Clone Sequence Records
BO14933.3prime Sequence
894 bp (863 high quality bases) assembled on 2006-05-29
> BO14933.3prime
ATGGTCTAGAAAGCTTGCCACCCGATTGTCCGGCCAGACAATGCCCTCGA
TAAAGTCCAGATAGGACGAGACACGCGTATAGAGTCCCGGTGTGACGGTG
GCGCATCCGAATCCCGACGAGATGACGCCCATGATGGTGTACATGCCGTC
CTCCACGTTGAGCTCATGAATGAGCGGCCCACCGGAGTCGCCCTTGCATG
CGTCGGCGATGAGCTTTTGATCAATGGCGCACAGCAACGAATCGATCACG
CCCTGCTTGAGCAACCTTATGGAACCGGGCTGCTCCGCATAGGATATATT
GCATTGGTCCAGAGGCACCAGCTCCAGACCAGCGCGCAACAGGATCTTAG
ATCGCGCCCGAGTGGTTACATTTAGGACGCCCCAACCGGCGACAAAGAAC
TTGGAGTTCGATGGCGGATCGGTGGCATCCGTATGGAGACAAGCGGGCCG
GATGTTATCCGTCTCGACGACATCACGTTCCAGTTCCAAAATGGCGATAT
CGTTGTACTTATTGCCCACATACTGCGGATGGATCTTAACGCTTCGTATG
ACGATATCCTGGTAGGAATGGTCTGGATTTTCAATGTTCACAGCTCCCAA
GCGAACAAAGGCCGGCGTATTGGCATCGGTGTTGACACAATGTGCGGCGG
TCAGGACGAAGCGACTGGCGATTAGCGATCCGCCGCATCGGAAATCGGTG
CCAAAAGTGATGTAACCAATGGCCGCCATATGGGGATATACACCCGGATC
AACCGGATAACCGCCCACGATGTGTATGACCAATTGATTGCCGCTCCTCT
GCTGTTTTCGCTCGCGAATCTTCTTGCAGGCTGCCACTGCTGGGCGATCA
CCGCTTCCGAACGTGGGCACATCGACACGACCACTGGTCATTGG
BO14933.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6367-PA | 1185 | psh-RA | 307..1182 | 894..19 | 4380 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psh-RA | 1645 | CG6367-RA | 605..1480 | 894..19 | 4380 | 100 | Minus |
Hayan-RD | 2290 | CG6361-RD | 1518..2238 | 745..31 | 485 | 72.6 | Minus |
Hayan-RB | 2408 | CG6361-RB | 1518..2238 | 745..31 | 485 | 72.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18484652..18484995 | 19..362 | 1720 | 100 | Plus |
X | 23542271 | X | 18485296..18485581 | 547..832 | 1430 | 100 | Plus |
X | 23542271 | X | 18485054..18485237 | 363..546 | 920 | 100 | Plus |
X | 23542271 | X | 18485645..18485708 | 831..894 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:25:02 has no hits.
BO14933.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:32 Download gff for
BO14933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-PA | 307..1185 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:36 Download gff for
BO14933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6367-PA | 307..1185 | 15..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:30 Download gff for
BO14933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 605..1487 | 11..894 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:45 Download gff for
BO14933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 605..1487 | 11..894 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:45 Download gff for
BO14933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18485054..18485237 | 363..546 | 100 | <- | Plus |
X | 18485296..18485579 | 547..830 | 100 | <- | Plus |
X | 18485645..18485708 | 831..894 | 100 | | Plus |
X | 18484645..18484995 | 11..362 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:30 Download gff for
BO14933.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18378678..18379028 | 11..362 | 99 | <- | Plus |
arm_X | 18379087..18379270 | 363..546 | 100 | <- | Plus |
arm_X | 18379329..18379612 | 547..830 | 100 | <- | Plus |
arm_X | 18379678..18379741 | 831..894 | 100 | | Plus |
BO14933.5prime Sequence
932 bp (787 high quality bases) assembled on 2006-05-29
> BO14933.5prime
GAAGTTATCAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTT
TTGTGCTCATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGG
GCCTGCAAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGA
TTGTGAGCCCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCA
ACGATGTGCCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGT
CCCACCAAGCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAG
CTCCACCACAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGC
CCACGTTCGGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATT
CGCGAGCGAAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGT
GGGCGGTTATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTG
GTTACATCACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCC
AGTCGCTTCGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATAC
GCCGGCCTTTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATT
CCTACCAGGATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTG
GGCAATAAGTACAACGATATCGCCATTTTGGAACTGGAACGTGATGTCGT
CGAGACGGATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATC
CGCCATCGAACTCCAAGTTCTTTGTCGCCGGTTGGGGCGTCCTAAATGTA
ACCACTCGGGCGCGATCTAAGATCCTGTTGCGCGCTGGTCTGGAGCTGGT
GCCTCTGGACCAATGCAATATATCCTATGCGG
BO14933.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6367-PA | 1185 | psh-RA | 1..916 | 17..932 | 4580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psh-RA | 1645 | CG6367-RA | 299..1214 | 17..932 | 4580 | 100 | Plus |
Hayan-RD | 2290 | CG6361-RD | 1518..1984 | 472..932 | 345 | 73.1 | Plus |
Hayan-RB | 2408 | CG6361-RB | 1518..1984 | 472..932 | 345 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:04:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18485296..18485581 | 670..385 | 1430 | 100 | Minus |
X | 23542271 | X | 18485813..18485999 | 276..90 | 935 | 100 | Minus |
X | 23542271 | X | 18485054..18485237 | 854..671 | 920 | 100 | Minus |
X | 23542271 | X | 18485645..18485756 | 386..275 | 560 | 100 | Minus |
X | 23542271 | X | 18484918..18484995 | 932..855 | 390 | 100 | Minus |
X | 23542271 | X | 18486063..18486138 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 11:04:58 has no hits.
BO14933.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:33 Download gff for
BO14933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:37 Download gff for
BO14933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6367-PA | 1..916 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:01 Download gff for
BO14933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 299..1214 | 17..932 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:06 Download gff for
BO14933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 299..1214 | 17..932 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:06 Download gff for
BO14933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18486063..18486138 | 17..92 | 100 | | Minus |
X | 18485813..18485996 | 93..276 | 100 | <- | Minus |
X | 18484918..18484995 | 855..932 | 100 | <- | Minus |
X | 18485054..18485237 | 671..854 | 100 | <- | Minus |
X | 18485296..18485579 | 387..670 | 100 | <- | Minus |
X | 18485645..18485754 | 277..386 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:01 Download gff for
BO14933.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18378951..18379028 | 855..932 | 100 | <- | Minus |
arm_X | 18379087..18379270 | 671..854 | 100 | <- | Minus |
arm_X | 18379329..18379612 | 387..670 | 100 | <- | Minus |
arm_X | 18379678..18379787 | 277..386 | 100 | <- | Minus |
arm_X | 18379846..18380029 | 93..276 | 100 | <- | Minus |
arm_X | 18380096..18380171 | 17..92 | 100 | | Minus |
BO14933.complete Sequence
1216 bp (1216 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633284
> BO14933.complete
GAAGTTATCAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTT
TTGTGCTCATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGG
GCCTGCAAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGA
TTGTGAGCCCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCA
ACGATGTGCCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGT
CCCACCAAGCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAG
CTCCACCACAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGC
CCACGTTCGGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATT
CGCGAGCGAAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGT
GGGCGGTTATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTG
GTTACATCACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCC
AGTCGCTTCGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATAC
GCCGGCCTTTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATT
CCTACCAGGATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTG
GGCAATAAGTACAACGATATCGCCATTTTGGAACTGGAACGTGATGTCGT
CGAGACGGATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATC
CGCCATCGAACTCCAAGTTCTTTGTCGCCGGTTGGGGCGTCCTAAATGTA
ACCACTCGGGCGCGATCTAAGATCCTGTTGCGCGCTGGTCTGGAGCTGGT
GCCTCTGGACCAATGCAATATATCCTATGCGGAGCAGCCCGGTTCCATAA
GGTTGCTCAAGCAGGGCGTGATCGATTCGTTGCTGTGCGCCATTGATCAA
AAGCTCATCGCCGACGCATGCAAGGGCGACTCCGGTGGGCCGCTCATTCA
TGAGCTCAACGTGGAGGACGGCATGTACACCATCATGGGCGTCATCTCGT
CGGGATTCGGATGCGCCACCGTCACACCGGGACTCTATACGCGTGTCTCG
TCCTATCTGGACTTTATCGAGGGCATTGTCTGGCCGGACAATCGGGTGGC
AAGCTTTCTAGACCAT
BO14933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psh-RA | 1185 | CG6367-PA | 1..1182 | 17..1198 | 5910 | 100 | Plus |
Hayan-RD | 1914 | CG6361-PD | 1419..1899 | 706..1186 | 410 | 72.3 | Plus |
Hayan-RB | 1914 | CG6361-PB | 1419..1899 | 706..1186 | 410 | 72.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psh-RA | 1645 | CG6367-RA | 299..1480 | 17..1198 | 5910 | 100 | Plus |
Hayan-RD | 2290 | CG6361-RD | 1758..2238 | 706..1186 | 410 | 72.3 | Plus |
Hayan-RB | 2408 | CG6361-RB | 1758..2238 | 706..1186 | 410 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18484652..18484995 | 1198..855 | 1720 | 100 | Minus |
X | 23542271 | X | 18485296..18485581 | 670..385 | 1430 | 100 | Minus |
X | 23542271 | X | 18485813..18485999 | 276..90 | 935 | 100 | Minus |
X | 23542271 | X | 18485054..18485237 | 854..671 | 920 | 100 | Minus |
X | 23542271 | X | 18485645..18485756 | 386..275 | 560 | 100 | Minus |
X | 23542271 | X | 18486063..18486138 | 92..17 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:29:37 has no hits.
BO14933.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:07 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 1..1185 | 17..1202 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:45 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 299..1487 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:26 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 299..1480 | 17..1200 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:07 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 299..1487 | 17..1206 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:24 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
psh-RA | 299..1480 | 17..1200 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:24 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18484650..18484995 | 855..1200 | 99 | <- | Minus |
X | 18485054..18485237 | 671..854 | 100 | <- | Minus |
X | 18485296..18485579 | 387..670 | 100 | <- | Minus |
X | 18485645..18485754 | 277..386 | 100 | <- | Minus |
X | 18485813..18485996 | 93..276 | 100 | <- | Minus |
X | 18486063..18486138 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:26 Download gff for
BO14933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18378683..18379028 | 855..1200 | 99 | <- | Minus |
arm_X | 18379087..18379270 | 671..854 | 100 | <- | Minus |
arm_X | 18379329..18379612 | 387..670 | 100 | <- | Minus |
arm_X | 18379678..18379787 | 277..386 | 100 | <- | Minus |
arm_X | 18379846..18380029 | 93..276 | 100 | <- | Minus |
arm_X | 18380096..18380171 | 17..92 | 100 | | Minus |
BO14933.pep Sequence
Translation from 16 to 1216
> BO14933.pep
MPLKWSLLLGTFVLISCSSVEAAVTVGRACKVTDTMPGICRTSSDCEPLI
DGYIKSGVLTLNDVPSCGLGAWGEIFCCPTKPCCDNSTITSVSTSSTTST
KAPMTSGRVDVPTFGSGDRPAVAACKKIRERKQQRSGNQLVIHIVGGYPV
DPGVYPHMAAIGYITFGTDFRCGGSLIASRFVLTAAHCVNTDANTPAFVR
LGAVNIENPDHSYQDIVIRSVKIHPQYVGNKYNDIAILELERDVVETDNI
RPACLHTDATDPPSNSKFFVAGWGVLNVTTRARSKILLRAGLELVPLDQC
NISYAEQPGSIRLLKQGVIDSLLCAIDQKLIADACKGDSGGPLIHELNVE
DGMYTIMGVISSGFGCATVTPGLYTRVSSYLDFIEGIVWPDNRVASFLDH
BO14933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
psh-PA | 394 | CG6367-PA | 1..394 | 1..394 | 2082 | 100 | Plus |
Hayan-PA | 378 | CG6361-PA | 11..377 | 8..393 | 1116 | 60.1 | Plus |
Hayan-PD | 637 | CG6361-PD | 339..636 | 87..393 | 954 | 62.8 | Plus |
Hayan-PB | 637 | CG6361-PB | 339..636 | 87..393 | 954 | 62.8 | Plus |
spirit-PD | 393 | CG2056-PD | 107..373 | 119..396 | 421 | 36.7 | Plus |
Hayan-PD | 637 | CG6361-PD | 11..138 | 8..139 | 191 | 40 | Plus |
Hayan-PB | 637 | CG6361-PB | 11..138 | 8..139 | 191 | 40 | Plus |