Clone BO14936 Report

Search the DGRC for BO14936

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptCG5778-RA
Protein status:BO14936.pep: validated full length
Sequenced Size:385

Clone Sequence Records

BO14936.5prime Sequence

383 bp (382 high quality bases) assembled on 2006-05-29

> BO14936.5prime
GAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTT
TTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGC
TACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGG
CAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTG
GAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTA
TATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGG
AGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTA
CGCAGATTATAAGCGGCGCAAGCTTTCTAGACC

BO14936.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-PA 354 CG5778-RA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-RC 503 CG5778-RC 75..425 17..367 1755 100 Plus
CG5778-RA 657 CG5778-RA 75..425 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22085606..22085865 367..108 1300 100 Minus
3R 32079331 3R 22086229..22086323 111..17 475 100 Minus
Blast to na_te.dros performed on 2015-02-12 05:19:39 has no hits.

BO14936.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:38 Download gff for BO14936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-PA 1..354 17..370 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:43 Download gff for BO14936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-PA 1..354 17..370 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:46 Download gff for BO14936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 9..375 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:26 Download gff for BO14936.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 9..375 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:26 Download gff for BO14936.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22085599..22085865 108..375 98 <- Minus
3R 22086233..22086331 9..107 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:46 Download gff for BO14936.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17911321..17911587 108..375 98 <- Minus
arm_3R 17911955..17912053 9..107 97   Minus

BO14936.3prime Sequence

383 bp (382 high quality bases) assembled on 2006-05-29

> BO14936.3prime
ATGGTCTAGAAAGCTTGCGCCGCTTATAATCTGCGTAAGACCGCCATCAT
CGTAGCCACCTCCACCGCCGCCTCCGTAGCCTCCTCCACCTCCTCCTCCG
CCGTTACCATAGCCGGGTCCAAAGTTGCCCGAATATACTGGACGACGGCC
ACCTCCTCCACCTCCGCCGCCGTTGTAGTATCCTCCACCGCCTCCGCCTG
CGTTGTATCCACCTCCTCCTCCTCGTCCTCCGTTGCCACCTGTGTAGACT
CCAGGTCCTTGGCCTCCGGGTGGATTACAGTCGTAGCAACCGCCACCGAT
GTAAACAGCCGCCTCCGTTAGAGCCAGTGCAAAAAAAGCGATAATCGCAA
ATGCCGTCAAGGTTCTCATGTCGACTGATAACT

BO14936.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-PA 354 CG5778-RA 1..351 369..19 1755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-RC 503 CG5778-RC 75..425 369..19 1755 100 Minus
CG5778-RA 657 CG5778-RA 75..425 369..19 1755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22085606..22085865 19..278 1300 100 Plus
3R 32079331 3R 22086229..22086323 275..369 475 100 Plus
Blast to na_te.dros performed on 2015-02-08 13:05:10 has no hits.

BO14936.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:37 Download gff for BO14936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-PA 1..354 16..369 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:42 Download gff for BO14936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-PA 1..354 16..369 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:59 Download gff for BO14936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 11..377 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:24 Download gff for BO14936.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 11..377 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:24 Download gff for BO14936.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22085599..22085865 11..278 98 <- Plus
3R 22086233..22086331 279..377 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:59 Download gff for BO14936.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17911321..17911587 11..278 98 <- Plus
arm_3R 17911955..17912053 279..377 97   Plus

BO14936.complete Sequence

385 bp (385 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633285

> BO14936.complete
GAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTT
TTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGC
TACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGG
CAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTG
GAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTA
TATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGG
AGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTA
CGCAGATTATAAGCGGCGCAAGCTTTCTAGACCAT

BO14936.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-RC 354 CG5778-PC 1..351 17..367 1755 100 Plus
CG5778-RA 354 CG5778-PA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-RC 503 CG5778-RC 75..425 17..367 1755 100 Plus
CG5778-RA 657 CG5778-RA 75..425 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22085606..22085865 367..108 1300 100 Minus
3R 32079331 3R 22086229..22086323 111..17 475 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:35:24 has no hits.

BO14936.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:10 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
CG5778-RB 1..354 17..370 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:47 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 9..375 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:53 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 75..425 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:10 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 67..432 9..375 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:22 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
CG5778-RA 75..425 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:22 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22085603..22085865 108..369 99 <- Minus
3R 22086233..22086323 17..107 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:53 Download gff for BO14936.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17911955..17912045 17..107 100   Minus
arm_3R 17911325..17911587 108..369 99 <- Minus

BO14936.pep Sequence

Translation from 16 to 385

> BO14936.pep
MRTLTAFAIIAFFALALTEAAVYIGGGCYDCNPPGGQGPGVYTGGNGGRG
GGGGYNAGGGGGGYYNGGGGGGGGRRPVYSGNFGPGYGNGGGGGGGGYGG
GGGGGYDDGGLTQIISGASFLDH

BO14936.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG5778-PC 117 CG5778-PC 1..117 1..117 666 100 Plus
CG5778-PA 117 CG5778-PA 1..117 1..117 666 100 Plus
CG5172-PD 172 CG5172-PD 1..116 1..110 228 45.6 Plus
CG14191-PA 193 CG14191-PA 25..120 25..109 225 50 Plus
CG11458-PA 98 CG11458-PA 3..97 7..110 222 49 Plus
CG5172-PD 172 CG5172-PD 71..164 25..105 204 52.1 Plus
CG5172-PD 172 CG5172-PD 91..172 35..98 145 43.2 Plus