Clone Sequence Records
BO14943.3prime Sequence
791 bp (767 high quality bases) assembled on 2006-05-29
> BO14943.3prime
ATGGTCTAGAAAGCTTGCGGCTTCCCGGGGCTCGGGCGCCTCGCACTTGG
GGAAGACGCTGCTCTCGTAGGTGGGCACCATGTACTTGATGTTGATGAAG
GCATTGGGGCCTCCGCAGTACTCCAGCAGCTTCAGGGTGTCCTCGATGAC
GTCGCCGATGCGGCAGTTTCGATCGGGATCGATACCCTCTCCCAGATTCA
CGTTGATGTTCTTGTAAAGATTGCACACGGCCAGCAACTGGCGATAGAAG
GGCACCAGGGCCTGACCCACACAGGGACCCAGTCGGACCATCAGTTGTAT
GACTTGGAGGGCGGAGATGATGATCCGCTTGTCGCGCGTCTGGAAGGCCC
GTTTCAGAGGAAGAATGAGCTTGGGCAGCACGGGTAGCACCTTTTTGGGG
GACCGCATGATGAGGTCAATGGCTCCGTTGACCGCTAGCAACCGGGTGTC
GTAGTCCATGTCCGCCAGTCCGTCCACGAAGATGGGCAGATAGTAGCAAT
AGTCGAGATTCTCCGGCACACAGTGCCACTTCACCGGACGCTCCTTGGTC
GGATCCTGTTTGCTGCTCCTGCCGGACATCACACACGGAATGTCGCCGCG
ATTGAAGTAGATCTTGAATACGGTCTCCTTCACTGGCTTCCGCTTGAAAA
TGTCGATCTTTGGAGGAGGTTTCACCACAGTATTAGGCTGCAGTGCCTGA
AAAGTGAAGGCGGGAACTTCACGTACTGGCACCTTCGACCTGAGGTACAA
CAACTCCCTGCAAACCCTTCCAGGTTCATGAAGTCAAGTGG
BO14943.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-PA | 801 | CG17349-RA | 26..798 | 791..19 | 3840 | 99.8 | Minus |
CG15120-PA | 927 | CG15120-RA | 869..909 | 104..64 | 180 | 97.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:55:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-RA | 1147 | CG17349-RA | 225..997 | 791..19 | 3850 | 99.9 | Minus |
CG15120-RA | 1070 | CG15120-RA | 919..959 | 104..64 | 190 | 97.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:55:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19370926..19371307 | 658..277 | 1910 | 100 | Minus |
2L | 23513712 | 2L | 19372301..19372561 | 279..19 | 1305 | 100 | Minus |
2L | 23513712 | 2L | 19370795..19370867 | 730..658 | 365 | 100 | Minus |
2L | 23513712 | 2L | 19370669..19370730 | 791..730 | 295 | 98.4 | Minus |
2R | 25286936 | 2R | 19500221..19500261 | 104..64 | 190 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-01-31 10:55:51 has no hits.
BO14943.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:49 Download gff for
BO14943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-PA | 26..801 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:55 Download gff for
BO14943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-PA | 26..801 | 15..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:39 Download gff for
BO14943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 225..1006 | 9..791 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:52:03 Download gff for
BO14943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 225..1006 | 9..791 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:52:03 Download gff for
BO14943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19370669..19370730 | 730..791 | 98 | -> | Minus |
2L | 19370796..19370866 | 659..729 | 100 | -> | Minus |
2L | 19370926..19371305 | 279..658 | 100 | -> | Minus |
2L | 19372302..19372570 | 9..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:39 Download gff for
BO14943.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19370669..19370730 | 730..791 | 98 | -> | Minus |
arm_2L | 19370796..19370866 | 659..729 | 100 | -> | Minus |
arm_2L | 19370926..19371305 | 279..658 | 100 | -> | Minus |
arm_2L | 19372302..19372570 | 9..278 | 98 | | Minus |
BO14943.5prime Sequence
830 bp (780 high quality bases) assembled on 2006-05-29
> BO14943.5prime
GAAGTTATCCGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGAC
TTCATGAACCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAG
GTGCCAGTACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAA
TACTGTGGTGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAG
TGAAGGAGACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGT
GTGATGTCCGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGT
GAAGTGGCACTGTGTGCCGGAGAATCTCGACTATTGCTACTATCTGCCCA
TCTTCGTGGACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCG
GTCAACGGAGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACC
CGTGCTGCCCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCG
ACAAGCGGATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGA
CTGGGTCCCTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCT
GGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTA
TCGATCCCGATCGAAACTGCCGCATCGGCGACGTCATCGAGGACACCCTG
AAGCTGCTGGACTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTA
CATGGTGCCCACCTACGAGAGCAGCGTCTTCCCCAAGTGCGAGGCGCCCG
AGCCCCGGGAAGCCGCAAGCTTTCTAGACC
BO14943.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-PA | 801 | CG17349-RA | 1..798 | 17..814 | 3965 | 99.8 | Plus |
CG15120-PA | 927 | CG15120-RA | 869..909 | 729..769 | 180 | 97.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-RA | 1147 | CG17349-RA | 200..997 | 17..814 | 3975 | 99.9 | Plus |
CG15120-RA | 1070 | CG15120-RA | 919..959 | 729..769 | 190 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19370926..19371307 | 175..556 | 1910 | 100 | Plus |
2L | 23513712 | 2L | 19372301..19372561 | 554..814 | 1290 | 99.6 | Plus |
2L | 23513712 | 2L | 19370644..19370730 | 17..103 | 435 | 100 | Plus |
2L | 23513712 | 2L | 19370795..19370867 | 103..175 | 365 | 100 | Plus |
2R | 25286936 | 2R | 19500221..19500261 | 729..769 | 190 | 97.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:46:59 has no hits.
BO14943.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:50 Download gff for
BO14943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:57 Download gff for
BO14943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:01 Download gff for
BO14943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 200..1006 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:01 Download gff for
BO14943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 200..1006 | 17..824 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:01 Download gff for
BO14943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
2L | 19372302..19372570 | 555..824 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:01 Download gff for
BO14943.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
arm_2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
arm_2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
arm_2L | 19372302..19372570 | 555..824 | 98 | | Plus |
BO14943.complete Sequence
832 bp assembled on 2007-10-17
GenBank Submission: FJ633291
> BO14943.complete
GAAGTTATCAGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGAC
TTCATGAACCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAG
GTGCCAGTACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAA
TACTGTGGTGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAG
TGAAGGAGACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGT
GTGATGTCCGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGT
GAAGTGGCACTGTGTGCCGGAGAATCTCGACTATTGCTACTATCTGCCCA
TCTTCGTGGACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCG
GTCAACGGAGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACC
CGTGCTGCCCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCG
ACAAGCGGATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGA
CTGGGTCCCTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCT
GGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTA
TCGATCCCGATCGAAACTGCCGCATCGGCGACGTCATCGAGGACACCCTG
AAGCTGCTGGAGTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTA
CATGGTGCCCACCTACGAGAGCAGCGTCTTCCCCAAGTGCGAGGCGCCCG
AGCCCCGGGAAGCCGCAAGCTTTCTAGACCAT
BO14943.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-RA | 801 | CG17349-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
CG15120-RA | 927 | CG15120-PA | 869..909 | 729..769 | 190 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-RA | 1147 | CG17349-RA | 200..997 | 17..814 | 3990 | 100 | Plus |
CG15120-RA | 1070 | CG15120-RA | 919..959 | 729..769 | 190 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19370926..19371307 | 175..556 | 1910 | 100 | Plus |
2L | 23513712 | 2L | 19372301..19372561 | 554..814 | 1305 | 100 | Plus |
2L | 23513712 | 2L | 19370644..19370730 | 17..103 | 435 | 100 | Plus |
2L | 23513712 | 2L | 19370795..19370867 | 103..175 | 365 | 100 | Plus |
2R | 25286936 | 2R | 19500221..19500261 | 729..769 | 190 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:45:48 has no hits.
BO14943.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:31 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:49 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 167..973 | 17..824 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:13 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 200..997 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:26 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 167..964 | 17..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:09 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 200..997 | 17..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:09 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
2L | 19372302..19372561 | 555..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:13 Download gff for
BO14943.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19372302..19372561 | 555..816 | 99 | | Plus |
arm_2L | 19370644..19370730 | 17..103 | 100 | -> | Plus |
arm_2L | 19370796..19370866 | 104..174 | 100 | -> | Plus |
arm_2L | 19370926..19371305 | 175..554 | 100 | -> | Plus |
BO14943.pep Sequence
Translation from 16 to 832
> BO14943.pep
MCTKTNERATRLHEPGRVCRELLYLRSKVPVREVPAFTFQALQPNTVVKP
PPKIDIFKRKPVKETVFKIYFNRGDIPCVMSGRSSKQDPTKERPVKWHCV
PENLDYCYYLPIFVDGLADMDYDTRLLAVNGAIDLIMRSPKKVLPVLPKL
ILPLKRAFQTRDKRIIISALQVIQLMVRLGPCVGQALVPFYRQLLAVCNL
YKNINVNLGEGIDPDRNCRIGDVIEDTLKLLEYCGGPNAFINIKYMVPTY
ESSVFPKCEAPEPREAASFLDH
BO14943.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-PA | 266 | CG17349-PA | 1..266 | 1..266 | 1412 | 100 | Plus |
CG15120-PA | 308 | CG15120-PA | 49..304 | 32..252 | 415 | 38.9 | Plus |