Clone Sequence Records
BO14940.3prime Sequence
898 bp (816 high quality bases) assembled on 2006-05-29
> BO14940.3prime
ATGGTCTAGAAAGCTTGCGGAGCCCAGTGGCGACATGCCGATCTGCTGCG
GAGTGGCGCCGAGTTCCAGGTTCTTGAGCAGCATCTGCAGCCACTGCTTG
GTCGACTTGTCCTCTTGCAGGCACAGCGCAAAGGTGCCGTCACGCAGCTG
ATCGGGCAGACACTGTCCCAGGGCCTTGCGAGCGCGTGTATTGTCCGAAA
GACGCAGATAGCAGCGCACCACATGCTTCAACAGCCGGGCGCATGGATCC
TTCGCCAGCTGGATGACCATTTTGCCCAGGGTGATGGCCACGTGCGAAAA
GCGTTCGTAGGTCTGGCAGATGTACGACAGACCCGACTCATCGAGCAGGA
TCTTCTGGATGATGAAAGTGGCCACAGTCTTGCTCAGCTCCGATCCGCTG
TCCATGATGCTCAGACAAAGGGGCACGATCTCGGTGGTCAGCAGAAAGGT
GATCACCTCCTGTTCGTCGGTCTTGACCAGAGCACCAATCACGCCCAAAC
TGGTCAGGCGCAAGTACTCGAAGGGCCTGGTCTTGGACGTGGTCGACAAG
AAAGGGTACAAGTACAGCGGTATCTGGGCCTGCAGGAAGGCCGTGCGAGT
CTCCGGGTGCGAGGCGACGCACTGCAGCAGCGCCAGGGCGTTGCACACGC
GGTTCGACTGGTGGGCCGTCAAAGTGGGCGGCGTTATCGATGGGTAGATG
TTAACAATCTCCTGCAACAGGGCGCAGGCGGTCCCGAAGCTGTTCCACAG
CATGGGGGCCAGGTCCGTCTCACGCTTCTTGCTTAGCTCGAGCAGAGCGG
TTTCACGCGTGTCCGGATGGGCCAGCTCATTGATTCACTGGTACACCTTC
TCCTGCTCGGGCTGCTGCTGCTGCTGTTGCTGCTGCTGCTGCTGCTGA
BO14940.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14213-PB | 915 | CG14213-RB | 33..912 | 898..19 | 4350 | 99.7 | Minus |
| CG14213-PA | 915 | CG14213-RA | 33..912 | 898..19 | 4350 | 99.7 | Minus |
| CG9573-PA | 873 | CG9573-RA | 280..387 | 624..517 | 340 | 92.5 | Minus |
| CG9573-PA | 873 | CG9573-RA | 548..644 | 356..260 | 210 | 88.6 | Minus |
| CG9573-PA | 873 | CG9573-RA | 802..837 | 102..67 | 180 | 100 | Minus |
| CG9573-PA | 873 | CG9573-RA | 137..197 | 767..707 | 155 | 90.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-RA | 1612 | CG14213-RA | 454..1333 | 898..19 | 4370 | 99.8 | Minus |
| Rcd-1-RB | 1544 | CG14213-RB | 386..1265 | 898..19 | 4370 | 99.8 | Minus |
| Rcd-1-RC | 1725 | CG14213-RC | 576..1446 | 898..19 | 4225 | 98.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19639444..19639820 | 848..472 | 1870 | 99.7 | Minus |
| 2L | 23513712 | 2L | 9013086..9013889 | 67..870 | 1860 | 82.1 | Plus |
| X | 23542271 | X | 19639894..19640091 | 473..276 | 990 | 100 | Minus |
| X | 23542271 | X | 19640301..19640467 | 185..19 | 835 | 100 | Minus |
| X | 23542271 | X | 19640147..19640239 | 277..185 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:11:39 has no hits.
BO14940.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:43 Download gff for
BO14940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-PB | 34..915 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:50 Download gff for
BO14940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-PA | 34..915 | 18..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:58 Download gff for
BO14940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 387..1265 | 19..897 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:56 Download gff for
BO14940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 387..1265 | 19..897 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:56 Download gff for
BO14940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19639343..19639393 | 847..897 | 98 | -> | Minus |
| X | 19639446..19639820 | 472..846 | 99 | -> | Minus |
| X | 19639896..19640090 | 277..471 | 100 | -> | Minus |
| X | 19640148..19640239 | 185..276 | 100 | -> | Minus |
| X | 19640302..19640467 | 19..184 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:58 Download gff for
BO14940.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19533929..19534123 | 277..471 | 100 | -> | Minus |
| arm_X | 19534181..19534272 | 185..276 | 100 | -> | Minus |
| arm_X | 19533479..19533853 | 472..846 | 99 | -> | Minus |
| arm_X | 19533376..19533426 | 847..897 | 98 | -> | Minus |
| arm_X | 19534335..19534500 | 19..184 | 100 | | Minus |
BO14940.5prime Sequence
913 bp (723 high quality bases) assembled on 2006-05-29
> BO14940.5prime
GAAGTTATCAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAG
GTGTACCAGTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGC
TCTGCTCGAGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGT
GGAACAGCTTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATC
TACCCATCGATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGT
GTGCAACGCCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTC
GCACGGCCTTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTG
TCGACCACGTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTT
GGGCGTGATTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCT
TTCTGCTGACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGC
GGATCGGAGCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCT
GCTCGATGAGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTT
CGCACGTGGCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGAT
CCATGCGCCCGGCTGTTGAAGCATGGGGTGCGCTGCTATCTGCGTCTTTC
GGACAATACACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGC
TGCGTGACGGCACCTTTGCGCTGTGCCTGCAAGAGGACAAGTCGACCAAG
CAGTGGCTGCAGATGCTGCTCAAGACCCTGGAACTCGGCGCCACTCCGCA
GCAGATCGGCATG
BO14940.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14213-PB | 915 | CG14213-RB | 1..897 | 17..913 | 4435 | 99.7 | Plus |
| CG14213-PA | 915 | CG14213-RA | 1..897 | 17..913 | 4435 | 99.7 | Plus |
| CG9573-PA | 873 | CG9573-RA | 280..387 | 323..430 | 340 | 92.5 | Plus |
| CG9573-PA | 873 | CG9573-RA | 548..644 | 591..687 | 210 | 88.6 | Plus |
| CG9573-PA | 873 | CG9573-RA | 34..128 | 77..171 | 175 | 87.3 | Plus |
| CG9573-PA | 873 | CG9573-RA | 802..832 | 845..875 | 155 | 100 | Plus |
| CG9573-PA | 873 | CG9573-RA | 137..197 | 180..240 | 155 | 90.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-RA | 1612 | CG14213-RA | 422..1318 | 17..913 | 4455 | 99.8 | Plus |
| Rcd-1-RB | 1544 | CG14213-RB | 354..1250 | 17..913 | 4455 | 99.8 | Plus |
| Rcd-1-RC | 1725 | CG14213-RC | 544..1431 | 17..913 | 4310 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19639444..19639820 | 99..475 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 9013086..9013889 | 880..77 | 1845 | 82 | Minus |
| X | 23542271 | X | 19639894..19640091 | 474..671 | 990 | 100 | Plus |
| X | 23542271 | X | 19640301..19640452 | 762..913 | 745 | 99.3 | Plus |
| X | 23542271 | X | 19640147..19640239 | 670..762 | 450 | 98.9 | Plus |
| X | 23542271 | X | 19639310..19639395 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:37:19 has no hits.
BO14940.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:44 Download gff for
BO14940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-PB | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:51 Download gff for
BO14940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-PB | 1..897 | 17..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:20 Download gff for
BO14940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 350..1250 | 9..913 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:45 Download gff for
BO14940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 350..1250 | 9..913 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:45 Download gff for
BO14940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19639315..19639393 | 22..100 | 100 | -> | Plus |
| X | 19639446..19639820 | 101..475 | 100 | -> | Plus |
| X | 19639896..19640090 | 476..670 | 100 | -> | Plus |
| X | 19640148..19640239 | 671..762 | 98 | -> | Plus |
| X | 19640302..19640452 | 763..913 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:20 Download gff for
BO14940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19533348..19533426 | 22..100 | 100 | -> | Plus |
| arm_X | 19533479..19533853 | 101..475 | 100 | -> | Plus |
| arm_X | 19533929..19534123 | 476..670 | 100 | -> | Plus |
| arm_X | 19534181..19534272 | 671..762 | 98 | -> | Plus |
| arm_X | 19534335..19534485 | 763..913 | 99 | | Plus |
BO14940.complete Sequence
946 bp assembled on 2007-10-17
GenBank Submission: FJ633288
> BO14940.complete
GAAGTTATCAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTC
AGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAG
GTGTACCAGTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGC
TCTGCTCGAGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGT
GGAACAGCTTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATC
TACCCATCGATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGT
GTGCAACGCCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTC
GCACGGCCTTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTG
TCGACCACGTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTT
GGGCGTGATTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCT
TTCTGCTGACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGC
GGATCGGAGCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCT
GCTCGATGAGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTT
CGCACGTGGCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGAT
CCATGCGCCCGGCTGTTGAAGCATGTGGTGCGCTGCTATCTGCGTCTTTC
GGACAATACACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGC
TGCGTGACGGCACCTTTGCGCTGTGCCTGCAAGAGGACAAGTCGACCAAG
CAGTGGCTGCAGATGCTGCTCAAGAACCTGGAACTCGGCGCCACTCCGCA
GCAGATCGGCATGTCGCCACTGGGCTCCGCAAGCTTTCTAGACCAT
BO14940.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:49:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-RA | 915 | CG14213-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
| Rcd-1-RB | 915 | CG14213-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
| Rcd-1-RC | 906 | CG14213-PC | 1..903 | 17..928 | 4390 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:49:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-RA | 1612 | CG14213-RA | 422..1333 | 17..928 | 4560 | 100 | Plus |
| Rcd-1-RB | 1544 | CG14213-RB | 354..1265 | 17..928 | 4560 | 100 | Plus |
| Rcd-1-RC | 1725 | CG14213-RC | 544..1446 | 17..928 | 4390 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:48:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19639444..19639820 | 99..475 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 9013086..9013889 | 880..77 | 1875 | 82.2 | Minus |
| X | 23542271 | X | 19639894..19640091 | 474..671 | 990 | 100 | Plus |
| X | 23542271 | X | 19640301..19640467 | 762..928 | 835 | 100 | Plus |
| X | 23542271 | X | 19640147..19640239 | 670..762 | 465 | 100 | Plus |
| X | 23542271 | X | 19639310..19639395 | 17..102 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:49:00 has no hits.
BO14940.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:30 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-RA | 1..915 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:47 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-RA | 418..1333 | 9..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:41:54 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 354..1265 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:43:24 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-RA | 422..1333 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:31:35 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 354..1265 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:31:35 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19639896..19640090 | 476..670 | 100 | -> | Plus |
| X | 19640148..19640239 | 671..762 | 100 | -> | Plus |
| X | 19640302..19640467 | 763..930 | 98 | | Plus |
| X | 19639310..19639393 | 17..100 | 100 | -> | Plus |
| X | 19639446..19639820 | 101..475 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:41:54 Download gff for
BO14940.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19533343..19533426 | 17..100 | 100 | -> | Plus |
| arm_X | 19533479..19533853 | 101..475 | 100 | -> | Plus |
| arm_X | 19533929..19534123 | 476..670 | 100 | -> | Plus |
| arm_X | 19534181..19534272 | 671..762 | 100 | -> | Plus |
| arm_X | 19534335..19534500 | 763..930 | 98 | | Plus |
BO14940.pep Sequence
Translation from 16 to 946
> BO14940.pep
MSAQPSPHMNPQQQQQQQQQQQQTEQEKVYQWINELAHPDTRETALLELS
KKRETDLAPMLWNSFGTACALLQEIVNIYPSITPPTLTAHQSNRVCNALA
LLQCVASHPETRTAFLQAQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGA
LVKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESG
LSYICQTYERFSHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRA
RKALGQCLPDQLRDGTFALCLQEDKSTKQWLQMLLKNLELGATPQQIGMS
PLGSASFLDH
BO14940.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-PA | 304 | CG14213-PA | 1..304 | 1..304 | 1563 | 100 | Plus |
| Rcd-1-PB | 304 | CG14213-PB | 1..304 | 1..304 | 1563 | 100 | Plus |
| Rcd-1-PC | 301 | CG14213-PC | 1..301 | 1..304 | 1533 | 99 | Plus |
| Rcd-1r-PA | 290 | CG9573-PA | 1..290 | 1..305 | 977 | 65.2 | Plus |
| CG2053-PB | 298 | CG2053-PB | 9..258 | 21..267 | 469 | 40 | Plus |
