Clone BO14920 Report

Search the DGRC for BO14920

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCG31275-RA
Protein status:BO14920.pep: validated full length
Sequenced Size:337

Clone Sequence Records

BO14920.5prime Sequence

335 bp (334 high quality bases) assembled on 2006-05-29

> BO14920.5prime
GAAGTTATCAGTCGACATGAATCGCATTCTCGAGAAGGTGATTCACCAGA
ATGGAACAATCGTGGATCGCATTCTATCGGAACATACTATTGGGTATGTG
GTGTCCGATAACACAGCCAATGCGGTGGCCGAAACATCCTTCGATAACAC
AAGTGCCCAGGCGATCCTGAAGCACTTACATGGACTCCTGGTGAGCACCT
GCCAAAGCGTAGTCCGGGACATTGACCCGTCCAACAAACTCTGCTTCATG
CGCCTGGGCACTCGCAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTT
CACCATTACAGTGGTTCAAGCAAGCTTTCTAGACC

BO14920.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-PB 306 CG31275-RB 1..303 17..319 1515 100 Plus
CG31275-PA 306 CG31275-RA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 594 CG31275-RA 62..364 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16750971..16751273 319..17 1515 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:51:56 has no hits.

BO14920.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:15 Download gff for BO14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-PA 1..306 17..322 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:12 Download gff for BO14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-PA 1..306 17..322 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:23 Download gff for BO14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..423 17..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:05:32 Download gff for BO14920.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 62..368 17..323 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:05:32 Download gff for BO14920.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16750966..16751273 17..323 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:23 Download gff for BO14920.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12576688..12576995 17..323 99   Minus

BO14920.3prime Sequence

335 bp (334 high quality bases) assembled on 2006-05-29

> BO14920.3prime
ATGGTCTAGAAAGCTTGCTTGAACCACTGTAATGGTGAAGTACTCCTCTG
GGGCCACCAGATACTCGAACTTGCGAGTGCCCAGGCGCATGAAGCAGAGT
TTGTTGGACGGGTCAATGTCCCGGACTACGCTTTGGCAGGTGCTCACCAG
GAGTCCATGTAAGTGCTTCAGGATCGCCTGGGCACTTGTGTTATCGAAGG
ATGTTTCGGCCACCGCATTGGCTGTGTTATCGGACACCACATACCCAATA
GTATGTTCCGATAGAATGCGATCCACGATTGTTCCATTCTGGTGAATCAC
CTTCTCGAGAATGCGATTCATGTCGACTGATAACT

BO14920.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-PB 306 CG31275-RB 1..303 321..19 1515 100 Minus
CG31275-PA 306 CG31275-RA 1..303 321..19 1515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 594 CG31275-RA 62..364 321..19 1515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16750971..16751273 19..321 1515 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:47:02 has no hits.

BO14920.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:14 Download gff for BO14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-PA 1..306 16..321 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:10 Download gff for BO14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-PA 1..306 16..321 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 12:36:26 Download gff for BO14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..423 15..321 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:06:41 Download gff for BO14920.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 62..368 15..321 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:06:41 Download gff for BO14920.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16750966..16751273 15..321 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 12:36:26 Download gff for BO14920.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12576688..12576995 15..321 99   Plus

BO14920.complete Sequence

337 bp (337 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633278

> BO14920.complete
GAAGTTATCAGTCGACATGAATCGCATTCTCGAGAAGGTGATTCACCAGA
ATGGAACAATCGTGGATCGCATTCTATCGGAACATACTATTGGGTATGTG
GTGTCCGATAACACAGCCAATGCGGTGGCCGAAACATCCTTCGATAACAC
AAGTGCCCAGGCGATCCTGAAGCACTTACATGGACTCCTGGTGAGCACCT
GCCAAAGCGTAGTCCGGGACATTGACCCGTCCAACAAACTCTGCTTCATG
CGCCTGGGCACTCGCAAGTTCGAGTATCTGGTGGCCCCAGAGGAGTACTT
CACCATTACAGTGGTTCAAGCAAGCTTTCTAGACCAT

BO14920.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:52:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 306 CG31275-PA 1..303 17..319 1515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-RA 594 CG31275-RA 62..364 17..319 1515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:52:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16750971..16751273 319..17 1515 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:52:07 has no hits.

BO14920.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:21 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 1..306 17..322 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:36:02 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..423 17..323 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:00:00 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..419 17..321 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:21 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RB 117..423 17..323 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:00 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
CG31275-RA 62..364 17..321 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:00 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16750968..16751273 17..321 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:00:00 Download gff for BO14920.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12576690..12576995 17..321 99   Minus

BO14920.pep Sequence

Translation from 16 to 337

> BO14920.pep
MNRILEKVIHQNGTIVDRILSEHTIGYVVSDNTANAVAETSFDNTSAQAI
LKHLHGLLVSTCQSVVRDIDPSNKLCFMRLGTRKFEYLVAPEEYFTITVV
QASFLDH

BO14920.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:47:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG31275-PA 101 CG31275-PA 1..101 1..101 513 100 Plus
robl62A-PB 104 CG1014-PB 7..103 3..100 243 49 Plus
robl62A-PA 104 CG1014-PA 7..103 3..100 243 49 Plus