Clone Sequence Records
BO14936.5prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-29
> BO14936.5prime
GAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTT
TTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGC
TACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGG
CAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTG
GAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTA
TATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGG
AGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTA
CGCAGATTATAAGCGGCGCAAGCTTTCTAGACC
BO14936.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-PA | 354 | CG5778-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-RC | 503 | CG5778-RC | 75..425 | 17..367 | 1755 | 100 | Plus |
CG5778-RA | 657 | CG5778-RA | 75..425 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22085606..22085865 | 367..108 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22086229..22086323 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:19:39 has no hits.
BO14936.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:38 Download gff for
BO14936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-PA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:43 Download gff for
BO14936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-PA | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:55:46 Download gff for
BO14936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 67..432 | 9..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:30:26 Download gff for
BO14936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 67..432 | 9..375 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:30:26 Download gff for
BO14936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22085599..22085865 | 108..375 | 98 | <- | Minus |
3R | 22086233..22086331 | 9..107 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:55:46 Download gff for
BO14936.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17911321..17911587 | 108..375 | 98 | <- | Minus |
arm_3R | 17911955..17912053 | 9..107 | 97 | | Minus |
BO14936.3prime Sequence
383 bp (382 high quality bases) assembled on 2006-05-29
> BO14936.3prime
ATGGTCTAGAAAGCTTGCGCCGCTTATAATCTGCGTAAGACCGCCATCAT
CGTAGCCACCTCCACCGCCGCCTCCGTAGCCTCCTCCACCTCCTCCTCCG
CCGTTACCATAGCCGGGTCCAAAGTTGCCCGAATATACTGGACGACGGCC
ACCTCCTCCACCTCCGCCGCCGTTGTAGTATCCTCCACCGCCTCCGCCTG
CGTTGTATCCACCTCCTCCTCCTCGTCCTCCGTTGCCACCTGTGTAGACT
CCAGGTCCTTGGCCTCCGGGTGGATTACAGTCGTAGCAACCGCCACCGAT
GTAAACAGCCGCCTCCGTTAGAGCCAGTGCAAAAAAAGCGATAATCGCAA
ATGCCGTCAAGGTTCTCATGTCGACTGATAACT
BO14936.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-PA | 354 | CG5778-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-RC | 503 | CG5778-RC | 75..425 | 369..19 | 1755 | 100 | Minus |
CG5778-RA | 657 | CG5778-RA | 75..425 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 13:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22085606..22085865 | 19..278 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 22086229..22086323 | 275..369 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 13:05:10 has no hits.
BO14936.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:37 Download gff for
BO14936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-PA | 1..354 | 16..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:42 Download gff for
BO14936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-PA | 1..354 | 16..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:48:59 Download gff for
BO14936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 67..432 | 11..377 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 13:52:24 Download gff for
BO14936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 67..432 | 11..377 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 13:52:24 Download gff for
BO14936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22085599..22085865 | 11..278 | 98 | <- | Plus |
3R | 22086233..22086331 | 279..377 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:48:59 Download gff for
BO14936.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17911321..17911587 | 11..278 | 98 | <- | Plus |
arm_3R | 17911955..17912053 | 279..377 | 97 | | Plus |
BO14936.complete Sequence
385 bp (385 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633285
> BO14936.complete
GAAGTTATCAGTCGACATGAGAACCTTGACGGCATTTGCGATTATCGCTT
TTTTTGCACTGGCTCTAACGGAGGCGGCTGTTTACATCGGTGGCGGTTGC
TACGACTGTAATCCACCCGGAGGCCAAGGACCTGGAGTCTACACAGGTGG
CAACGGAGGACGAGGAGGAGGAGGTGGATACAACGCAGGCGGAGGCGGTG
GAGGATACTACAACGGCGGCGGAGGTGGAGGAGGTGGCCGTCGTCCAGTA
TATTCGGGCAACTTTGGACCCGGCTATGGTAACGGCGGAGGAGGAGGTGG
AGGAGGCTACGGAGGCGGCGGTGGAGGTGGCTACGATGATGGCGGTCTTA
CGCAGATTATAAGCGGCGCAAGCTTTCTAGACCAT
BO14936.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-RC | 354 | CG5778-PC | 1..351 | 17..367 | 1755 | 100 | Plus |
CG5778-RA | 354 | CG5778-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-RC | 503 | CG5778-RC | 75..425 | 17..367 | 1755 | 100 | Plus |
CG5778-RA | 657 | CG5778-RA | 75..425 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22085606..22085865 | 367..108 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22086229..22086323 | 111..17 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:35:24 has no hits.
BO14936.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:10 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RB | 1..354 | 17..370 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:47 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 67..432 | 9..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:53 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 75..425 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:10 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 67..432 | 9..375 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:22 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5778-RA | 75..425 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:22 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22085603..22085865 | 108..369 | 99 | <- | Minus |
3R | 22086233..22086323 | 17..107 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:53 Download gff for
BO14936.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17911955..17912045 | 17..107 | 100 | | Minus |
arm_3R | 17911325..17911587 | 108..369 | 99 | <- | Minus |
BO14936.pep Sequence
Translation from 16 to 385
> BO14936.pep
MRTLTAFAIIAFFALALTEAAVYIGGGCYDCNPPGGQGPGVYTGGNGGRG
GGGGYNAGGGGGGYYNGGGGGGGGRRPVYSGNFGPGYGNGGGGGGGGYGG
GGGGGYDDGGLTQIISGASFLDH
BO14936.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5778-PC | 117 | CG5778-PC | 1..117 | 1..117 | 666 | 100 | Plus |
CG5778-PA | 117 | CG5778-PA | 1..117 | 1..117 | 666 | 100 | Plus |
CG5172-PD | 172 | CG5172-PD | 1..116 | 1..110 | 228 | 45.6 | Plus |
CG14191-PA | 193 | CG14191-PA | 25..120 | 25..109 | 225 | 50 | Plus |
CG11458-PA | 98 | CG11458-PA | 3..97 | 7..110 | 222 | 49 | Plus |
CG5172-PD | 172 | CG5172-PD | 71..164 | 25..105 | 204 | 52.1 | Plus |
CG5172-PD | 172 | CG5172-PD | 91..172 | 35..98 | 145 | 43.2 | Plus |