Clone BO14941 Report

Search the DGRC for BO14941

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG4842-RA
Protein status:BO14941.pep: validated full length
Sequenced Size:811

Clone Sequence Records

BO14941.3prime Sequence

809 bp (750 high quality bases) assembled on 2006-05-29

> BO14941.3prime
ATGGTCTAGAAAGCTTGCATTATCCAACTGTGGCTTCCACATGACTGGCA
TGTCCACCTCCGTCGTCTCACCCATCTCCAGCATGAGGACAGTTCCATTT
TTGGACGTCTCTATTGCTGAGACCAGGTTCCTCGCACAATCCTCGGCCTT
CTGACGCTTCACCCGGTTGAACATGGCCAGCATGGGAGTGTCGTAGGTGA
ATGTCGTCTTGTTGCCAATATCCTCCAGTAGCCCAGTGTCCGTGAATCCG
GGACAGATGGTAAGGAAGCCTACACCAGAGTGGGCGTAAAAGTAGGGGTT
AGCCATGGCTCTGGTGAATGTGGTAACTCCCGTCTTGGCCGCCGAGTAAA
TGGCCATTATAGCTGTGGGCTGCAGTCCAGCCACCGATGATATATTCACT
ATGAGCCCACCCTTTCCGCCTTTGGCCTTGTCCATGTACTCCAAGGCGGT
CAAAGTGCTGTTGATAACTCCCAGCAGATTAATTTGAATAGTGAGTTCGA
CCAGGCGATCGTTCATCAGTCCACTGCCATTGACCACCACATCGAAGTGT
CCGAATCTCTCGGCGGTCGCCTTGTAGGCCGCGTCTATATCCGATTTCTG
GGTTATGTCCAGCTTGTGGTAGAAGACGTCCGTATCGGGATGCTGGCTTT
TCCACTTAGCCAAGAGCTGCTCATTAGCATTTAGATCGAAAATGGCTAGA
GCCTTTATTGGTCGCTGGAGCAGTTCTTGCACACATTTTTGGCCTATTCC
ACCGAATCCGCCAAGGTAAACGACATTTTTGCCGGCTAAGTCCATGTCGA
CTGATAACT

BO14941.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 780 CG4842-RA 1..777 795..19 3885 100 Minus
CG18814-PA 858 CG18814-RA 130..230 666..566 180 87.1 Minus
CG18814-PA 858 CG18814-RA 16..77 780..719 160 90.3 Minus
CG18814-PA 858 CG18814-RA 244..275 552..521 135 96.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 934 CG4842-RA 65..845 799..19 3905 100 Minus
CG18814-RB 956 CG18814-RB 66..783 780..66 1225 78.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369429 300..19 1410 100 Minus
3L 28110227 3L 16368606..16368835 704..475 1150 100 Minus
3L 28110227 3L 16368904..16369078 475..301 875 100 Minus
3L 28110227 3L 16368453..16368550 799..702 490 100 Minus
3L 28110227 3L 16370060..16370251 666..475 480 83.3 Minus
3L 28110227 3L 16370307..16370479 473..301 385 81.5 Minus
3L 28110227 3L 16369891..16369952 780..719 220 90.3 Minus
Blast to na_te.dros performed on 2015-02-10 17:51:16 has no hits.

BO14941.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:45 Download gff for BO14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-PA 1..780 15..795 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:52 Download gff for BO14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-PA 1..780 15..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:04:44 Download gff for BO14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 58..848 15..809 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:33 Download gff for BO14941.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 58..848 15..809 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:33 Download gff for BO14941.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16368446..16368549 703..809 95 -> Minus
3L 16368608..16368835 475..702 100 -> Minus
3L 16368905..16369078 301..474 100 -> Minus
3L 16369148..16369432 15..300 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:04:44 Download gff for BO14941.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16361546..16361649 703..809 95 -> Minus
arm_3L 16361708..16361935 475..702 100 -> Minus
arm_3L 16362005..16362178 301..474 100 -> Minus
arm_3L 16362248..16362532 15..300 99   Minus

BO14941.5prime Sequence

809 bp (714 high quality bases) assembled on 2006-05-29

> BO14941.5prime
GAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAAGCACAGTTGGATAATGCAAGCT
TTCTAGACC

BO14941.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 780 CG4842-RA 1..777 17..793 3835 99.7 Plus
CG18814-PA 858 CG18814-RA 130..230 146..246 180 87.1 Plus
CG18814-PA 858 CG18814-RA 16..77 32..93 160 90.3 Plus
CG18814-PA 858 CG18814-RA 244..275 260..291 135 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:17:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 934 CG4842-RA 65..845 13..793 3875 99.7 Plus
CG18814-RB 956 CG18814-RB 66..783 32..746 1225 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369429 512..793 1380 99.3 Plus
3L 28110227 3L 16368606..16368835 108..337 1150 100 Plus
3L 28110227 3L 16368904..16369078 337..511 875 100 Plus
3L 28110227 3L 16368453..16368550 13..110 490 100 Plus
3L 28110227 3L 16370060..16370251 146..337 480 83.3 Plus
3L 28110227 3L 16370307..16370479 339..511 385 81.5 Plus
3L 28110227 3L 16369891..16369952 32..93 220 90.3 Plus
Blast to na_te.dros performed on 2015-02-13 01:17:10 has no hits.

BO14941.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:47 Download gff for BO14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-PA 1..780 17..797 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:54 Download gff for BO14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-PA 1..780 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:45:11 Download gff for BO14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 62..848 9..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:08 Download gff for BO14941.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 62..848 9..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:08 Download gff for BO14941.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16368450..16368549 9..109 99 -> Plus
3L 16368608..16368835 110..337 100 -> Plus
3L 16368905..16369078 338..511 100 -> Plus
3L 16369148..16369432 512..797 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:45:11 Download gff for BO14941.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16361550..16361649 9..109 99 -> Plus
arm_3L 16361708..16361935 110..337 100 -> Plus
arm_3L 16362005..16362178 338..511 100 -> Plus
arm_3L 16362248..16362532 512..797 98   Plus

BO14941.complete Sequence

811 bp (811 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633289

> BO14941.complete
GAAGTTATCAGTCGACATGGACTTAGCCGGCAAAAATGTCGTTTACCTTG
GCGGATTCGGTGGAATAGGCCAAAAATGTGTGCAAGAACTGCTCCAGCGA
CCAATAAAGGCTCTAGCCATTTTCGATCTAAATGCTAATGAGCAGCTCTT
GGCTAAGTGGAAAAGCCAGCATCCCGATACGGACGTCTTCTACCACAAGC
TGGACATAACCCAGAAATCGGATATAGACGCGGCCTACAAGGCGACCGCC
GAGAGATTCGGACACTTCGATGTGGTGGTCAATGGCAGTGGACTGATGAA
CGATCGCCTGGTCGAACTCACTATTCAAATTAATCTGCTGGGAGTTATCA
ACAGCACTTTGACCGCCTTGGAGTACATGGACAAGGCCAAAGGCGGAAAG
GGTGGGCTCATAGTGAATATATCATCGGTGGCTGGACTGCAGCCCACAGC
TATAATGGCCATTTACTCGGCGGCCAAGACGGGAGTTACCACATTCACCA
GAGCCATGGCTAACCCCTACTTTTACGCCCACTCTGGTGTAGGCTTCCTT
ACCATCTGTCCCGGATTCACGGACACTGGGCTACTGGAGGATATTGGCAA
CAAGACGACATTCACCTACGACACTCCCATGCTGGCCATGTTCAACCGGG
TGAAGCGTCAGAAGGCCGAGGATTGTGCGAGGAACCTGGTCTCAGCAATA
GAGACGTCCAAAAATGGAACTGTCCTCATGCTGGAGATGGGTGAGACGAC
GGAGGTGGACATGCCAGTCATGTGGAAGCCACAGTTGGATAATGCAAGCT
TTCTAGACCAT

BO14941.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 780 CG4842-PA 1..777 17..793 3885 100 Plus
CG18814-RB 804 CG18814-PB 16..733 32..746 1200 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-RA 934 CG4842-RA 65..845 13..793 3905 100 Plus
CG18814-RB 956 CG18814-RB 66..783 32..746 1200 78.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16369148..16369429 512..793 1410 100 Plus
3L 28110227 3L 16368606..16368835 108..337 1150 100 Plus
3L 28110227 3L 16368904..16369078 337..511 875 100 Plus
3L 28110227 3L 16368453..16368550 13..110 490 100 Plus
3L 28110227 3L 16370060..16370251 146..337 480 83.3 Plus
3L 28110227 3L 16370307..16370479 339..511 385 81.5 Plus
3L 28110227 3L 16369891..16369952 32..93 220 90.3 Plus
Blast to na_te.dros performed on 2014-11-27 13:47:45 has no hits.

BO14941.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:11 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 1..780 17..797 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:49 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 44..830 9..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:03 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 69..845 17..795 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:11 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 44..830 9..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:08 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
CG4842-RA 69..845 17..795 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:08 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16368457..16368549 17..109 100 -> Plus
3L 16368608..16368835 110..337 100 -> Plus
3L 16368905..16369078 338..511 100 -> Plus
3L 16369148..16369429 512..795 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:03 Download gff for BO14941.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16362248..16362529 512..795 99   Plus
arm_3L 16361557..16361649 17..109 100 -> Plus
arm_3L 16361708..16361935 110..337 100 -> Plus
arm_3L 16362005..16362178 338..511 100 -> Plus

BO14941.pep Sequence

Translation from 16 to 811

> BO14941.pep
MDLAGKNVVYLGGFGGIGQKCVQELLQRPIKALAIFDLNANEQLLAKWKS
QHPDTDVFYHKLDITQKSDIDAAYKATAERFGHFDVVVNGSGLMNDRLVE
LTIQINLLGVINSTLTALEYMDKAKGGKGGLIVNISSVAGLQPTAIMAIY
SAAKTGVTTFTRAMANPYFYAHSGVGFLTICPGFTDTGLLEDIGNKTTFT
YDTPMLAMFNRVKRQKAEDCARNLVSAIETSKNGTVLMLEMGETTEVDMP
VMWKPQLDNASFLDH

BO14941.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG4842-PA 259 CG4842-PA 1..259 1..259 1335 100 Plus
CG18814-PB 267 CG18814-PB 1..264 1..263 1036 74.2 Plus
Pdh-PC 261 CG4899-PC 1..254 1..253 501 39 Plus
Pdh-PA 278 CG4899-PA 18..271 1..253 501 39 Plus
Pdh-PD 260 CG4899-PD 1..253 1..253 495 39.4 Plus