Clone Sequence Records
BO14926.3prime Sequence
911 bp (831 high quality bases) assembled on 2006-05-29
> BO14926.3prime
ATGGTCTAGAAAGCTTGCATCAATTTCGAGGGAACGTAGACCTTCTGTGA
CTCCGGAATCACTTGACTTTCGTTGGCCATTCTTTTTGATTTTGTTTATT
TGCCAGTTTTCCGTATCCATCAGATAATCCCTCTGCTCCTTGAGCAACTG
CATCCACTGGAGCTTCAGGTCGGACATCTTGCCCGCCTCCCCGCCGTATT
CCTCCGGCAACATGGATCGCGGGAAGTGCCGATATGGAGTGTCCGCATTT
GGCAAATGGAAATGGATTAGCTTGAACACCTCTCCCTTGATGAACGGCTT
GACCACGGCCATCACCTTGTCCACATACGACGGGCAGTTGAGCACGTGGA
TCTCCTTGAGCCGTACGGGATGTGCCTCCTGGACGAACTTCATGTAGACA
CGCAGGGCGCCCAGTGCGGTTTTGGTCAGGTGGCGCAGCGTATAGCCAGC
CATGTCGAAAACTGGTATCTCGCCGTCCGACAAACGCTCCTCGTTCTCCG
TCGCAAATCGACAGTCGGCCACCATGAAAAAGACCTTGATGGCAGCCGTA
AAGTTGAACTTGTCCGCATCGAAGTCGATGAGGCGGTAAAAGAGCAGCTT
GTTGTTCTCCGGGGTCAAGCCGGGCAACGGCACCAGATCTGCGACTTGCA
GTAGCTGCTGGGAACTGGCATCCAACGGATCGCGATCGATGAAGATGTGT
GCATGTTTGTTACGCAGTCCGTAATTCAGTTCCAAGAGTCGCTGGGCGGC
GGATAGATCACCCCGCGTCGTGTGCAGAAAGCGGCGCAGAAGCAATCGGG
ATATATTTTGCGGCAACTGTGGCTGCGCCTGCAGCCAATCCTGCAAATCC
GAAATCCTTGTGGTCATCAGCTGATCCTCCGCTTTCTCATTTAGGTGGAC
CATGTCGACTG
BO14926.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-PA | 888 | CG3823-RA | 1..885 | 903..19 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 15:48:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 1282 | CG3823-RA | 142..1031 | 908..19 | 4435 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 15:48:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6305864..6306294 | 560..130 | 2155 | 100 | Minus |
X | 23542271 | X | 6304717..6304876 | 800..641 | 800 | 100 | Minus |
X | 23542271 | X | 6306381..6306494 | 132..19 | 570 | 100 | Minus |
X | 23542271 | X | 6304116..6304223 | 908..801 | 525 | 99.1 | Minus |
X | 23542271 | X | 6305684..6305765 | 640..559 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 15:48:56 has no hits.
BO14926.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:22 Download gff for
BO14926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-PA | 1..888 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:23 Download gff for
BO14926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-PA | 1..888 | 18..903 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:31:45 Download gff for
BO14926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 140..1031 | 19..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:33 Download gff for
BO14926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 140..1031 | 19..911 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:33 Download gff for
BO14926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6304114..6304223 | 801..911 | 97 | -> | Minus |
X | 6304717..6304876 | 641..800 | 100 | -> | Minus |
X | 6305684..6305765 | 559..640 | 100 | -> | Minus |
X | 6305866..6306293 | 131..558 | 100 | -> | Minus |
X | 6306383..6306494 | 19..130 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:31:45 Download gff for
BO14926.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6198147..6198256 | 801..911 | 97 | -> | Minus |
arm_X | 6198750..6198909 | 641..800 | 100 | -> | Minus |
arm_X | 6199717..6199798 | 559..640 | 100 | -> | Minus |
arm_X | 6199899..6200326 | 131..558 | 100 | -> | Minus |
arm_X | 6200416..6200527 | 19..130 | 100 | | Minus |
BO14926.5prime Sequence
922 bp (805 high quality bases) assembled on 2006-05-29
> BO14926.5prime
GAAGTTATCAGTCGACATGGTCCACCTAAATGAGAAAGCGGAGGATCAGC
TGATGACCACAAGGATTTCGGATTTGCAGGATTGGCTGCAGGCGCAGCCA
CAGTTGCCGCAAAATATATCCCGATTGCTTCTGCGCCGCTTTCTGCACAC
GACGCGGGGTGATCTATCCGCCGCCCAGCGACTCTTGGAACTGAATTACG
GACTGCGTAACAAACATGCACACATCTTCATCGATCGCGATCCGTTGGAT
GCCAGTTCCCAGCAGCTACTGCAAGTCGCAGATCTGGTGCCGTTGCCCGG
CTTGACCCCGGAGAACAACAAGCTGCTCTTTTACCGCCTCATCGACTTCG
ATGCGGACAAGTTCAACTTTACGGCTGCCATCAAGGTCTTTTTCATGGTG
GCCGACTGTCGATTTGCGACGGAGAACGAGGAGCGTTTGTCGGACGGCGA
GATACCAGTTTTCGACATGGCTGGCTATACGCTGCGCCACCTGACCAAAA
CCGCACTGGGCGCCCTGCGTGTCTACATGAAGTTCGTCCAGGAGGCACAT
CCCGTACGGCTCAAGGAGATCCACGTGCTCAACTGCCCGTCGTATGTGGA
CAAGGTGATGGCCGTGGTCAAGCCGTTCATCAAGGGAGAGGTGTTCAAGC
TAATCCATTTCCATTTGCCAAATGCGGACACTCCATATCGGCACTTCCCG
CGATCCATGTTGCCGGAGGAATACGGCGGGGAGGCGGGCAAGATGTCCGA
CCTGAAGCTCCAGTGGATGCAGTTGCTCAAGGAGCAGAGGGATTATCTGA
TGGATACGGGAAACTGGCAAATAACAAAATCAAAAGAATGGCCAACGAAA
GTCAAGTGATTCCGGAGTCACAGAAAGTCTACGTTCCCTCGAATTGATGC
AAGCTTCTAGACCATTCGTTTG
BO14926.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-PA | 888 | CG3823-RA | 1..808 | 17..824 | 4015 | 99.8 | Plus |
CG3823-PA | 888 | CG3823-RA | 818..879 | 832..893 | 285 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 1282 | CG3823-RA | 142..1031 | 12..898 | 4330 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6305864..6306294 | 360..790 | 2155 | 100 | Plus |
X | 23542271 | X | 6304717..6304876 | 120..279 | 800 | 100 | Plus |
X | 23542271 | X | 6304116..6304223 | 12..119 | 525 | 99.1 | Plus |
X | 23542271 | X | 6305684..6305765 | 280..361 | 410 | 100 | Plus |
X | 23542271 | X | 6306381..6306488 | 788..893 | 410 | 96.3 | Plus |
Blast to na_te.dros performed on 2015-02-02 08:11:05 has no hits.
BO14926.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:23 Download gff for
BO14926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-PA | 1..888 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:24 Download gff for
BO14926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-PA | 1..888 | 17..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:54 Download gff for
BO14926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 142..1031 | 12..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:18:13 Download gff for
BO14926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 142..1031 | 12..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:18:13 Download gff for
BO14926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6304116..6304223 | 12..119 | 99 | -> | Plus |
X | 6304717..6304876 | 120..279 | 100 | -> | Plus |
X | 6305684..6305765 | 280..361 | 100 | -> | Plus |
X | 6305866..6306293 | 362..789 | 100 | -> | Plus |
X | 6306383..6306494 | 790..898 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:54 Download gff for
BO14926.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6200416..6200527 | 790..898 | 95 | | Plus |
arm_X | 6199899..6200326 | 362..789 | 100 | -> | Plus |
arm_X | 6198149..6198256 | 12..119 | 99 | -> | Plus |
arm_X | 6198750..6198909 | 120..279 | 100 | -> | Plus |
arm_X | 6199717..6199798 | 280..361 | 100 | -> | Plus |
BO14926.complete Sequence
919 bp (919 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633281
> BO14926.complete
GAAGTTATCAGTCGACATGGTCCACCTAAATGAGAAAGCGGAGGATCAGC
TGATGACCACAAGGATTTCGGATTTGCAGGATTGGCTGCAGGCGCAGCCA
CAGTTGCCGCAAAATATATCCCGATTGCTTCTGCGCCGCTTTCTGCACAC
GACGCGGGGTGATCTATCCGCCGCCCAGCGACTCTTGGAACTGAATTACG
GACTGCGTAACAAACATGCACACATCTTCATCGATCGCGATCCGTTGGAT
GCCAGTTCCCAGCAGCTACTGCAAGTCGCAGATCTGGTGCCGTTGCCCGG
CTTGACCCCGGAGAACAACAAGCTGCTCTTTTACCGCCTCATCGACTTCG
ATGCGGACAAGTTCAACTTTACGGCTGCCATCAAGGTCTTTTTCATGGTG
GCCGACTGTCGATTTGCGACGGAGAACGAGGAGCGTTTGTCGGACGGCGA
GATACCAGTTTTCGACATGGCTGGCTATACGCTGCGCCACCTGACCAAAA
CCGCACTGGGCGCCCTGCGTGTCTACATGAAGTTCGTCCAGGAGGCACAT
CCCGTACGGCTCAAGGAGATCCACGTGCTCAACTGCCCGTCGTATGTGGA
CAAGGTGATGGCCGTGGTCAAGCCGTTCATCAAGGGAGAGGTGTTCAAGC
TAATCCATTTCCATTTGCCAAATGCGGACACTCCATATCGGCACTTCCCG
CGATCCATGTTGCCGGAGGAATACGGCGGGGAGGCGGGCAAGATGTCCGA
CCTGAAGCTCCAGTGGATGCAGTTGCTCAAGGAGCAGAGGGATTATCTGA
TGGATACGGAAAACTGGCAAATAAACAAAATCAAAAAGAATGGCCAACGA
AAGTCAAGTGATTCCGGAGTCACAGAAGGTCTACGTTCCCTCGAAATTGA
TGCAAGCTTTCTAGACCAT
BO14926.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:22:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 888 | CG3823-PA | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-RA | 1282 | CG3823-RA | 142..1031 | 12..901 | 4435 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:22:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6305864..6306294 | 360..790 | 2155 | 100 | Plus |
X | 23542271 | X | 6304717..6304876 | 120..279 | 800 | 100 | Plus |
X | 23542271 | X | 6306381..6306494 | 788..901 | 570 | 100 | Plus |
X | 23542271 | X | 6304116..6304223 | 12..119 | 525 | 99.1 | Plus |
X | 23542271 | X | 6305684..6305765 | 280..361 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:22:30 has no hits.
BO14926.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:03 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 1..888 | 17..902 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:39 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 127..1016 | 12..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:55:55 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 147..1031 | 17..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:03 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 127..1016 | 12..901 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:59:06 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3823-RA | 147..1031 | 17..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:59:06 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6304717..6304876 | 120..279 | 100 | -> | Plus |
X | 6305684..6305765 | 280..361 | 100 | -> | Plus |
X | 6304121..6304223 | 17..119 | 100 | -> | Plus |
X | 6305866..6306293 | 362..789 | 100 | -> | Plus |
X | 6306383..6306494 | 790..903 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:55:55 Download gff for
BO14926.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6198154..6198256 | 17..119 | 100 | -> | Plus |
arm_X | 6198750..6198909 | 120..279 | 100 | -> | Plus |
arm_X | 6199717..6199798 | 280..361 | 100 | -> | Plus |
arm_X | 6199899..6200326 | 362..789 | 100 | -> | Plus |
arm_X | 6200416..6200527 | 790..903 | 98 | | Plus |
BO14926.pep Sequence
Translation from 16 to 919
> BO14926.pep
MVHLNEKAEDQLMTTRISDLQDWLQAQPQLPQNISRLLLRRFLHTTRGDL
SAAQRLLELNYGLRNKHAHIFIDRDPLDASSQQLLQVADLVPLPGLTPEN
NKLLFYRLIDFDADKFNFTAAIKVFFMVADCRFATENEERLSDGEIPVFD
MAGYTLRHLTKTALGALRVYMKFVQEAHPVRLKEIHVLNCPSYVDKVMAV
VKPFIKGEVFKLIHFHLPNADTPYRHFPRSMLPEEYGGEAGKMSDLKLQW
MQLLKEQRDYLMDTENWQINKIKKNGQRKSSDSGVTEGLRSLEIDASFLD
H
BO14926.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3823-PA | 295 | CG3823-PA | 1..295 | 1..295 | 1536 | 100 | Plus |
CG3191-PC | 309 | CG3191-PC | 38..302 | 17..277 | 684 | 46.8 | Plus |
CG3191-PA | 309 | CG3191-PA | 38..302 | 17..277 | 684 | 46.8 | Plus |
CG3091-PC | 303 | CG3091-PC | 25..292 | 16..269 | 589 | 39.9 | Plus |
CG3091-PA | 303 | CG3091-PA | 25..292 | 16..269 | 589 | 39.9 | Plus |