Clone Sequence Records
BO14924.3prime Sequence
572 bp (571 high quality bases) assembled on 2006-05-29
> BO14924.3prime
ATGGTCTAGAAAGCTTGCGAGGTTGGTGAGGGCATTAGCCAGATCGCCTA
GGCCAGCATTTAGCTGCTTTATATAAGGGGCAGCTGCATCTGCAGCAGCG
GCAATAGTCTTCGCACTCACGGCTCCTCCTTTGGCTATAATAGAAGCACC
ATTGGACGAAAGACTGCGAGCCTGAGGTGCGTTCGTCATCTGAACACTAA
GACTGGTAATGGCATTAGCCAAATCTCCAAGACCAGTGCCCACTCCACCC
AGAACATTGCCCAAGAGATTGGTGGCCTCGGGTTGCATATAATCGTTATC
CACTCTTAAACTAGTAAGGGCGTTAGCCAGATCACCCAAGGCGTTTCCCA
TGTCGCTTAGAATGTTCAAAGTGGTTGGCTGGACAAAATCCGATTGAGAG
CTGGCCACAGCGTTTTCCAGTTGATGGATGACCTTCTCCCCAGCAACAGC
CACTTGGGACACATCTCCCATCAGGGACCCAATGCTGAGAGTTCCAGCTC
TTGAATTTTGGACCATCAAAACGATGGTGAAAAGGGTTAGAATTGTAAAA
GACTGCATGTCGACTGATAACT
BO14924.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-PA | 543 | CG18404-RA | 1..540 | 558..19 | 2700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:17:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 607 | CG18404-RA | 9..550 | 560..19 | 2710 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30253190..30253425 | 560..325 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 30253485..30253592 | 324..217 | 540 | 100 | Minus |
3R | 32079331 | 3R | 30253873..30253959 | 123..37 | 435 | 100 | Minus |
3R | 32079331 | 3R | 30253660..30253719 | 216..157 | 300 | 100 | Minus |
3R | 32079331 | 3R | 30253774..30253812 | 161..123 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:17:42 has no hits.
BO14924.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:19 Download gff for
BO14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-PA | 1..543 | 16..558 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:18 Download gff for
BO14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-PA | 1..543 | 16..558 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:34 Download gff for
BO14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..561 | 10..566 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:53:21 Download gff for
BO14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..561 | 10..566 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:53:21 Download gff for
BO14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30253185..30253425 | 325..566 | 98 | -> | Minus |
3R | 30253485..30253592 | 217..324 | 100 | -> | Minus |
3R | 30253660..30253719 | 157..216 | 100 | -> | Minus |
3R | 30253779..30253811 | 124..156 | 100 | -> | Minus |
3R | 30253873..30253959 | 37..123 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:34 Download gff for
BO14924.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26078907..26079147 | 325..566 | 98 | -> | Minus |
arm_3R | 26079207..26079314 | 217..324 | 100 | -> | Minus |
arm_3R | 26079382..26079441 | 157..216 | 100 | -> | Minus |
arm_3R | 26079501..26079533 | 124..156 | 100 | -> | Minus |
arm_3R | 26079595..26079681 | 37..123 | 100 | -> | Minus |
BO14924.complete Sequence
574 bp assembled on 2008-08-15
GenBank Submission: FJ633279
> BO14924.complete
GAAGTTATCAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCA
TCGTTTTGATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCC
CTGATGGGAGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCA
TCAACTGGAAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAA
CCACTTTGAACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCT
AACGCCCTTACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGC
CACCAATCTCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAG
ATTTGGCTAATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCT
CAGGCTCGCAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGG
AGCCGTGAGTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTT
ATATAAAGCAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACC
AACCTCGCAAGCTTTCTAGACCAT
BO14924.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 543 | CG18404-PA | 1..540 | 17..556 | 2700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:59:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-RA | 607 | CG18404-RA | 9..550 | 15..556 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:59:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30253190..30253425 | 15..250 | 1180 | 100 | Plus |
3R | 32079331 | 3R | 30253485..30253592 | 251..358 | 540 | 100 | Plus |
3R | 32079331 | 3R | 30253873..30253959 | 452..538 | 435 | 100 | Plus |
3R | 32079331 | 3R | 30253660..30253719 | 359..418 | 300 | 100 | Plus |
3R | 32079331 | 3R | 30253774..30253812 | 414..452 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:59:50 has no hits.
BO14924.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:46:01 Download gff for
BO14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 4..561 | 9..565 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:50 Download gff for
BO14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 11..550 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:11:35 Download gff for
BO14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 11..550 | 17..558 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:18 Download gff for
BO14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18404-RA | 11..550 | 17..558 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:18 Download gff for
BO14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30253192..30253425 | 17..250 | 100 | -> | Plus |
3R | 30253485..30253592 | 251..358 | 100 | -> | Plus |
3R | 30253660..30253719 | 359..418 | 100 | -> | Plus |
3R | 30253779..30253811 | 419..451 | 100 | -> | Plus |
3R | 30253873..30253959 | 452..538 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:50 Download gff for
BO14924.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26078914..26079147 | 17..250 | 100 | -> | Plus |
arm_3R | 26079207..26079314 | 251..358 | 100 | -> | Plus |
arm_3R | 26079382..26079441 | 359..418 | 100 | -> | Plus |
arm_3R | 26079501..26079533 | 419..451 | 100 | -> | Plus |
arm_3R | 26079595..26079681 | 452..538 | 100 | -> | Plus |
BO14924.pep Sequence
Translation from 16 to 574
> BO14924.pep
MQSFTILTLFTIVLMVQNSRAGTLSIGSLMGDVSQVAVAGEKVIHQLENA
VASSQSDFVQPTTLNILSDMGNALGDLANALTSLRVDNDYMQPEATNLLG
NVLGGVGTGLGDLANAITSLSVQMTNAPQARSLSSNGASIIAKGGAVSAK
TIAAAADAAAPYIKQLNAGLGDLANALTNLASFLDH
BO14924.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:21:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18404-PA | 180 | CG18404-PA | 1..180 | 1..180 | 867 | 100 | Plus |