Clone Sequence Records
BO14942.3prime Sequence
599 bp (598 high quality bases) assembled on 2006-05-29
> BO14942.3prime
ATGGTCTAGAAAGCTTGCTAAGGGCCCAAAGAGATTTACTGCTGGATGAT
TATCGGCTGTGTTTCCCAAAAATTGACCATACAGTTCCTTATAGCGATCT
AGGGAAAGACCGCCACGTTTCCGGTCCTCGTCATTCAACAATGTTTCAAA
GGCTTTATCAATTGGAGTAATATCGTCGATGGCTACTCTAGTTATACAGT
TATAACGGTATTCTTTAACTCCGACTATTCCATCGCTGTCTATGTCAAGA
AGCTTGAAGTTTGATTCAATGAATGCTCTCATTGCCTGTGGAAATTCTTC
GTACTTTTTACCCACACATGTTTTTTTTACAGCATCCTTAAATTCTTGAT
TGGATATTTTGCCATCCTTATCGTCGTCAGCAATAGCAGAGATTTCATCC
CATAAATTTTTCATTAGCTTTTTATAATCATCCAATCGAGCAGTGCTGCA
ATCACCTTTTCCTTCTACGACACATGCTCTTACTGCCATGCACAGAAAAT
CATTTTGGTCCAGAAATCCATTGTTGTCGATATCATACATATACCGAACG
ACAAAATCGACACGGTTATCCCAGGAATAAGCCATGTCGACTGATAACT
BO14942.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:29:47 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 18:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp1-RB | 1198 | CG15848-RB | 115..681 | 585..19 | 2835 | 100 | Minus |
| Scp1-RA | 984 | CG15848-RA | 74..640 | 585..19 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 18:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 2963055..2963223 | 366..534 | 845 | 100 | Plus |
| 2R | 25286936 | 2R | 2937670..2937825 | 132..287 | 780 | 100 | Plus |
| 2R | 25286936 | 2R | 2856001..2856156 | 132..287 | 750 | 98.7 | Plus |
| 2R | 25286936 | 2R | 2853283..2853415 | 131..263 | 620 | 97.7 | Plus |
| 2R | 25286936 | 2R | 2933171..2933284 | 19..132 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 2954996..2955079 | 285..368 | 420 | 100 | Plus |
| 2R | 25286936 | 2R | 2967095..2967146 | 534..585 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 18:54:21 has no hits.
BO14942.3prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 19:03:28 Download gff for
BO14942.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 65..643 | 15..594 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 20:16:01 Download gff for
BO14942.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 65..643 | 15..594 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 20:16:01 Download gff for
BO14942.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 2933167..2933284 | 15..132 | 98 | <- | Plus |
| 2R | 2937671..2937823 | 133..285 | 100 | <- | Plus |
| 2R | 2954997..2955077 | 286..366 | 100 | <- | Plus |
| 2R | 2963056..2963222 | 367..533 | 100 | <- | Plus |
| 2R | 2967095..2967151 | 534..594 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 19:03:28 Download gff for
BO14942.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 1708136..1708253 | 15..132 | 98 | <- | Plus |
| 2RHet | 1712640..1712792 | 133..285 | 100 | <- | Plus |
| 2RHet | 1729966..1730046 | 286..366 | 100 | <- | Plus |
| 2RHet | 1738025..1738191 | 367..533 | 100 | <- | Plus |
| 2RHet | 1742064..1742120 | 534..594 | 93 | | Plus |
BO14942.5prime Sequence
599 bp (598 high quality bases) assembled on 2006-05-29
> BO14942.5prime
GAAGTTATCAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTG
TCGTTCGGTATATGTATGATATCGACAACAATGGATTTCTGGACCAAAAT
GATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGA
TTGCAGCACTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTAT
GGGATGAAATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCC
AATCAAGAATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTA
CGAAGAATTTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGC
TTCTTGACATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTAT
AACTGTATAACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGC
CTTTGAAACATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCC
TAGATCGCTATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGAT
AATCATCCAGCAGTAAATCTCTTTGGGCCCTTAGCAAGCTTTCTAGACC
BO14942.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-06 15:29:47 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:32:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp1-RB | 1198 | CG15848-RB | 115..681 | 17..583 | 2835 | 100 | Plus |
| Scp1-RA | 984 | CG15848-RA | 74..640 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 2963055..2963223 | 236..68 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 2937670..2937825 | 470..315 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 2856001..2856156 | 470..315 | 750 | 98.7 | Minus |
| 2R | 25286936 | 2R | 2853283..2853415 | 471..339 | 620 | 97.7 | Minus |
| 2R | 25286936 | 2R | 2933171..2933284 | 583..470 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 2954996..2955079 | 317..234 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 2967095..2967146 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:32:38 has no hits.
BO14942.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:34:35 Download gff for
BO14942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 65..643 | 8..587 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:47:54 Download gff for
BO14942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 65..643 | 8..587 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:47:54 Download gff for
BO14942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 2963056..2963222 | 69..235 | 100 | <- | Minus |
| 2R | 2967095..2967151 | 8..68 | 93 | | Minus |
| 2R | 2933167..2933284 | 470..587 | 98 | <- | Minus |
| 2R | 2937671..2937823 | 317..469 | 100 | <- | Minus |
| 2R | 2954997..2955077 | 236..316 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:34:35 Download gff for
BO14942.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 1708136..1708253 | 470..587 | 98 | <- | Minus |
| 2RHet | 1712640..1712792 | 317..469 | 100 | <- | Minus |
| 2RHet | 1729966..1730046 | 236..316 | 100 | <- | Minus |
| 2RHet | 1738025..1738191 | 69..235 | 100 | <- | Minus |
| 2RHet | 1742064..1742120 | 8..68 | 93 | | Minus |
BO14942.complete Sequence
601 bp (601 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633290
> BO14942.complete
GAAGTTATCAGTCGACATGGCTTATTCCTGGGATAACCGTGTCGATTTTG
TCGTTCGGTATATGTATGATATCGACAACAATGGATTTCTGGACCAAAAT
GATTTTCTGTGCATGGCAGTAAGAGCATGTGTCGTAGAAGGAAAAGGTGA
TTGCAGCACTGCTCGATTGGATGATTATAAAAAGCTAATGAAAAATTTAT
GGGATGAAATCTCTGCTATTGCTGACGACGATAAGGATGGCAAAATATCC
AATCAAGAATTTAAGGATGCTGTAAAAAAAACATGTGTGGGTAAAAAGTA
CGAAGAATTTCCACAGGCAATGAGAGCATTCATTGAATCAAACTTCAAGC
TTCTTGACATAGACAGCGATGGAATAGTCGGAGTTAAAGAATACCGTTAT
AACTGTATAACTAGAGTAGCCATCGACGATATTACTCCAATTGATAAAGC
CTTTGAAACATTGTTGAATGACGAGGACCGGAAACGTGGCGGTCTTTCCC
TAGATCGCTATAAGGAACTGTATGGTCAATTTTTGGGAAACACAGCCGAT
AATCATCCAGCAGTAAATCTCTTTGGGCCCTTAGCAAGCTTTCTAGACCA
T
BO14942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp1-RB | 570 | CG15848-PB | 1..567 | 17..583 | 2835 | 100 | Plus |
| Scp1-RA | 570 | CG15848-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:14:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp1-RB | 1198 | CG15848-RB | 115..681 | 17..583 | 2835 | 100 | Plus |
| Scp1-RA | 984 | CG15848-RA | 74..640 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:14:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 2963055..2963223 | 236..68 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 2937670..2937825 | 470..315 | 780 | 100 | Minus |
| 2R | 25286936 | 2R | 2856001..2856156 | 470..315 | 750 | 98.7 | Minus |
| 2R | 25286936 | 2R | 2853283..2853415 | 471..339 | 620 | 97.7 | Minus |
| 2R | 25286936 | 2R | 2933171..2933284 | 583..470 | 570 | 100 | Minus |
| 2R | 25286936 | 2R | 2954996..2955079 | 317..234 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 2967095..2967146 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:14:54 has no hits.
BO14942.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:13 Download gff for
BO14942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 1..570 | 17..587 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:50:06 Download gff for
BO14942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 74..640 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:40 Download gff for
BO14942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 74..640 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:13:58 Download gff for
BO14942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Scp1-RA | 74..640 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:13:58 Download gff for
BO14942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 2967095..2967146 | 17..68 | 100 | | Minus |
| 2R | 2933169..2933284 | 470..585 | 98 | <- | Minus |
| 2R | 2937671..2937823 | 317..469 | 100 | <- | Minus |
| 2R | 2954997..2955077 | 236..316 | 100 | <- | Minus |
| 2R | 2963056..2963222 | 69..235 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:40 Download gff for
BO14942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2RHet | 1712640..1712792 | 317..469 | 100 | <- | Minus |
| 2RHet | 1729966..1730046 | 236..316 | 100 | <- | Minus |
| 2RHet | 1708138..1708253 | 470..585 | 98 | <- | Minus |
| 2RHet | 1738025..1738191 | 69..235 | 100 | <- | Minus |
| 2RHet | 1742064..1742115 | 17..68 | 100 | | Minus |
BO14942.pep Sequence
Translation from 16 to 601
> BO14942.pep
MAYSWDNRVDFVVRYMYDIDNNGFLDQNDFLCMAVRACVVEGKGDCSTAR
LDDYKKLMKNLWDEISAIADDDKDGKISNQEFKDAVKKTCVGKKYEEFPQ
AMRAFIESNFKLLDIDSDGIVGVKEYRYNCITRVAIDDITPIDKAFETLL
NDEDRKRGGLSLDRYKELYGQFLGNTADNHPAVNLFGPLASFLDH
BO14942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:36:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Scp1-PB | 189 | CG15848-PB | 1..189 | 1..189 | 1007 | 100 | Plus |
| Scp1-PA | 189 | CG15848-PA | 1..189 | 1..189 | 1007 | 100 | Plus |
