Clone Sequence Records
BO14941.3prime Sequence
809 bp (750 high quality bases) assembled on 2006-05-29
> BO14941.3prime
ATGGTCTAGAAAGCTTGCATTATCCAACTGTGGCTTCCACATGACTGGCA
TGTCCACCTCCGTCGTCTCACCCATCTCCAGCATGAGGACAGTTCCATTT
TTGGACGTCTCTATTGCTGAGACCAGGTTCCTCGCACAATCCTCGGCCTT
CTGACGCTTCACCCGGTTGAACATGGCCAGCATGGGAGTGTCGTAGGTGA
ATGTCGTCTTGTTGCCAATATCCTCCAGTAGCCCAGTGTCCGTGAATCCG
GGACAGATGGTAAGGAAGCCTACACCAGAGTGGGCGTAAAAGTAGGGGTT
AGCCATGGCTCTGGTGAATGTGGTAACTCCCGTCTTGGCCGCCGAGTAAA
TGGCCATTATAGCTGTGGGCTGCAGTCCAGCCACCGATGATATATTCACT
ATGAGCCCACCCTTTCCGCCTTTGGCCTTGTCCATGTACTCCAAGGCGGT
CAAAGTGCTGTTGATAACTCCCAGCAGATTAATTTGAATAGTGAGTTCGA
CCAGGCGATCGTTCATCAGTCCACTGCCATTGACCACCACATCGAAGTGT
CCGAATCTCTCGGCGGTCGCCTTGTAGGCCGCGTCTATATCCGATTTCTG
GGTTATGTCCAGCTTGTGGTAGAAGACGTCCGTATCGGGATGCTGGCTTT
TCCACTTAGCCAAGAGCTGCTCATTAGCATTTAGATCGAAAATGGCTAGA
GCCTTTATTGGTCGCTGGAGCAGTTCTTGCACACATTTTTGGCCTATTCC
ACCGAATCCGCCAAGGTAAACGACATTTTTGCCGGCTAAGTCCATGTCGA
CTGATAACT
BO14941.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-PA | 780 | CG4842-RA | 1..777 | 795..19 | 3885 | 100 | Minus |
CG18814-PA | 858 | CG18814-RA | 130..230 | 666..566 | 180 | 87.1 | Minus |
CG18814-PA | 858 | CG18814-RA | 16..77 | 780..719 | 160 | 90.3 | Minus |
CG18814-PA | 858 | CG18814-RA | 244..275 | 552..521 | 135 | 96.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 934 | CG4842-RA | 65..845 | 799..19 | 3905 | 100 | Minus |
CG18814-RB | 956 | CG18814-RB | 66..783 | 780..66 | 1225 | 78.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16369148..16369429 | 300..19 | 1410 | 100 | Minus |
3L | 28110227 | 3L | 16368606..16368835 | 704..475 | 1150 | 100 | Minus |
3L | 28110227 | 3L | 16368904..16369078 | 475..301 | 875 | 100 | Minus |
3L | 28110227 | 3L | 16368453..16368550 | 799..702 | 490 | 100 | Minus |
3L | 28110227 | 3L | 16370060..16370251 | 666..475 | 480 | 83.3 | Minus |
3L | 28110227 | 3L | 16370307..16370479 | 473..301 | 385 | 81.5 | Minus |
3L | 28110227 | 3L | 16369891..16369952 | 780..719 | 220 | 90.3 | Minus |
Blast to na_te.dros performed on 2015-02-10 17:51:16 has no hits.
BO14941.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:45 Download gff for
BO14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-PA | 1..780 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:52 Download gff for
BO14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-PA | 1..780 | 15..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:04:44 Download gff for
BO14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 58..848 | 15..809 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:33 Download gff for
BO14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 58..848 | 15..809 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:33 Download gff for
BO14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16368446..16368549 | 703..809 | 95 | -> | Minus |
3L | 16368608..16368835 | 475..702 | 100 | -> | Minus |
3L | 16368905..16369078 | 301..474 | 100 | -> | Minus |
3L | 16369148..16369432 | 15..300 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:04:44 Download gff for
BO14941.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16361546..16361649 | 703..809 | 95 | -> | Minus |
arm_3L | 16361708..16361935 | 475..702 | 100 | -> | Minus |
arm_3L | 16362005..16362178 | 301..474 | 100 | -> | Minus |
arm_3L | 16362248..16362532 | 15..300 | 99 | | Minus |
BO14941.5prime Sequence
809 bp (714 high quality bases) assembled on 2006-05-29
> BO14941.5prime
GAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAAGCACAGTTGGATAATGCAAGCT
TTCTAGACC
BO14941.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-PA | 780 | CG4842-RA | 1..777 | 17..793 | 3835 | 99.7 | Plus |
CG18814-PA | 858 | CG18814-RA | 130..230 | 146..246 | 180 | 87.1 | Plus |
CG18814-PA | 858 | CG18814-RA | 16..77 | 32..93 | 160 | 90.3 | Plus |
CG18814-PA | 858 | CG18814-RA | 244..275 | 260..291 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 934 | CG4842-RA | 65..845 | 13..793 | 3875 | 99.7 | Plus |
CG18814-RB | 956 | CG18814-RB | 66..783 | 32..746 | 1225 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16369148..16369429 | 512..793 | 1380 | 99.3 | Plus |
3L | 28110227 | 3L | 16368606..16368835 | 108..337 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 16368904..16369078 | 337..511 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16368453..16368550 | 13..110 | 490 | 100 | Plus |
3L | 28110227 | 3L | 16370060..16370251 | 146..337 | 480 | 83.3 | Plus |
3L | 28110227 | 3L | 16370307..16370479 | 339..511 | 385 | 81.5 | Plus |
3L | 28110227 | 3L | 16369891..16369952 | 32..93 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:17:10 has no hits.
BO14941.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:47 Download gff for
BO14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-PA | 1..780 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:54 Download gff for
BO14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-PA | 1..780 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:11 Download gff for
BO14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 62..848 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:08 Download gff for
BO14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 62..848 | 9..797 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:08 Download gff for
BO14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16368450..16368549 | 9..109 | 99 | -> | Plus |
3L | 16368608..16368835 | 110..337 | 100 | -> | Plus |
3L | 16368905..16369078 | 338..511 | 100 | -> | Plus |
3L | 16369148..16369432 | 512..797 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:11 Download gff for
BO14941.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16361550..16361649 | 9..109 | 99 | -> | Plus |
arm_3L | 16361708..16361935 | 110..337 | 100 | -> | Plus |
arm_3L | 16362005..16362178 | 338..511 | 100 | -> | Plus |
arm_3L | 16362248..16362532 | 512..797 | 98 | | Plus |
BO14941.complete Sequence
811 bp (811 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633289
> BO14941.complete
GAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGATAATGCAAGCT
TTCTAGACCAT
BO14941.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 780 | CG4842-PA | 1..777 | 17..793 | 3885 | 100 | Plus |
CG18814-RB | 804 | CG18814-PB | 16..733 | 32..746 | 1200 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-RA | 934 | CG4842-RA | 65..845 | 13..793 | 3905 | 100 | Plus |
CG18814-RB | 956 | CG18814-RB | 66..783 | 32..746 | 1200 | 78.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16369148..16369429 | 512..793 | 1410 | 100 | Plus |
3L | 28110227 | 3L | 16368606..16368835 | 108..337 | 1150 | 100 | Plus |
3L | 28110227 | 3L | 16368904..16369078 | 337..511 | 875 | 100 | Plus |
3L | 28110227 | 3L | 16368453..16368550 | 13..110 | 490 | 100 | Plus |
3L | 28110227 | 3L | 16370060..16370251 | 146..337 | 480 | 83.3 | Plus |
3L | 28110227 | 3L | 16370307..16370479 | 339..511 | 385 | 81.5 | Plus |
3L | 28110227 | 3L | 16369891..16369952 | 32..93 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:47:45 has no hits.
BO14941.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:11 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 1..780 | 17..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:49 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 44..830 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:03 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 69..845 | 17..795 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:11 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 44..830 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:08 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4842-RA | 69..845 | 17..795 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:08 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16368457..16368549 | 17..109 | 100 | -> | Plus |
3L | 16368608..16368835 | 110..337 | 100 | -> | Plus |
3L | 16368905..16369078 | 338..511 | 100 | -> | Plus |
3L | 16369148..16369429 | 512..795 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:03 Download gff for
BO14941.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 16362248..16362529 | 512..795 | 99 | | Plus |
arm_3L | 16361557..16361649 | 17..109 | 100 | -> | Plus |
arm_3L | 16361708..16361935 | 110..337 | 100 | -> | Plus |
arm_3L | 16362005..16362178 | 338..511 | 100 | -> | Plus |
BO14941.pep Sequence
Translation from 16 to 811
> BO14941.pep
MDLAGKNVVYLGGFGGIGQKCVQELLQRPIKALAIFDLNANEQLLAKWKS
QHPDTDVFYHKLDITQKSDIDAAYKATAERFGHFDVVVNGSGLMNDRLVE
LTIQINLLGVINSTLTALEYMDKAKGGKGGLIVNISSVAGLQPTAIMAIY
SAAKTGVTTFTRAMANPYFYAHSGVGFLTICPGFTDTGLLEDIGNKTTFT
YDTPMLAMFNRVKRQKAEDCARNLVSAIETSKNGTVLMLEMGETTEVDMP
VMWKPQLDNASFLDH
BO14941.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4842-PA | 259 | CG4842-PA | 1..259 | 1..259 | 1335 | 100 | Plus |
CG18814-PB | 267 | CG18814-PB | 1..264 | 1..263 | 1036 | 74.2 | Plus |
Pdh-PC | 261 | CG4899-PC | 1..254 | 1..253 | 501 | 39 | Plus |
Pdh-PA | 278 | CG4899-PA | 18..271 | 1..253 | 501 | 39 | Plus |
Pdh-PD | 260 | CG4899-PD | 1..253 | 1..253 | 495 | 39.4 | Plus |