Clone BO14933 Report

Search the DGRC for BO14933

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptpsh-RA
Protein status:BO14933.pep: validated full length
Sequenced Size:1216

Clone Sequence Records

BO14933.3prime Sequence

894 bp (863 high quality bases) assembled on 2006-05-29

> BO14933.3prime
ATGGTCTAGAAAGCTTGCCACCCGATTGTCCGGCCAGACAATGCCCTCGA
TAAAGTCCAGATAGGACGAGACACGCGTATAGAGTCCCGGTGTGACGGTG
GCGCATCCGAATCCCGACGAGATGACGCCCATGATGGTGTACATGCCGTC
CTCCACGTTGAGCTCATGAATGAGCGGCCCACCGGAGTCGCCCTTGCATG
CGTCGGCGATGAGCTTTTGATCAATGGCGCACAGCAACGAATCGATCACG
CCCTGCTTGAGCAACCTTATGGAACCGGGCTGCTCCGCATAGGATATATT
GCATTGGTCCAGAGGCACCAGCTCCAGACCAGCGCGCAACAGGATCTTAG
ATCGCGCCCGAGTGGTTACATTTAGGACGCCCCAACCGGCGACAAAGAAC
TTGGAGTTCGATGGCGGATCGGTGGCATCCGTATGGAGACAAGCGGGCCG
GATGTTATCCGTCTCGACGACATCACGTTCCAGTTCCAAAATGGCGATAT
CGTTGTACTTATTGCCCACATACTGCGGATGGATCTTAACGCTTCGTATG
ACGATATCCTGGTAGGAATGGTCTGGATTTTCAATGTTCACAGCTCCCAA
GCGAACAAAGGCCGGCGTATTGGCATCGGTGTTGACACAATGTGCGGCGG
TCAGGACGAAGCGACTGGCGATTAGCGATCCGCCGCATCGGAAATCGGTG
CCAAAAGTGATGTAACCAATGGCCGCCATATGGGGATATACACCCGGATC
AACCGGATAACCGCCCACGATGTGTATGACCAATTGATTGCCGCTCCTCT
GCTGTTTTCGCTCGCGAATCTTCTTGCAGGCTGCCACTGCTGGGCGATCA
CCGCTTCCGAACGTGGGCACATCGACACGACCACTGGTCATTGG

BO14933.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6367-PA 1185 psh-RA 307..1182 894..19 4380 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1645 CG6367-RA 605..1480 894..19 4380 100 Minus
Hayan-RD 2290 CG6361-RD 1518..2238 745..31 485 72.6 Minus
Hayan-RB 2408 CG6361-RB 1518..2238 745..31 485 72.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:25:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18484652..18484995 19..362 1720 100 Plus
X 23542271 X 18485296..18485581 547..832 1430 100 Plus
X 23542271 X 18485054..18485237 363..546 920 100 Plus
X 23542271 X 18485645..18485708 831..894 320 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:25:02 has no hits.

BO14933.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:32 Download gff for BO14933.3prime
Subject Subject Range Query Range Percent Splice Strand
psh-PA 307..1185 15..894 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:36 Download gff for BO14933.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6367-PA 307..1185 15..894 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:30 Download gff for BO14933.3prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 605..1487 11..894 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:21:45 Download gff for BO14933.3prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 605..1487 11..894 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:21:45 Download gff for BO14933.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18485054..18485237 363..546 100 <- Plus
X 18485296..18485579 547..830 100 <- Plus
X 18485645..18485708 831..894 100   Plus
X 18484645..18484995 11..362 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:30 Download gff for BO14933.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18378678..18379028 11..362 99 <- Plus
arm_X 18379087..18379270 363..546 100 <- Plus
arm_X 18379329..18379612 547..830 100 <- Plus
arm_X 18379678..18379741 831..894 100   Plus

BO14933.5prime Sequence

932 bp (787 high quality bases) assembled on 2006-05-29

> BO14933.5prime
GAAGTTATCAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTT
TTGTGCTCATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGG
GCCTGCAAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGA
TTGTGAGCCCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCA
ACGATGTGCCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGT
CCCACCAAGCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAG
CTCCACCACAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGC
CCACGTTCGGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATT
CGCGAGCGAAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGT
GGGCGGTTATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTG
GTTACATCACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCC
AGTCGCTTCGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATAC
GCCGGCCTTTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATT
CCTACCAGGATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTG
GGCAATAAGTACAACGATATCGCCATTTTGGAACTGGAACGTGATGTCGT
CGAGACGGATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATC
CGCCATCGAACTCCAAGTTCTTTGTCGCCGGTTGGGGCGTCCTAAATGTA
ACCACTCGGGCGCGATCTAAGATCCTGTTGCGCGCTGGTCTGGAGCTGGT
GCCTCTGGACCAATGCAATATATCCTATGCGG

BO14933.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6367-PA 1185 psh-RA 1..916 17..932 4580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:05:01
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1645 CG6367-RA 299..1214 17..932 4580 100 Plus
Hayan-RD 2290 CG6361-RD 1518..1984 472..932 345 73.1 Plus
Hayan-RB 2408 CG6361-RB 1518..1984 472..932 345 73.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 11:04:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18485296..18485581 670..385 1430 100 Minus
X 23542271 X 18485813..18485999 276..90 935 100 Minus
X 23542271 X 18485054..18485237 854..671 920 100 Minus
X 23542271 X 18485645..18485756 386..275 560 100 Minus
X 23542271 X 18484918..18484995 932..855 390 100 Minus
X 23542271 X 18486063..18486138 92..17 380 100 Minus
Blast to na_te.dros performed on 2015-02-09 11:04:58 has no hits.

BO14933.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:33 Download gff for BO14933.5prime
Subject Subject Range Query Range Percent Splice Strand
psh-PA 1..916 17..932 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:37 Download gff for BO14933.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6367-PA 1..916 17..932 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 16:41:01 Download gff for BO14933.5prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1214 17..932 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:06 Download gff for BO14933.5prime
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1214 17..932 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:06 Download gff for BO14933.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18486063..18486138 17..92 100   Minus
X 18485813..18485996 93..276 100 <- Minus
X 18484918..18484995 855..932 100 <- Minus
X 18485054..18485237 671..854 100 <- Minus
X 18485296..18485579 387..670 100 <- Minus
X 18485645..18485754 277..386 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 16:41:01 Download gff for BO14933.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18378951..18379028 855..932 100 <- Minus
arm_X 18379087..18379270 671..854 100 <- Minus
arm_X 18379329..18379612 387..670 100 <- Minus
arm_X 18379678..18379787 277..386 100 <- Minus
arm_X 18379846..18380029 93..276 100 <- Minus
arm_X 18380096..18380171 17..92 100   Minus

BO14933.complete Sequence

1216 bp (1216 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633284

> BO14933.complete
GAAGTTATCAGTCGACATGCCATTGAAGTGGTCCCTGCTACTCGGCACTT
TTGTGCTCATCAGCTGCTCCTCCGTGGAAGCAGCCGTCACAGTGGGTCGG
GCCTGCAAGGTGACGGATACCATGCCCGGTATCTGCAGAACATCCTCCGA
TTGTGAGCCCCTAATCGATGGCTACATCAAGTCGGGAGTCCTGACGCTCA
ACGATGTGCCCAGCTGTGGCCTCGGCGCTTGGGGTGAGATCTTCTGCTGT
CCCACCAAGCCGTGCTGTGACAATAGTACCATAACAAGCGTTTCCACAAG
CTCCACCACAAGCACAAAAGCTCCAATGACCAGTGGTCGTGTCGATGTGC
CCACGTTCGGAAGCGGTGATCGCCCAGCAGTGGCAGCCTGCAAGAAGATT
CGCGAGCGAAAACAGCAGAGGAGCGGCAATCAATTGGTCATACACATCGT
GGGCGGTTATCCGGTTGATCCGGGTGTATATCCCCATATGGCGGCCATTG
GTTACATCACTTTTGGCACCGATTTCCGATGCGGCGGATCGCTAATCGCC
AGTCGCTTCGTCCTGACCGCCGCACATTGTGTCAACACCGATGCCAATAC
GCCGGCCTTTGTTCGCTTGGGAGCTGTGAACATTGAAAATCCAGACCATT
CCTACCAGGATATCGTCATACGAAGCGTTAAGATCCATCCGCAGTATGTG
GGCAATAAGTACAACGATATCGCCATTTTGGAACTGGAACGTGATGTCGT
CGAGACGGATAACATCCGGCCCGCTTGTCTCCATACGGATGCCACCGATC
CGCCATCGAACTCCAAGTTCTTTGTCGCCGGTTGGGGCGTCCTAAATGTA
ACCACTCGGGCGCGATCTAAGATCCTGTTGCGCGCTGGTCTGGAGCTGGT
GCCTCTGGACCAATGCAATATATCCTATGCGGAGCAGCCCGGTTCCATAA
GGTTGCTCAAGCAGGGCGTGATCGATTCGTTGCTGTGCGCCATTGATCAA
AAGCTCATCGCCGACGCATGCAAGGGCGACTCCGGTGGGCCGCTCATTCA
TGAGCTCAACGTGGAGGACGGCATGTACACCATCATGGGCGTCATCTCGT
CGGGATTCGGATGCGCCACCGTCACACCGGGACTCTATACGCGTGTCTCG
TCCTATCTGGACTTTATCGAGGGCATTGTCTGGCCGGACAATCGGGTGGC
AAGCTTTCTAGACCAT

BO14933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1185 CG6367-PA 1..1182 17..1198 5910 100 Plus
Hayan-RD 1914 CG6361-PD 1419..1899 706..1186 410 72.3 Plus
Hayan-RB 1914 CG6361-PB 1419..1899 706..1186 410 72.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
psh-RA 1645 CG6367-RA 299..1480 17..1198 5910 100 Plus
Hayan-RD 2290 CG6361-RD 1758..2238 706..1186 410 72.3 Plus
Hayan-RB 2408 CG6361-RB 1758..2238 706..1186 410 72.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:29:35
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18484652..18484995 1198..855 1720 100 Minus
X 23542271 X 18485296..18485581 670..385 1430 100 Minus
X 23542271 X 18485813..18485999 276..90 935 100 Minus
X 23542271 X 18485054..18485237 854..671 920 100 Minus
X 23542271 X 18485645..18485756 386..275 560 100 Minus
X 23542271 X 18486063..18486138 92..17 380 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:29:37 has no hits.

BO14933.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:07 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 1..1185 17..1202 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:45 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1487 17..1206 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:08:26 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1480 17..1200 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:07 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1487 17..1206 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:22:24 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
psh-RA 299..1480 17..1200 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:22:24 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
X 18484650..18484995 855..1200 99 <- Minus
X 18485054..18485237 671..854 100 <- Minus
X 18485296..18485579 387..670 100 <- Minus
X 18485645..18485754 277..386 100 <- Minus
X 18485813..18485996 93..276 100 <- Minus
X 18486063..18486138 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:08:26 Download gff for BO14933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18378683..18379028 855..1200 99 <- Minus
arm_X 18379087..18379270 671..854 100 <- Minus
arm_X 18379329..18379612 387..670 100 <- Minus
arm_X 18379678..18379787 277..386 100 <- Minus
arm_X 18379846..18380029 93..276 100 <- Minus
arm_X 18380096..18380171 17..92 100   Minus

BO14933.pep Sequence

Translation from 16 to 1216

> BO14933.pep
MPLKWSLLLGTFVLISCSSVEAAVTVGRACKVTDTMPGICRTSSDCEPLI
DGYIKSGVLTLNDVPSCGLGAWGEIFCCPTKPCCDNSTITSVSTSSTTST
KAPMTSGRVDVPTFGSGDRPAVAACKKIRERKQQRSGNQLVIHIVGGYPV
DPGVYPHMAAIGYITFGTDFRCGGSLIASRFVLTAAHCVNTDANTPAFVR
LGAVNIENPDHSYQDIVIRSVKIHPQYVGNKYNDIAILELERDVVETDNI
RPACLHTDATDPPSNSKFFVAGWGVLNVTTRARSKILLRAGLELVPLDQC
NISYAEQPGSIRLLKQGVIDSLLCAIDQKLIADACKGDSGGPLIHELNVE
DGMYTIMGVISSGFGCATVTPGLYTRVSSYLDFIEGIVWPDNRVASFLDH

BO14933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
psh-PA 394 CG6367-PA 1..394 1..394 2082 100 Plus
Hayan-PA 378 CG6361-PA 11..377 8..393 1116 60.1 Plus
Hayan-PD 637 CG6361-PD 339..636 87..393 954 62.8 Plus
Hayan-PB 637 CG6361-PB 339..636 87..393 954 62.8 Plus
spirit-PD 393 CG2056-PD 107..373 119..396 421 36.7 Plus
Hayan-PD 637 CG6361-PD 11..138 8..139 191 40 Plus
Hayan-PB 637 CG6361-PB 11..138 8..139 191 40 Plus