTCGCGTT
CTGGACAGTGGCAAAGTGCATGTCGACTGCAAGGATGAGGATGGAACCAC
CCCACTGATTTTGGCTGCTGCCGGAGGTCACACCTACTGCGTGATGGAGC
TGCTCGATCAGGGAGCCGATCCAAACTCGCGTCGCCTAACGGGCACCACG
CCCCTTTTCTTCGCCGCCCAAGGCGGCCACCTGGACGTGGTGAAGATTCT
GATAAAGGCGGGCGCCAGCGTGGACACGCCCTCCGCGGATGGCGGCACGC
CCCTTTTTGTGGCCTGCCAGGGTGGTCACGTGAAGATCGTTCGCGAGCTC
TTGGACTGCGGAGCGAATGTCAATGCGCACATGAAGGATCGAGCCACGCC
GGTTTTTATCTCCGCCCAAAATGGCCATCGCACGGTTCTGTCGCTGCTGA
TTCAGGCTGGTGCCGAGATCGATATCAAGCGGATAGACGGCGCCACGCCC
CTGTGGATAGCAGCCCAGATGGGACAGGATCACATATGCAAGGTGCTGCT
CCAGAACGGCGCCAATGTGGACACCGTGCGTTGCGACGGCGCCACGCCCC
TCTTCAAGGCGGCTCACAAGGGCCATGCCGCCGTAATCACCGTGCTGCTC
AAATACCGACCCAATCTCGGCCAGCTGCCCAATGGAGAGTCCGCACTGCA
TGCCGCCGCCATGTTTGGCCACATGACCGTCTGCAAGCAGCTGGTGGCCG
CCGGCAGCGATGTCCTGCTGAAGAACCACGATGGTCTGACGGCCCTGCAG
TTGGCGCACCAGCAAAAGTACACCTCCATCTGTGATTATCTCCAGGAACG
CATACGGACTATGGTGGCGCGCAGCGCCAAGGCAATGGCCACGTCCGGAG
TGTCGTCCACGGTCAAGACGATGTCGGCGGCAAGCTTTCTAGACCAT
BO14917.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-RC | 966 | CG3104-PC | 1..963 | 17..979 | 4815 | 100 | Plus |
CG3104-RB | 966 | CG3104-PB | 1..963 | 17..979 | 4815 | 100 | Plus |
CG3104-RA | 966 | CG3104-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-RC | 2395 | CG3104-RC | 929..1892 | 16..979 | 4820 | 100 | Plus |
CG3104-RB | 1933 | CG3104-RB | 467..1430 | 16..979 | 4820 | 100 | Plus |
CG3104-RA | 2213 | CG3104-RA | 504..1467 | 16..979 | 4820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2849735..2850279 | 979..435 | 2725 | 100 | Minus |
2L | 23513712 | 2L | 2850334..2850633 | 437..138 | 1500 | 100 | Minus |
2L | 23513712 | 2L | 2852146..2852259 | 140..27 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:22:42 has no hits.
BO14917.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:29 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RB | 1..966 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:46 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RB | 461..1431 | 9..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:24 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RA | 505..1467 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:33:43 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RB | 466..1428 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:05 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3104-RA | 505..1467 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:05 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2849733..2850277 | 437..981 | 99 | <- | Minus |
2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
2L | 2852147..2852268 | 18..139 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:24 Download gff for
BO14917.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2849733..2850277 | 437..981 | 99 | <- | Minus |
arm_2L | 2850335..2850631 | 140..436 | 100 | <- | Minus |
arm_2L | 2852147..2852268 | 18..139 | 96 | | Minus |
BO14917.pep Sequence
Translation from 16 to 997
> BO14917.pep
MSLKKETPSDVQLHMAAMRGDEVALLRVLDSGKVHVDCKDEDGTTPLILA
AAGGHTYCVMELLDQGADPNSRRLTGTTPLFFAAQGGHLDVVKILIKAGA
SVDTPSADGGTPLFVACQGGHVKIVRELLDCGANVNAHMKDRATPVFISA
QNGHRTVLSLLIQAGAEIDIKRIDGATPLWIAAQMGQDHICKVLLQNGAN
VDTVRCDGATPLFKAAHKGHAAVITVLLKYRPNLGQLPNGESALHAAAMF
GHMTVCKQLVAAGSDVLLKNHDGLTALQLAHQQKYTSICDYLQERIRTMV
ARSAKAMATSGVSSTVKTMSAASFLDH
BO14917.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3104-PC | 321 | CG3104-PC | 1..321 | 1..321 | 1647 | 100 | Plus |
CG3104-PB | 321 | CG3104-PB | 1..321 | 1..321 | 1647 | 100 | Plus |
CG3104-PA | 321 | CG3104-PA | 1..321 | 1..321 | 1647 | 100 | Plus |
Ank2-PN | 1159 | CG34416-PN | 539..785 | 13..259 | 372 | 34.7 | Plus |
Ank2-PX | 547 | CG42734-PX | 242..525 | 13..296 | 365 | 33.7 | Plus |
Ank2-PX | 547 | CG42734-PX | 24..323 | 25..325 | 342 | 31.2 | Plus |
Ank2-PX | 547 | CG42734-PX | 176..488 | 13..325 | 318 | 28.3 | Plus |
Ank2-PX | 547 | CG42734-PX | 114..422 | 13..292 | 317 | 30.6 | Plus |