Clone BO14944 Report

Search the DGRC for BO14944

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4e1-RA
Protein status:BO14944.pep: validated full length
Sequenced Size:1627

Clone Sequence Records

BO14944.3prime Sequence

773 bp (755 high quality bases) assembled on 2006-05-29

> BO14944.3prime
ATGGTCTAGAAAGCTTGCTGTACTATCGCATACAAGCCTCTGCTTCATGC
GTAGATGTAGACCATTTTCGGACTTCAGAGTCATGGATGCCGACAAAATT
GGATCATACTTATGGTTGTGAGCATCACGGCTCTTCTTCTCTGCCGGCTG
AAGACCTAGAGTTGTGCTTATATAGCCATCCTTGGAAACGAGCTCATCCA
GAGCTGGCAGCACCTCGAAATTTCGAATGATTTTGGACACCACAGTCTTG
ATCTCCAGCAGTGCAAACTTCTGACCAATGCAATTTCGGGGACCAGCACT
AAAGGGCACGTACTCAAACGGCCCTGGTTTCTCACGGTCGAAGCGTTCGG
GCTGGAATTTGTGAGGATCCTTAAAAACACGGTCATTGTATCCCAACATA
AGAAGGCCCAAGTTCAAGGTAGTCCCCTTCGGCACAATGTCACCATCAAT
TACGTAGTCCTTCTCAGTAAAGCGACCAATGAAAGGGACACTCGGATAAA
GACGTTGCGCCTCCTTTATAAACAAATCCAAATGTTTCATTGTGGATATC
TCCTGAAACGTGGCATCTCGACCAAGTCCAGAAGCGCCCATCACATCGCA
CTGCTCGTTAAATAATTTTTCCTGTTCATCTGGATGTCGAGAAAGTAAGT
AGACTGCAAAACCTACACCAGATGTAGTAGTGTCATGCCCTTCAAACATA
AAGGTGGAAACTTCCTCGTNAAGCTCTTGGGAAGTCAGAGGACGTCCATC
CACTTTGGATGACAGCAGAGTGT

BO14944.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG2062-PA 1596 Cyp4e1-RA 839..1593 773..19 3756 99.8 Minus
CG2060-PA 1581 Cyp4e2-RA 1279..1448 333..164 350 88.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 891..1645 773..19 3764 99.9 Minus
Cyp4e2-RB 1880 CG2060-RB 996..1609 773..160 1124 78.8 Minus
Cyp4e2-RA 1783 CG2060-RA 899..1512 773..160 1124 78.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8449190..8449618 447..19 2145 100 Minus
2R 25286936 2R 8448959..8449136 624..447 890 100 Minus
2R 25286936 2R 8448745..8448897 773..621 754 99.3 Minus
2R 25286936 2R 8446684..8446893 369..160 585 85.2 Minus
2R 25286936 2R 8446375..8446538 618..455 310 79.3 Minus
2R 25286936 2R 8446160..8446312 773..621 274 78.4 Minus
Blast to na_te.dros performed on 2015-02-10 18:40:24 has no hits.

BO14944.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:51 Download gff for BO14944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 839..1596 16..773 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:58 Download gff for BO14944.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 839..1596 16..773 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:16 Download gff for BO14944.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 891..1649 15..773 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:50 Download gff for BO14944.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 891..1649 15..773 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:50 Download gff for BO14944.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8448745..8448896 622..773 99 -> Minus
2R 8448962..8449136 447..621 100 -> Minus
2R 8449191..8449622 15..446 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:16 Download gff for BO14944.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4336250..4336401 622..773 99 -> Minus
arm_2R 4336467..4336641 447..621 100 -> Minus
arm_2R 4336696..4337127 15..446 99   Minus

BO14944.5prime Sequence

815 bp (793 high quality bases) assembled on 2006-05-29

> BO14944.5prime
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAAATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGGC
TTGAAGTCGGCATTA

BO14944.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2062-PA 1596 Cyp4e1-RA 1..799 17..815 3970 99.8 Plus
CG2060-PA 1581 Cyp4e2-RA 325..461 341..477 460 93.4 Plus
CG4105-PA 1581 Cyp4e3-RA 367..453 383..469 285 93.1 Plus
CG2060-PA 1581 Cyp4e2-RA 526..590 542..606 225 93.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..851 17..815 3980 99.9 Plus
Cyp4e2-RB 1880 CG2060-RB 272..936 131..795 1105 78.3 Plus
Cyp4e2-RA 1783 CG2060-RA 175..839 131..795 1105 78.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8448101..8448452 285..636 1760 100 Plus
2R 25286936 2R 8445532..8445883 285..636 950 84.7 Plus
2R 25286936 2R 8448527..8448705 637..815 880 99.4 Plus
2R 25286936 2R 8447503..8447662 17..176 800 100 Plus
2R 25286936 2R 8447930..8448042 174..286 565 100 Plus
2L 23513712 2L 9749185..9749442 601..344 480 79.1 Minus
Blast to na_te.dros performed 2015-02-12 05:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Tirant 8526 Tirant TIRANT 8526bp 3716..3814 670..769 118 62.7 Plus

BO14944.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:52 Download gff for BO14944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:00 Download gff for BO14944.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2062-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:05 Download gff for BO14944.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..850 9..814 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:37 Download gff for BO14944.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 45..850 9..814 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:37 Download gff for BO14944.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8447495..8447662 9..176 98 -> Plus
2R 8447933..8448042 177..286 100 -> Plus
2R 8448103..8448452 287..636 100 -> Plus
2R 8448527..8448704 637..814 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:05 Download gff for BO14944.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4335000..4335167 9..176 98 -> Plus
arm_2R 4335438..4335547 177..286 100 -> Plus
arm_2R 4335608..4335957 287..636 100 -> Plus
arm_2R 4336032..4336209 637..814 99   Plus

BO14944.complete Sequence

1627 bp assembled on 2007-10-26

GenBank Submission: FJ633292

> BO14944.complete
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGGC
TTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATTT
TTGGACACTCTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCCA
AGAGCTTTACGAGGAAGTTTCCACCTTTATGTTTGAAGGGCATGACACTA
CTACATCTGGTGTAGGTTTTGCAGTCTACTTACTTTCTCGACATCCAGAT
GAACAGGAAAAATTATTTAACGAGCAGTGCGATGTGATGGGCGCTTCTGG
ACTTGGTCGAGATGCCACGTTTCAGGAGATATCCACAATGAAACATTTGG
ATTTGTTTATAAAGGAGGCGCAACGTCTTTATCCGAGTGTCCCTTTCATT
GGTCGCTTTACTGAGAAGGACTACGTAATTGATGGTGACATTGTGCCGAA
GGGGACTACCTTGAACTTGGGCCTTCTTATGTTGGGATACAATGACCGTG
TTTTTAAGGATCCTCACAAATTCCAGCCCGAACGCTTCGACCGTGAGAAA
CCAGGGCCGTTTGAGTACGTGCCCTTTAGTGCTGGTCCCCGAAATTGCAT
TGGTCAGAAGTTTGCACTGCTGGAGATCAAGACTGTGGTGTCCAAAATCA
TTCGAAATTTCGAGGTGCTGCCAGCTCTGGATGAGCTCGTTTCCAAGGAT
GGCTATATAAGCACAACTCTAGGTCTTCAGCCGGCAGAGAAGAAGAGCCG
TGATGCTCACAACCATAAGTATGATCCAATTTTGTCGGCATCCATGACTC
TGAAGTCCGAAAATGGTCTACATCTACGCATGAAGCAGAGGCTTGTATGC
GATAGTACAGCAAGCTTTCTAGACCAT

BO14944.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1596 CG2062-PA 1..1593 17..1609 7965 100 Plus
Cyp4e2-RB 1581 CG2060-PB 115..1452 131..1468 2175 77.5 Plus
Cyp4e2-RA 1581 CG2060-PA 115..1452 131..1468 2175 77.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:24
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-RA 1772 CG2062-RA 53..1645 17..1609 7965 100 Plus
Cyp4e2-RB 1880 CG2060-RB 272..1609 131..1468 2175 77.5 Plus
Cyp4e2-RA 1783 CG2060-RA 175..1512 131..1468 2175 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8449190..8449618 1181..1609 2145 100 Plus
2R 25286936 2R 8448527..8448897 637..1007 1855 100 Plus
2R 25286936 2R 8448101..8448452 285..636 1760 100 Plus
2R 25286936 2R 8445532..8445883 285..636 950 84.7 Plus
2R 25286936 2R 8448959..8449136 1004..1181 890 100 Plus
2R 25286936 2R 8447503..8447662 17..176 800 100 Plus
2R 25286936 2R 8446684..8446893 1259..1468 585 85.2 Plus
2R 25286936 2R 8447930..8448042 174..286 565 100 Plus
2L 23513712 2L 9749185..9749442 601..344 480 79.1 Minus
2R 25286936 2R 8445948..8446312 643..1007 385 73.7 Plus
2R 25286936 2R 8446375..8446538 1010..1173 310 79.3 Plus
2L 23513712 2L 9748760..9748888 964..836 225 78.3 Minus
Blast to na_te.dros performed on 2014-11-27 16:14:22 has no hits.

BO14944.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:32 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 1..1596 17..1612 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:51 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 27..1631 9..1613 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:12 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 53..1645 17..1611 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:50 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 35..1627 17..1611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:06 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4e1-RA 53..1645 17..1611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:06 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8447503..8447662 17..176 100 -> Plus
2R 8447933..8448042 177..286 100 -> Plus
2R 8448103..8448452 287..636 100 -> Plus
2R 8448527..8448896 637..1006 100 -> Plus
2R 8448962..8449136 1007..1181 100 -> Plus
2R 8449191..8449618 1182..1611 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:12 Download gff for BO14944.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4335438..4335547 177..286 100 -> Plus
arm_2R 4335008..4335167 17..176 100 -> Plus
arm_2R 4335608..4335957 287..636 100 -> Plus
arm_2R 4336032..4336401 637..1006 100 -> Plus
arm_2R 4336467..4336641 1007..1181 100 -> Plus
arm_2R 4336696..4337123 1182..1611 99   Plus

BO14944.pep Sequence

Translation from 16 to 1627

> BO14944.pep
MWIVLCAFLALPLFLVTYFELGLLRRKRMLNKFQGPSMLPLVGNAHQMGN
TPTEILNRFFGWWHEYGKDNFRYWIGYYSNIMVTNPKYMEFILSSQTLIS
KSDVYDLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIDQLKKVADGGNIFDFQEEAHYLTLDVICDTAMGVSINAMENRSSS
VVQAFKDITYTIKMRAFSPWKRNKYLFHFAPEYPEYSKTLKTLQDFTNEI
IAKRIEVRKSGLEVGIKADEFSRKKMAFLDTLLSSKVDGRPLTSQELYEE
VSTFMFEGHDTTTSGVGFAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDA
TFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDIVPKGTTLN
LGLLMLGYNDRVFKDPHKFQPERFDREKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTLGLQPAEKKSRDAHNH
KYDPILSASMTLKSENGLHLRMKQRLVCDSTASFLDH

BO14944.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4e1-PA 531 CG2062-PA 1..531 1..531 2802 100 Plus
Cyp4e2-PB 526 CG2060-PB 1..525 1..525 2251 80.8 Plus
Cyp4e2-PA 526 CG2060-PA 1..525 1..525 2251 80.8 Plus
Cyp4e3-PA 526 CG4105-PA 1..524 1..525 1925 67.6 Plus
Cyp4d1-PA 512 CG3656-PA 1..479 1..467 894 40.6 Plus