Clone Sequence Records
BO14918.3prime Sequence
916 bp (792 high quality bases) assembled on 2006-05-29
> BO14918.3prime
ATGGTCTAGAAAGCTTGCATCGCCTTTGCGAGGCTTGCGCTTGCGCACCT
GTTCCGTCTTCTCGGGCGCAGCATCGCCGGCCTGCTTGGGCTCCGGCTTC
TCTTCCTTTTCCGGCTCGCTGTCGGCCTCCTTCTCTTTAGTGGCCAGATC
GCCCACCTGCTCCTCGCTGTCCTCTTCCTCTTCGTCGTCGTCCTCCTGTT
CTTCCTCGTCGCTATCGCGTTGCTCGTCATCGTTCTCCTCGGCGTCGCCA
TCATCCTCGATCTCCTCGGTTGCCAAATCCTCCAGGCCCTCGGTCAGATT
GTCCTGGGACTCGGAGAAGCTCTGGCGCTGCGACTTCTTGGGTGGGTAGA
CAAAGTCCACAAGGCACACGAGCAGCAGCCCCAGGGCAGCGCCCACGAAG
ATGGTGGCGATGGCGAAGAGGGCGTAGGAGCCCCACGTGGGCAGTCCGTA
TTCCTCCTGCAGGCGCCCGTTGAAGTCCTTCAGAGTGTGCGAAAGCTTGA
AGAAGTAGGACAGCACGGACATGTGGGTGGTGTCGGGCTTCTTCCAGGCG
GACAGCGGTTCGATGCTCTGCCACTGCTGCTTCTTCACGAAGTAGAGGAG
GGCGTCGCCATCACGGGCCCCACGATACTGCCGGAACTCGCCATCTTTTA
CGTGGTAGATGGTGGGGAGGGCGGTGACAAAGAAGCGTCCACTCAGCGAG
GGCGAGGTTGTCACGTCGATTTTGGCCACCTGCACCTGGACATCCTTGGC
CACGCGGGCAAACCGCTCCCAGGTGGGAGCCAGGTTCTTGCAGGCCGGGC
ACCATGGAGCAAAGAACTCGATCATCCATTCCCCCTGGAGCATCAGGTGC
CAGTTGTCCTCCTCCAACTCGATAAACTTGCCCACTGGCTGCAGCCCTGA
CTGCGCTGGTGCCGTC
BO14918.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-PA | 972 | CG5554-RA | 72..969 | 916..19 | 4315 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:52:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 1565 | CG5554-RA | 230..1127 | 916..19 | 4385 | 99.2 | Minus |
CG5554-RB | 1586 | CG5554-RB | 230..1148 | 916..19 | 4165 | 97 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:52:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23846125..23846586 | 480..19 | 2310 | 100 | Minus |
2R | 25286936 | 2R | 23845766..23845941 | 652..477 | 880 | 100 | Minus |
2R | 25286936 | 2R | 23845535..23845696 | 814..653 | 810 | 100 | Minus |
2R | 25286936 | 2R | 23845230..23845331 | 916..815 | 405 | 93.1 | Minus |
Blast to na_te.dros performed 2015-01-30 18:52:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2298..2405 | 264..158 | 114 | 60 | Minus |
BO14918.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:10 Download gff for
BO14918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-PA | 72..972 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:05 Download gff for
BO14918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-PA | 72..972 | 18..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:06 Download gff for
BO14918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 230..1127 | 19..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:15:47 Download gff for
BO14918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 230..1127 | 19..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:15:47 Download gff for
BO14918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23845230..23845331 | 815..916 | 93 | -> | Minus |
2R | 23845535..23845696 | 653..814 | 100 | -> | Minus |
2R | 23845766..23845940 | 478..652 | 100 | -> | Minus |
2R | 23846128..23846586 | 19..477 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:06 Download gff for
BO14918.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19732753..19732854 | 815..916 | 93 | -> | Minus |
arm_2R | 19733058..19733219 | 653..814 | 100 | -> | Minus |
arm_2R | 19733289..19733463 | 478..652 | 100 | -> | Minus |
arm_2R | 19733651..19734109 | 19..477 | 100 | | Minus |
BO14918.5prime Sequence
826 bp (768 high quality bases) assembled on 2006-05-29
> BO14918.5prime
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
GCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAG
GAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCAC
CATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACT
TTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAG
GACAATCTGACCGACGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGA
TGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAAGCGACGAG
GAAGAACAGGAGGACGACGACGAACA
BO14918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-PA | 972 | CG5554-RA | 1..775 | 17..791 | 3850 | 99.8 | Plus |
CG5554-PA | 972 | CG5554-RA | 775..807 | 792..824 | 165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:20:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 1565 | CG5554-RA | 157..965 | 15..824 | 4010 | 99.8 | Plus |
CG5554-RB | 1586 | CG5554-RB | 157..986 | 15..824 | 3790 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23846125..23846424 | 524..824 | 1440 | 99.3 | Plus |
2R | 25286936 | 2R | 23845766..23845941 | 352..527 | 880 | 100 | Plus |
2R | 25286936 | 2R | 23845157..23845331 | 15..189 | 875 | 100 | Plus |
2R | 25286936 | 2R | 23845535..23845696 | 190..351 | 810 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 05:20:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 198..239 | 47..88 | 120 | 76.2 | Plus |
blood | 7410 | blood BLOOD 7410bp | 7209..7250 | 47..88 | 120 | 76.2 | Plus |
BO14918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:11 Download gff for
BO14918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-PA | 1..807 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:06 Download gff for
BO14918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-PA | 1..807 | 17..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:51 Download gff for
BO14918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 151..965 | 7..825 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:31:50 Download gff for
BO14918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 151..965 | 7..825 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:31:50 Download gff for
BO14918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23845151..23845331 | 7..189 | 98 | -> | Plus |
2R | 23845535..23845696 | 190..351 | 100 | -> | Plus |
2R | 23845766..23845940 | 352..526 | 100 | -> | Plus |
2R | 23846128..23846424 | 527..825 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:51 Download gff for
BO14918.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19732674..19732854 | 7..189 | 98 | -> | Plus |
arm_2R | 19733058..19733219 | 190..351 | 100 | -> | Plus |
arm_2R | 19733289..19733463 | 352..526 | 100 | -> | Plus |
arm_2R | 19733651..19733947 | 527..825 | 98 | | Plus |
BO14918.complete Sequence
1003 bp (1003 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633276
> BO14918.complete
GAAGTTATCAGTCGACATGCATAGCACATCGTACTTTGTGGCCGCGACAT
GCGCGGCGCTGCTTCTGCTGGCGGCGACGGCGCAGTCGACGGCAGCAGCG
CAGTCAGGACTGCAGCCAGGTGGCAAGTTAATCGAGTTGGACGAGGACAA
CTGGCACCTGATGCTCCAGGGCGAATGGATGATCGAGTTCTTTGCTCCAT
GGTGCCCGGCCTGCAAGAACCTGGCTCCCACCTGGGAGCGGTTTGCCCGC
GTGGCCAAGGATGTCCAGGTGCAGGTGGCCAAAATCGACGTGACAACCTC
GCCCTCGCTGAGTGGACGCTTCTTTGTCACCGCCCTCCCCACCATCTACC
ACGTAAAAGATGGCGAGTTCCGGCAGTATCGTGGGGCCCGTGATGGCGAC
GCCCTCCTCTACTTCGTGAAGAAGCAGCAGTGGCAGAGCATCGAACCGCT
GTCCGCCTGGAAGAAGCCCGACACCACCCACATGTCCGTGCTGTCCTACT
TCTTCAAGCTTTCGCACACTCTGAAGGACTTCAACGGGCGCCTGCAGGAG
GAATACGGACTGCCCACGTGGGGCTCCTACGCCCTCTTCGCCATCGCCAC
CATCTTCGTGGGCGCTGCCCTGGGGCTGCTGCTCGTGTGCCTTGTGGACT
TTGTCTACCCACCCAAGAAGTCGCAGCGCCAGAGCTTCTCCGAGTCCCAG
GACAATCTGACCGAGGGCCTGGAGGATTTGGCAACCGAGGAGATCGAGGA
TGATGGCGACGCCGAGGAGAACGATGACGAGCAACGCGATAGCGACGAGG
AAGAACAGGAGGACGACGACGAAGAGGAAGAGGACAGCGAGGAGCAGGTG
GGCGATCTGGCCACTAAAGAGAAGGAGGCCGACAGCGAGCCGGAAAAGGA
AGAGAAGCCGGAGCCCAAGCAGGCCGGCGATGCTGCGCCCGAGAAGACGG
AACAGGTGCGCAAGCGCAAGCCTCGCAAAGGCGATGCAAGCTTTCTAGAC
CAT
BO14918.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 972 | CG5554-PA | 1..969 | 17..985 | 4845 | 100 | Plus |
CG5554-RB | 993 | CG5554-PB | 1..990 | 17..985 | 4600 | 97.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:18:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-RA | 1565 | CG5554-RA | 157..1127 | 15..985 | 4855 | 100 | Plus |
CG5554-RB | 1586 | CG5554-RB | 157..1148 | 15..985 | 4610 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23846125..23846586 | 524..985 | 2310 | 100 | Plus |
2R | 25286936 | 2R | 23845766..23845941 | 352..527 | 880 | 100 | Plus |
2R | 25286936 | 2R | 23845157..23845331 | 15..189 | 875 | 100 | Plus |
2R | 25286936 | 2R | 23845535..23845696 | 190..351 | 810 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
blood | 7410 | blood BLOOD 7410bp | 198..239 | 47..88 | 120 | 76.2 | Plus |
blood | 7410 | blood BLOOD 7410bp | 7209..7250 | 47..88 | 120 | 76.2 | Plus |
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 2298..2405 | 740..846 | 114 | 60 | Plus |
BO14918.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:19 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 1..972 | 17..986 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:59 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 260..1236 | 7..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:56 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 159..1127 | 17..987 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:19 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 260..1236 | 7..985 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:16 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5554-RA | 159..1127 | 17..987 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:16 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23845159..23845331 | 17..189 | 100 | -> | Plus |
2R | 23845535..23845696 | 190..351 | 100 | -> | Plus |
2R | 23845766..23845940 | 352..526 | 100 | -> | Plus |
2R | 23846128..23846586 | 527..987 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:56 Download gff for
BO14918.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19732682..19732854 | 17..189 | 100 | -> | Plus |
arm_2R | 19733058..19733219 | 190..351 | 100 | -> | Plus |
arm_2R | 19733289..19733463 | 352..526 | 100 | -> | Plus |
arm_2R | 19733651..19734109 | 527..987 | 99 | | Plus |
BO14918.pep Sequence
Translation from 16 to 1003
> BO14918.pep
MHSTSYFVAATCAALLLLAATAQSTAAAQSGLQPGGKLIELDEDNWHLML
QGEWMIEFFAPWCPACKNLAPTWERFARVAKDVQVQVAKIDVTTSPSLSG
RFFVTALPTIYHVKDGEFRQYRGARDGDALLYFVKKQQWQSIEPLSAWKK
PDTTHMSVLSYFFKLSHTLKDFNGRLQEEYGLPTWGSYALFAIATIFVGA
ALGLLLVCLVDFVYPPKKSQRQSFSESQDNLTEGLEDLATEEIEDDGDAE
ENDDEQRDSDEEEQEDDDEEEEDSEEQVGDLATKEKEADSEPEKEEKPEP
KQAGDAAPEKTEQVRKRKPRKGDASFLDH
BO14918.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5554-PA | 323 | CG5554-PA | 1..323 | 1..323 | 1695 | 100 | Plus |
CG5554-PB | 330 | CG5554-PB | 1..330 | 1..323 | 1677 | 97.9 | Plus |
prtp-PD | 353 | CG1837-PD | 103..206 | 36..136 | 185 | 39.4 | Plus |
prtp-PC | 416 | CG1837-PC | 166..269 | 36..136 | 185 | 39.4 | Plus |
prtp-PB | 416 | CG1837-PB | 166..269 | 36..136 | 185 | 39.4 | Plus |
prtp-PC | 416 | CG1837-PC | 1..208 | 1..189 | 166 | 27.4 | Plus |