Clone Sequence Records
BO14939.3prime Sequence
902 bp (756 high quality bases) assembled on 2006-05-29
> BO14939.3prime
ATGGTCTAGAAAGCTTGCGTATATGATGCACTTGGATGCAGGATTCATGG
GTGATCCAATGGGGCACCGAAATTCACTCGCAAATTCAACTGAGTTTCGC
AAAGGTCCGTTTACAAGCAGGCGAGTCCAGGTGTGATTCTGTCGTGCACT
ATAGAGGTATCCTTCCGGAGTCCCTTGCTCATCCCTGGGACGAGCCTCCT
CCAGACTGCAATGCTCTTGGGCATAAGCTAAGAAGAATAGTGCCGTGTTT
GAGTAGTTCAGATCCGGCAGAGTCTCCTTGGTCAGTTTAGTGAAGTCGTT
GTTTGGCTCCTGGAAACCCAGCCATGTGAGATACGCCCGAAAGGCGACAT
TGATGGCTGCGCTGTCCGTGATCAGCTGCGTGGTGGCACTTACATTGGGC
CTCAAATAATTGTCCACCTGGCGGGCAAAGCAATTGCTTCGAATGTGATA
TTGCCAGGCTGTTTGACCATCCCAATTATCCCGCTCGAGCAATCCCACCG
ACCAATGCGGATCGTCAAAAGCCATCACCAACTGTTGCGCCAGCTGTACG
CCCAATGTGGCATAGCGGATGGCATGGCCATAGCGAGGATCGTAGGCTGG
TGGCTGCAGCAGGGCCAAACCCATATCCAAACGTCGCTGAACTGGTCTCA
GTCGCACCCTGGCCTCATAGGCCTCCACGGGATCGGTGGGAGCAGGCAAA
AACTCTTCGAAAAGTCGATTGTTTCTTTGGGACTGAACCACTCCCAGCAG
CTGGCGGAGATTTTGCCAATAATTGCCACGTTCCAGCTGCAGTTTAAGGA
TCACTGGACGCTCGTAAGTGGGCATCTGCAGCTTTAGGTTCCTAAGTTTT
TCCTGGCCACCCGCTGAGTGCCCTCACCAACCATTCCCGCACTAGACTTT
GC
BO14939.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-PA | 2091 | CG4723-RA | 1249..2088 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-RA | 2272 | CG4723-RA | 1223..2108 | 902..19 | 4335 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:02:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22761604..22762489 | 19..902 | 4270 | 99.3 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:02:19 has no hits.
BO14939.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:42 Download gff for
BO14939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-PA | 1203..2091 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:47 Download gff for
BO14939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-PA | 1203..2091 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:38:25 Download gff for
BO14939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 1223..2111 | 15..902 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:31 Download gff for
BO14939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 1223..2111 | 15..902 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:31 Download gff for
BO14939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22761601..22762489 | 15..902 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:38:25 Download gff for
BO14939.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18587323..18588211 | 15..902 | 99 | | Plus |
BO14939.5prime Sequence
900 bp (807 high quality bases) assembled on 2006-05-29
> BO14939.5prime
GAAGTTATCAGTCGACATGTCGGACCCGTGTTGGACGACAGTATTTTTAT
GGCTGCTCTGGCTGCCACACCTCCAGCAAAATGCTTTGGTTTCTGGCGAG
GATCTACCACCGCCGTTCCAGCGGATCTACCAATCGGAACAGACGGTACG
ACGTTCAAAGGCTCAGGATATGGGCAGTCATGTGAACAAAAGCATCGATC
CCTGTGTGGATTTCTATGCATATGCATGCGGCAATTGGAAGTCAACTCTA
ACCCCACAGCAGCAATTGCAGCAGCAAACAGACCGGGAGCTTCTTCTGCT
CGTGGAGGAGGCTGTAAGGAGAGAGGATAGCGTCATAGTTCGACAGGCCA
AGGAGCTATTCAAGTCCTGCGTATCGGCACAGGCTCATCAGAGCCAGCAG
CAGCAGCATTTCCTCAGCGAGTTCATCAACCAGAACGGAGGCTTTCCAGC
TGTTCCCGGTTCCCAATGGGCAGTGCATCACCATGACTACAATTGGCTTA
GTGTGTTAGGTGGTCTAAGACTTCGCTATGGAATGGACATCCTGATCGGA
CTCCGAGTGGGCTATAACTATGGCAATGTAAATGAGAACAGCTTGTATTT
AAGTGAACCGAGCACATTGATTCCAACCGAGTTGTGCACTCGGAATCGCT
CAGATATTCGGGACTCCATTTACGAACCCCTTGAACATCGAGTGGCATCC
GAACTAAAATCTTGGTTGGCATTGGGACACGATGAATCCGCTCGTCTAGC
TGCCGACATTCTTAGTTTCGAGCATGAGTTATGTGGTGGAATGAAAGGTG
GATCCTTTGAATCCTGGGATGCCGAGGAACAGCTCTATCTAGCCAACTAC
ACCCGCAAAACGTTGCGTGAGTTCTCGAATTCGATCGAACTGGATTTGGA
BO14939.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-PA | 2091 | CG4723-RA | 1..884 | 17..900 | 4420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-RA | 2272 | CG4723-RA | 20..904 | 16..900 | 4425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22762808..22763692 | 900..16 | 4425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:33:38 has no hits.
BO14939.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:43 Download gff for
BO14939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:48 Download gff for
BO14939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-PA | 1..883 | 17..899 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:50 Download gff for
BO14939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 12..903 | 8..899 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:51:14 Download gff for
BO14939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 12..903 | 8..899 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:51:14 Download gff for
BO14939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22762809..22763700 | 8..899 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:50 Download gff for
BO14939.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18588531..18589422 | 8..899 | 99 | | Minus |
BO14939.complete Sequence
2122 bp (2122 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633287
> BO14939.complete
GAAGTTATCAGTCGACATGTCGGACCCGTGTTGGACGACAGTATTTTTAT
GGCTGCTCTGGCTGCCACACCTCCAGCAAAATGCTTTGGTTTCTGGCGAG
GATCTACCACCGCCGTTCCAGCGGATCTACCAATCGGAACAGACGGTACG
ACGTTCAAAGGCTCAGGATATGGGCAGTCATGTGAACAAAAGCATCGATC
CCTGTGTGGATTTCTATGCATATGCATGCGGCAATTGGAAGTCAACTCTA
ACCCCACAGCAGCAATTGCAGCAGCAAACAGACCGGGAGCTTCTTCTGCT
CGTGGAGGAGGCTGTAAGGAGAGAGGATAGCGTCATAGTTCGACAGGCCA
AGGAGCTATTCAAGTCCTGCGTATCGGCACAGGCTCATCAGAGCCAGCAG
CAGCAGCATTTCCTCAGCGAGTTCATCAACCAGAACGGAGGCTTTCCAGC
TGTTCCCGGTTCCCAATGGGCAGTGCATCACCATGACTACAATTGGCTTA
GTGTGTTAGGTGGTCTAAGACTTCGCTATGGAATGGACATCCTGATCGGA
CTCCGAGTGGGCTATAACTATGGCAATGTAAATGAGAACAGCTTGTATTT
AAGTGAACCGAGCACATTGATTCCAACCGAGTTGTGCACTCGGAATCGCT
CAGATATTCGGGACTCCATTTACGAACCCCTTGAACATCGAGTGGCATCC
GAACTAAAATCTTGGTTGGCATTGGGACACGATGAATCCGCTCGTCTAGC
TGCCGACATTCTTAGTTTCGAGCATGAGTTATGTGGTGGAATGAAAGGTG
GATCCTTTGAATCCTGGGATGCCGAGGAACAGCTCTATCTAGCCAACTAC
ACCCGCAAAACGTTGCGTGAGTTCTCGAATTCGATCGAACTGGATTTGGA
TTCATATGTAAGGGCAAGTTTTGGCCAGGATATTTATAAACCCGTTTACA
TGGCAGCACCGGAATATTTTCGCCAACTTAAGCGCACTGTGAGTGCCCAC
AACATAAGTCTAGTGGCTAACTATATAATGTATCGAGCGGTGTCTGCTCT
GAATTTTCCTCTAGATGATCGCCCGCAGTTAAGGAAACGGGAGTGCTTGG
AACGAACTAAAGAACTACTTCCCACGGCATTGGGTGAATTATATGCCCGG
CAGTTTGGAACTGAAGATGGCAGAATAGATTTGGACAACCTTTATGATAC
ATTAAAGACAGCTTTGAGGCAAAGTCTAGGTGCGGAATGGTTGGTGGAGG
GCACTCAGCGGGTGGGCCAGGAAAAACTTAGGAACCTAAAGCTGCAGATG
CCCACTTACGAGCGTCCAGTGATCCTTAAACTGCAGCTGGAACGTGGCAA
TTATTGGCAAAATCTCCGCCAGCTGCTGGGAGTGGTTCAGTCCCAAAGAA
ACAATCGACTTTTCGAAGAGTTTTTGCCTGCTCCCACCGATCCCGTGGAG
GCCTATGAGGCCAGGGTGCGACTGAGACCAGTTCAGCGACGTTTGGATAT
GGGTTTGGCCCTGCTGCAGCCACCAGCCTACGATCCTCGCTATGGCCATG
CCATCCGCTATGCCACATTGGGCGTACAGCTGGCGCAACAGTTGGTGATG
GCTTTTGACGATCCGCATTGGTCGGTGGGATTGCTCGAGCGGGATAATTG
GGATGGTCAAACAGCCTGGCAATATCACATTCGAAGCAATTGCTTTGCCC
GCCAGGTGGACAATTATTTGAGGCCCAATGTAAGTGCCACCACGCAGCTG
ATCACGGACAGCGCAGCCATCAATGTCGCCTTTCGGGCGTATCTCACATG
GCTGGGTTTCCAGGAGCCAAACAACGACTTCACTAAACTGACCAAGGAGA
CTCTGCCGGATCTGAACTACTCAAACACGGCACTATTCTTCTTAGCTTAT
GCCCAAGAGCATTGCAGTCTGGAGGAGGCTCGTCCCAGGGATGAGCAAGG
GACTCCGGAAGGATACCTCTATAGTGCACGACAGAATCACACCTGGACTC
GCCTGCTTGTAAACGGACCTTTGCGAAACTCAGTTGAATTTGCGAGTGAA
TTTCGGTGCCCCATTGGATCACCCATGAATCCTGCATCCAAGTGCATCAT
ATACGCAAGCTTTCTAGACCAT
BO14939.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-RA | 2091 | CG4723-PA | 1..2088 | 17..2104 | 10440 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:30:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-RA | 2272 | CG4723-RA | 20..2108 | 16..2104 | 10445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:30:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22761604..22763692 | 2104..16 | 10445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:30:53 has no hits.
BO14939.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:46 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 1..2091 | 17..2108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:15 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 12..2111 | 8..2108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:45:15 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 21..2108 | 17..2106 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:46 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 12..2111 | 8..2108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:13:24 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4723-RA | 21..2108 | 17..2106 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:13:24 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22761602..22763691 | 17..2106 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:45:15 Download gff for
BO14939.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18587324..18589413 | 17..2106 | 99 | | Minus |
BO14939.pep Sequence
Translation from 16 to 2122
> BO14939.pep
MSDPCWTTVFLWLLWLPHLQQNALVSGEDLPPPFQRIYQSEQTVRRSKAQ
DMGSHVNKSIDPCVDFYAYACGNWKSTLTPQQQLQQQTDRELLLLVEEAV
RREDSVIVRQAKELFKSCVSAQAHQSQQQQHFLSEFINQNGGFPAVPGSQ
WAVHHHDYNWLSVLGGLRLRYGMDILIGLRVGYNYGNVNENSLYLSEPST
LIPTELCTRNRSDIRDSIYEPLEHRVASELKSWLALGHDESARLAADILS
FEHELCGGMKGGSFESWDAEEQLYLANYTRKTLREFSNSIELDLDSYVRA
SFGQDIYKPVYMAAPEYFRQLKRTVSAHNISLVANYIMYRAVSALNFPLD
DRPQLRKRECLERTKELLPTALGELYARQFGTEDGRIDLDNLYDTLKTAL
RQSLGAEWLVEGTQRVGQEKLRNLKLQMPTYERPVILKLQLERGNYWQNL
RQLLGVVQSQRNNRLFEEFLPAPTDPVEAYEARVRLRPVQRRLDMGLALL
QPPAYDPRYGHAIRYATLGVQLAQQLVMAFDDPHWSVGLLERDNWDGQTA
WQYHIRSNCFARQVDNYLRPNVSATTQLITDSAAINVAFRAYLTWLGFQE
PNNDFTKLTKETLPDLNYSNTALFFLAYAQEHCSLEEARPRDEQGTPEGY
LYSARQNHTWTRLLVNGPLRNSVEFASEFRCPIGSPMNPASKCIIYASFL
DH
BO14939.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4723-PA | 696 | CG4723-PA | 1..696 | 1..696 | 3687 | 100 | Plus |
| CG4725-PA | 741 | CG4725-PA | 47..741 | 39..696 | 936 | 32.1 | Plus |
| CG14526-PC | 707 | CG14526-PC | 44..707 | 41..696 | 589 | 26.4 | Plus |
| CG14527-PA | 700 | CG14527-PA | 37..700 | 41..696 | 540 | 25.2 | Plus |
| CG14528-PA | 682 | CG14528-PA | 3..682 | 7..696 | 514 | 25.4 | Plus |
