Clone BO14943 Report

Search the DGRC for BO14943

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG17349-RA
Protein status:BO14943.pep: validated full length
Sequenced Size:832

Clone Sequence Records

BO14943.3prime Sequence

791 bp (767 high quality bases) assembled on 2006-05-29

> BO14943.3prime
ATGGTCTAGAAAGCTTGCGGCTTCCCGGGGCTCGGGCGCCTCGCACTTGG
GGAAGACGCTGCTCTCGTAGGTGGGCACCATGTACTTGATGTTGATGAAG
GCATTGGGGCCTCCGCAGTACTCCAGCAGCTTCAGGGTGTCCTCGATGAC
GTCGCCGATGCGGCAGTTTCGATCGGGATCGATACCCTCTCCCAGATTCA
CGTTGATGTTCTTGTAAAGATTGCACACGGCCAGCAACTGGCGATAGAAG
GGCACCAGGGCCTGACCCACACAGGGACCCAGTCGGACCATCAGTTGTAT
GACTTGGAGGGCGGAGATGATGATCCGCTTGTCGCGCGTCTGGAAGGCCC
GTTTCAGAGGAAGAATGAGCTTGGGCAGCACGGGTAGCACCTTTTTGGGG
GACCGCATGATGAGGTCAATGGCTCCGTTGACCGCTAGCAACCGGGTGTC
GTAGTCCATGTCCGCCAGTCCGTCCACGAAGATGGGCAGATAGTAGCAAT
AGTCGAGATTCTCCGGCACACAGTGCCACTTCACCGGACGCTCCTTGGTC
GGATCCTGTTTGCTGCTCCTGCCGGACATCACACACGGAATGTCGCCGCG
ATTGAAGTAGATCTTGAATACGGTCTCCTTCACTGGCTTCCGCTTGAAAA
TGTCGATCTTTGGAGGAGGTTTCACCACAGTATTAGGCTGCAGTGCCTGA
AAAGTGAAGGCGGGAACTTCACGTACTGGCACCTTCGACCTGAGGTACAA
CAACTCCCTGCAAACCCTTCCAGGTTCATGAAGTCAAGTGG

BO14943.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-PA 801 CG17349-RA 26..798 791..19 3840 99.8 Minus
CG15120-PA 927 CG15120-RA 869..909 104..64 180 97.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 10:55:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-RA 1147 CG17349-RA 225..997 791..19 3850 99.9 Minus
CG15120-RA 1070 CG15120-RA 919..959 104..64 190 97.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 10:55:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19370926..19371307 658..277 1910 100 Minus
2L 23513712 2L 19372301..19372561 279..19 1305 100 Minus
2L 23513712 2L 19370795..19370867 730..658 365 100 Minus
2L 23513712 2L 19370669..19370730 791..730 295 98.4 Minus
2R 25286936 2R 19500221..19500261 104..64 190 97.6 Minus
Blast to na_te.dros performed on 2015-01-31 10:55:51 has no hits.

BO14943.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:49 Download gff for BO14943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-PA 26..801 15..791 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:55 Download gff for BO14943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-PA 26..801 15..791 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:44:39 Download gff for BO14943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 225..1006 9..791 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:52:03 Download gff for BO14943.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 225..1006 9..791 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:52:03 Download gff for BO14943.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19370669..19370730 730..791 98 -> Minus
2L 19370796..19370866 659..729 100 -> Minus
2L 19370926..19371305 279..658 100 -> Minus
2L 19372302..19372570 9..278 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:44:39 Download gff for BO14943.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19370669..19370730 730..791 98 -> Minus
arm_2L 19370796..19370866 659..729 100 -> Minus
arm_2L 19370926..19371305 279..658 100 -> Minus
arm_2L 19372302..19372570 9..278 98   Minus

BO14943.5prime Sequence

830 bp (780 high quality bases) assembled on 2006-05-29

> BO14943.5prime
GAAGTTATCCGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGAC
TTCATGAACCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAG
GTGCCAGTACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAA
TACTGTGGTGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAG
TGAAGGAGACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGT
GTGATGTCCGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGT
GAAGTGGCACTGTGTGCCGGAGAATCTCGACTATTGCTACTATCTGCCCA
TCTTCGTGGACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCG
GTCAACGGAGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACC
CGTGCTGCCCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCG
ACAAGCGGATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGA
CTGGGTCCCTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCT
GGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTA
TCGATCCCGATCGAAACTGCCGCATCGGCGACGTCATCGAGGACACCCTG
AAGCTGCTGGACTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTA
CATGGTGCCCACCTACGAGAGCAGCGTCTTCCCCAAGTGCGAGGCGCCCG
AGCCCCGGGAAGCCGCAAGCTTTCTAGACC

BO14943.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-PA 801 CG17349-RA 1..798 17..814 3965 99.8 Plus
CG15120-PA 927 CG15120-RA 869..909 729..769 180 97.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-RA 1147 CG17349-RA 200..997 17..814 3975 99.9 Plus
CG15120-RA 1070 CG15120-RA 919..959 729..769 190 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:46:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19370926..19371307 175..556 1910 100 Plus
2L 23513712 2L 19372301..19372561 554..814 1290 99.6 Plus
2L 23513712 2L 19370644..19370730 17..103 435 100 Plus
2L 23513712 2L 19370795..19370867 103..175 365 100 Plus
2R 25286936 2R 19500221..19500261 729..769 190 97.6 Plus
Blast to na_te.dros performed on 2015-02-12 19:46:59 has no hits.

BO14943.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:50 Download gff for BO14943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-PA 1..801 17..818 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:57 Download gff for BO14943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-PA 1..801 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:10:01 Download gff for BO14943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 200..1006 17..824 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:58:01 Download gff for BO14943.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 200..1006 17..824 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:58:01 Download gff for BO14943.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19370644..19370730 17..103 100 -> Plus
2L 19370796..19370866 104..174 100 -> Plus
2L 19370926..19371305 175..554 100 -> Plus
2L 19372302..19372570 555..824 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:10:01 Download gff for BO14943.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19370644..19370730 17..103 100 -> Plus
arm_2L 19370796..19370866 104..174 100 -> Plus
arm_2L 19370926..19371305 175..554 100 -> Plus
arm_2L 19372302..19372570 555..824 98   Plus

BO14943.complete Sequence

832 bp assembled on 2007-10-17

GenBank Submission: FJ633291

> BO14943.complete
GAAGTTATCAGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGAC
TTCATGAACCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAG
GTGCCAGTACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAA
TACTGTGGTGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAG
TGAAGGAGACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGT
GTGATGTCCGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGT
GAAGTGGCACTGTGTGCCGGAGAATCTCGACTATTGCTACTATCTGCCCA
TCTTCGTGGACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCG
GTCAACGGAGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACC
CGTGCTGCCCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCG
ACAAGCGGATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGA
CTGGGTCCCTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCT
GGCCGTGTGCAATCTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTA
TCGATCCCGATCGAAACTGCCGCATCGGCGACGTCATCGAGGACACCCTG
AAGCTGCTGGAGTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTA
CATGGTGCCCACCTACGAGAGCAGCGTCTTCCCCAAGTGCGAGGCGCCCG
AGCCCCGGGAAGCCGCAAGCTTTCTAGACCAT

BO14943.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-RA 801 CG17349-PA 1..798 17..814 3990 100 Plus
CG15120-RA 927 CG15120-PA 869..909 729..769 190 97.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:45:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-RA 1147 CG17349-RA 200..997 17..814 3990 100 Plus
CG15120-RA 1070 CG15120-RA 919..959 729..769 190 97.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:45:47
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19370926..19371307 175..556 1910 100 Plus
2L 23513712 2L 19372301..19372561 554..814 1305 100 Plus
2L 23513712 2L 19370644..19370730 17..103 435 100 Plus
2L 23513712 2L 19370795..19370867 103..175 365 100 Plus
2R 25286936 2R 19500221..19500261 729..769 190 97.6 Plus
Blast to na_te.dros performed on 2014-11-27 14:45:48 has no hits.

BO14943.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:31 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 1..801 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:49 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 167..973 17..824 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:51:13 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 200..997 17..816 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:44:26 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 167..964 17..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:18:09 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 200..997 17..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:18:09 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19370796..19370866 104..174 100 -> Plus
2L 19370644..19370730 17..103 100 -> Plus
2L 19370926..19371305 175..554 100 -> Plus
2L 19372302..19372561 555..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:51:13 Download gff for BO14943.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19372302..19372561 555..816 99   Plus
arm_2L 19370644..19370730 17..103 100 -> Plus
arm_2L 19370796..19370866 104..174 100 -> Plus
arm_2L 19370926..19371305 175..554 100 -> Plus

BO14943.pep Sequence

Translation from 16 to 832

> BO14943.pep
MCTKTNERATRLHEPGRVCRELLYLRSKVPVREVPAFTFQALQPNTVVKP
PPKIDIFKRKPVKETVFKIYFNRGDIPCVMSGRSSKQDPTKERPVKWHCV
PENLDYCYYLPIFVDGLADMDYDTRLLAVNGAIDLIMRSPKKVLPVLPKL
ILPLKRAFQTRDKRIIISALQVIQLMVRLGPCVGQALVPFYRQLLAVCNL
YKNINVNLGEGIDPDRNCRIGDVIEDTLKLLEYCGGPNAFINIKYMVPTY
ESSVFPKCEAPEPREAASFLDH

BO14943.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:51:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-PA 266 CG17349-PA 1..266 1..266 1412 100 Plus
CG15120-PA 308 CG15120-PA 49..304 32..252 415 38.9 Plus