Clone Sequence Records
BO14919.3prime Sequence
806 bp (760 high quality bases) assembled on 2006-05-29
> BO14919.3prime
ATGGTCTAGAAAGCTTGCATCATTTACTTCGAACTCTTTGGAAATCGGTA
AGAACATGTCATCGTATGGGACCTTTTTGAAAATATCCTCGAAAACGGAG
CGAAACACACCGGCGAATATTTTCAGGTTTGTGGGCTCCAGCTCGTTCCA
AAACTCAACCCAGTGCAGATTGAACACCTGATTAATGGCTATCGTCATAT
CCGTGTTGGATTCGAAAAAGTTGTCTAGCCAGAATACCCATCGGTCCATG
GTCACGAAGGGGGTTAGCTCGTATATCTTCAAGTAGCGCTTATTATTGCG
ATACTCCATTATGACCTTCAATTTGAGAACAAAGCGAAAGTTCTGAAAAT
CCGAAAGGGATTCCCCCGTGGAATTCATCTGTACAATCCACACCCTTCCC
ATACTGAAGTAATCGCCCTTATGGATTAGACTGGGTATCCGGCCGTGTAT
TTCAATCAAGCTGGATGTGGGATTCTCATCAAACCCACTGACCTTCGTGA
TCGTCGTGTTCTCGAAGCCGTAGTTCACTTGATTGAACAGATCGAAGTTC
AACCAGAAGGCGCCTACCATTGCATCATTCCAGAACTTTGAGTCCCTAAT
GTCCACCACATCAATGGGCTTCAATCCGATCGCCGGTATGCCTTTGGGAT
AATTCTTTATTATAGCATTCATGGAATTAACAATGCACTTAGAATCTCCA
AAGCGGCACTTCTTAATTTCCTTTGGGAGAATTTGGGCTTGCAACGATCC
GATGATCTGCAGGAGCACCAGAACGATTATTGTATCTTTCCTGTCGACTG
AAAACT
BO14919.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-PA | 777 | CG31207-RA | 3..774 | 790..19 | 3835 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 47..818 | 790..19 | 3845 | 99.9 | Minus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 548..442 | 205 | 79.4 | Minus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 548..442 | 205 | 79.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 242..725 | 2420 | 100 | Plus |
| 3R | 32079331 | 3R | 21046049..21046272 | 19..242 | 1120 | 100 | Plus |
| 3R | 32079331 | 3R | 21046917..21046981 | 726..790 | 310 | 98.5 | Plus |
| 3R | 32079331 | 3R | 21048315..21048421 | 442..548 | 205 | 79.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:47:00 has no hits.
BO14919.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:12 Download gff for
BO14919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:07 Download gff for
BO14919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-PA | 1..777 | 15..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:52:42 Download gff for
BO14919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 40..823 | 14..797 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:49 Download gff for
BO14919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 40..823 | 14..797 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:49 Download gff for
BO14919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046044..21046271 | 14..241 | 99 | <- | Plus |
| 3R | 21046336..21046819 | 242..725 | 100 | <- | Plus |
| 3R | 21046917..21046988 | 726..797 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:52:42 Download gff for
BO14919.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16871766..16871993 | 14..241 | 99 | <- | Plus |
| arm_3R | 16872058..16872541 | 242..725 | 100 | <- | Plus |
| arm_3R | 16872639..16872710 | 726..797 | 94 | | Plus |
BO14919.5prime Sequence
807 bp (743 high quality bases) assembled on 2006-05-29
> BO14919.5prime
GAAGTTATCAGTCGACATGAAAGATACAATAATCGTTCTGGTGCTCCTGC
AGATCATCGGATCGTTGCAAGGCCAAATTCTCCCAAAGGAAATTAAGAAG
TGCCGCTTTGGAGATTCTAAGTGCATTGTTAATTCCATGAATGCTATAAT
AAAGAATTATCCCAAAGGCATACCGGCGATCGGATTGAAGCCCATTGATG
TGGTGGACATTAGGGACTCAAAGTTCTGGAATGATGCAATGGTAGGCGCC
TTCTGGTTGAACTTCGATCTGTTCAATCAAGTGAACTACGGCTTCGAGAA
CACGACGATCACGAAGGTCAGTGGGTTTGATGAGAATCCCACATCCAGCT
TGATTGAAATACACGGCCGGATACCCAGTCTAATCCATAAGGGCGATTAC
TTCAGTATGGGAAGGGTGTGGATTGTACAGATGAATTCCACGGGGGAATC
CCTTTCGGATTTTCAGAACTTTCGCTTTGTTCTCAAATTGAAGGTCATAA
TGGAGTATCGCAATAATAAGCGCTACTTGAAGATATACGAGCTAACCCCC
TTCGTGACCATGGACCGATGGGTATTCTGGCTAGACAACTTTTTCGAATC
CAACACGGATATGACGATAGCCATTAATCAGGTGTTCAATCTGCACTGGG
TTGAGTTTTGGAACGAGCTGGAGCCCACAAACCTGAAAATATTCGCCGGT
GCCTTTCGCTCCGTTTTCGAGGATATTTTCAAAAAGGTCCCATACCGATG
ACATGTTCTTACCGATTTCCAAAGAGTTCGAAGTAAATGATGCAAGCTTT
CTAGACC
BO14919.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-PA | 777 | CG31207-RA | 1..729 | 17..745 | 3595 | 99.7 | Plus |
| CG31207-PA | 777 | CG31207-RA | 729..774 | 746..791 | 230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:56:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 45..818 | 17..791 | 3820 | 99.6 | Plus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:56:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 567..84 | 2420 | 100 | Minus |
| 3R | 32079331 | 3R | 21046049..21046272 | 791..567 | 1045 | 98.7 | Minus |
| 3R | 32079331 | 3R | 21046917..21046983 | 83..17 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21048315..21048421 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:56:46 has no hits.
BO14919.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:13 Download gff for
BO14919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-PA | 1..777 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:09 Download gff for
BO14919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-PA | 1..777 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:12:22 Download gff for
BO14919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..823 | 6..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:30:42 Download gff for
BO14919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 36..823 | 6..796 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:30:42 Download gff for
BO14919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046917..21046992 | 6..83 | 94 | | Minus |
| 3R | 21046044..21046271 | 568..796 | 97 | <- | Minus |
| 3R | 21046336..21046819 | 84..567 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:12:22 Download gff for
BO14919.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16872639..16872714 | 6..83 | 94 | | Minus |
| arm_3R | 16871766..16871993 | 568..796 | 97 | <- | Minus |
| arm_3R | 16872058..16872541 | 84..567 | 100 | <- | Minus |
BO14919.complete Sequence
808 bp (808 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633277
> BO14919.complete
GAAGTTATCAGTCGACATGAAAGATACAATAATCGTTCTGGTGCTCCTGC
AGATCATCGGATCGTTGCAAGGCCAAATTCTCCCAAAGGAAATTAAGAAG
TGCCGCTTTGGAGATTCTAAGTGCATTGTTAATTCCATGAATGCTATAAT
AAAGAATTATCCCAAAGGCATACCGGCGATCGGATTGAAGCCCATTGATG
TGGTGGACATTAGGGACTCAAAGTTCTGGAATGATGCAATGGTAGGCGCC
TTCTGGTTGAACTTCGATCTGTTCAATCAAGTGAACTACGGCTTCGAGAA
CACGACGATCACGAAGGTCAGTGGGTTTGATGAGAATCCCACATCCAGCT
TGATTGAAATACACGGCCGGATACCCAGTCTAATCCATAAGGGCGATTAC
TTCAGTATGGGAAGGGTGTGGATTGTACAGATGAATTCCACGGGGGAATC
CCTTTCGGATTTTCAGAACTTTCGCTTTGTTCTCAAATTGAAGGTCATAA
TGGAGTATCGCAATAATAAGCGCTACTTGAAGATATACGAGCTAACCCCC
TTCGTGACCATGGACCGATGGGTATTCTGGCTAGACAACTTTTTCGAATC
CAACACGGATATGACGATAGCCATTAATCAGGTGTTCAATCTGCACTGGG
TTGAGTTTTGGAACGAGCTGGAGCCCACAAACCTGAAAATATTCGCCGGT
GTGTTTCGCTCCGTTTTCGAGGATATTTTCAAAAAGGTCCCATACGATGA
CATGTTCTTACCGATTTCCAAAGAGTTCGAAGTAAATGATGCAAGCTTTC
TAGACCAT
BO14919.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 777 | CG31207-PA | 1..774 | 17..790 | 3870 | 100 | Plus |
| CG7079-RB | 768 | CG7079-PB | 245..351 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 768 | CG7079-PA | 245..351 | 261..367 | 205 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:15:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-RA | 835 | CG31207-RA | 45..818 | 17..790 | 3870 | 100 | Plus |
| CG7079-RB | 1237 | CG7079-RB | 348..454 | 261..367 | 205 | 79.4 | Plus |
| CG7079-RA | 934 | CG7079-RA | 348..454 | 261..367 | 205 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:15:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21046336..21046819 | 567..84 | 2420 | 100 | Minus |
| 3R | 32079331 | 3R | 21046049..21046272 | 790..567 | 1120 | 100 | Minus |
| 3R | 32079331 | 3R | 21046917..21046983 | 83..17 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 21048315..21048421 | 367..261 | 205 | 79.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:15:03 has no hits.
BO14919.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:20 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 1..777 | 17..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:00 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 39..826 | 6..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:37:51 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 45..818 | 17..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:20 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 39..826 | 6..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:06:51 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31207-RA | 45..818 | 17..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:06:51 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21046047..21046271 | 568..792 | 99 | <- | Minus |
| 3R | 21046336..21046819 | 84..567 | 100 | <- | Minus |
| 3R | 21046917..21046983 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:37:51 Download gff for
BO14919.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16871769..16871993 | 568..792 | 99 | <- | Minus |
| arm_3R | 16872058..16872541 | 84..567 | 100 | <- | Minus |
| arm_3R | 16872639..16872705 | 17..83 | 100 | | Minus |
BO14919.pep Sequence
Translation from 16 to 808
> BO14919.pep
MKDTIIVLVLLQIIGSLQGQILPKEIKKCRFGDSKCIVNSMNAIIKNYPK
GIPAIGLKPIDVVDIRDSKFWNDAMVGAFWLNFDLFNQVNYGFENTTITK
VSGFDENPTSSLIEIHGRIPSLIHKGDYFSMGRVWIVQMNSTGESLSDFQ
NFRFVLKLKVIMEYRNNKRYLKIYELTPFVTMDRWVFWLDNFFESNTDMT
IAINQVFNLHWVEFWNELEPTNLKIFAGVFRSVFEDIFKKVPYDDMFLPI
SKEFEVNDASFLDH
BO14919.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31207-PA | 258 | CG31207-PA | 1..258 | 1..258 | 1369 | 100 | Plus |
| CG7079-PB | 255 | CG7079-PB | 7..249 | 7..248 | 824 | 59.3 | Plus |
| CG7079-PA | 255 | CG7079-PA | 7..249 | 7..248 | 824 | 59.3 | Plus |
| CG31189-PB | 258 | CG31189-PB | 18..250 | 17..249 | 634 | 48.1 | Plus |
| CG11852-PA | 250 | CG11852-PA | 23..248 | 23..248 | 298 | 28.9 | Plus |
