Clone BO14924 Report

Search the DGRC for BO14924

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptCG18404-RA
Protein status:BO14924.pep: Imported from assembly
Sequenced Size:574

Clone Sequence Records

BO14924.3prime Sequence

572 bp (571 high quality bases) assembled on 2006-05-29

> BO14924.3prime
ATGGTCTAGAAAGCTTGCGAGGTTGGTGAGGGCATTAGCCAGATCGCCTA
GGCCAGCATTTAGCTGCTTTATATAAGGGGCAGCTGCATCTGCAGCAGCG
GCAATAGTCTTCGCACTCACGGCTCCTCCTTTGGCTATAATAGAAGCACC
ATTGGACGAAAGACTGCGAGCCTGAGGTGCGTTCGTCATCTGAACACTAA
GACTGGTAATGGCATTAGCCAAATCTCCAAGACCAGTGCCCACTCCACCC
AGAACATTGCCCAAGAGATTGGTGGCCTCGGGTTGCATATAATCGTTATC
CACTCTTAAACTAGTAAGGGCGTTAGCCAGATCACCCAAGGCGTTTCCCA
TGTCGCTTAGAATGTTCAAAGTGGTTGGCTGGACAAAATCCGATTGAGAG
CTGGCCACAGCGTTTTCCAGTTGATGGATGACCTTCTCCCCAGCAACAGC
CACTTGGGACACATCTCCCATCAGGGACCCAATGCTGAGAGTTCCAGCTC
TTGAATTTTGGACCATCAAAACGATGGTGAAAAGGGTTAGAATTGTAAAA
GACTGCATGTCGACTGATAACT

BO14924.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-PA 543 CG18404-RA 1..540 558..19 2700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 607 CG18404-RA 9..550 560..19 2710 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30253190..30253425 560..325 1180 100 Minus
3R 32079331 3R 30253485..30253592 324..217 540 100 Minus
3R 32079331 3R 30253873..30253959 123..37 435 100 Minus
3R 32079331 3R 30253660..30253719 216..157 300 100 Minus
3R 32079331 3R 30253774..30253812 161..123 180 97.4 Minus
Blast to na_te.dros performed on 2015-02-11 18:17:42 has no hits.

BO14924.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:19 Download gff for BO14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-PA 1..543 16..558 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:18 Download gff for BO14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-PA 1..543 16..558 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:34 Download gff for BO14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..561 10..566 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:53:21 Download gff for BO14924.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..561 10..566 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:53:21 Download gff for BO14924.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30253185..30253425 325..566 98 -> Minus
3R 30253485..30253592 217..324 100 -> Minus
3R 30253660..30253719 157..216 100 -> Minus
3R 30253779..30253811 124..156 100 -> Minus
3R 30253873..30253959 37..123 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:34 Download gff for BO14924.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26078907..26079147 325..566 98 -> Minus
arm_3R 26079207..26079314 217..324 100 -> Minus
arm_3R 26079382..26079441 157..216 100 -> Minus
arm_3R 26079501..26079533 124..156 100 -> Minus
arm_3R 26079595..26079681 37..123 100 -> Minus

BO14924.complete Sequence

574 bp assembled on 2008-08-15

GenBank Submission: FJ633279

> BO14924.complete
GAAGTTATCAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCA
TCGTTTTGATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCC
CTGATGGGAGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCA
TCAACTGGAAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAA
CCACTTTGAACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCT
AACGCCCTTACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGC
CACCAATCTCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAG
ATTTGGCTAATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCT
CAGGCTCGCAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGG
AGCCGTGAGTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTT
ATATAAAGCAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACC
AACCTCGCAAGCTTTCTAGACCAT

BO14924.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 543 CG18404-PA 1..540 17..556 2700 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-RA 607 CG18404-RA 9..550 15..556 2710 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30253190..30253425 15..250 1180 100 Plus
3R 32079331 3R 30253485..30253592 251..358 540 100 Plus
3R 32079331 3R 30253873..30253959 452..538 435 100 Plus
3R 32079331 3R 30253660..30253719 359..418 300 100 Plus
3R 32079331 3R 30253774..30253812 414..452 180 97.4 Plus
Blast to na_te.dros performed on 2014-11-27 06:59:50 has no hits.

BO14924.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:01 Download gff for BO14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 4..561 9..565 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:50 Download gff for BO14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 11..550 17..558 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:35 Download gff for BO14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 11..550 17..558 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:18 Download gff for BO14924.complete
Subject Subject Range Query Range Percent Splice Strand
CG18404-RA 11..550 17..558 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:18 Download gff for BO14924.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30253192..30253425 17..250 100 -> Plus
3R 30253485..30253592 251..358 100 -> Plus
3R 30253660..30253719 359..418 100 -> Plus
3R 30253779..30253811 419..451 100 -> Plus
3R 30253873..30253959 452..538 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:50 Download gff for BO14924.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26078914..26079147 17..250 100 -> Plus
arm_3R 26079207..26079314 251..358 100 -> Plus
arm_3R 26079382..26079441 359..418 100 -> Plus
arm_3R 26079501..26079533 419..451 100 -> Plus
arm_3R 26079595..26079681 452..538 100 -> Plus

BO14924.pep Sequence

Translation from 16 to 574

> BO14924.pep
MQSFTILTLFTIVLMVQNSRAGTLSIGSLMGDVSQVAVAGEKVIHQLENA
VASSQSDFVQPTTLNILSDMGNALGDLANALTSLRVDNDYMQPEATNLLG
NVLGGVGTGLGDLANAITSLSVQMTNAPQARSLSSNGASIIAKGGAVSAK
TIAAAADAAAPYIKQLNAGLGDLANALTNLASFLDH

BO14924.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18404-PA 180 CG18404-PA 1..180 1..180 867 100 Plus