Clone Sequence Records
BO14944.3prime Sequence
773 bp (755 high quality bases) assembled on 2006-05-29
> BO14944.3prime
ATGGTCTAGAAAGCTTGCTGTACTATCGCATACAAGCCTCTGCTTCATGC
GTAGATGTAGACCATTTTCGGACTTCAGAGTCATGGATGCCGACAAAATT
GGATCATACTTATGGTTGTGAGCATCACGGCTCTTCTTCTCTGCCGGCTG
AAGACCTAGAGTTGTGCTTATATAGCCATCCTTGGAAACGAGCTCATCCA
GAGCTGGCAGCACCTCGAAATTTCGAATGATTTTGGACACCACAGTCTTG
ATCTCCAGCAGTGCAAACTTCTGACCAATGCAATTTCGGGGACCAGCACT
AAAGGGCACGTACTCAAACGGCCCTGGTTTCTCACGGTCGAAGCGTTCGG
GCTGGAATTTGTGAGGATCCTTAAAAACACGGTCATTGTATCCCAACATA
AGAAGGCCCAAGTTCAAGGTAGTCCCCTTCGGCACAATGTCACCATCAAT
TACGTAGTCCTTCTCAGTAAAGCGACCAATGAAAGGGACACTCGGATAAA
GACGTTGCGCCTCCTTTATAAACAAATCCAAATGTTTCATTGTGGATATC
TCCTGAAACGTGGCATCTCGACCAAGTCCAGAAGCGCCCATCACATCGCA
CTGCTCGTTAAATAATTTTTCCTGTTCATCTGGATGTCGAGAAAGTAAGT
AGACTGCAAAACCTACACCAGATGTAGTAGTGTCATGCCCTTCAAACATA
AAGGTGGAAACTTCCTCGTNAAGCTCTTGGGAAGTCAGAGGACGTCCATC
CACTTTGGATGACAGCAGAGTGT
BO14944.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2062-PA | 1596 | Cyp4e1-RA | 839..1593 | 773..19 | 3756 | 99.8 | Minus |
CG2060-PA | 1581 | Cyp4e2-RA | 1279..1448 | 333..164 | 350 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:40:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 891..1645 | 773..19 | 3764 | 99.9 | Minus |
Cyp4e2-RB | 1880 | CG2060-RB | 996..1609 | 773..160 | 1124 | 78.8 | Minus |
Cyp4e2-RA | 1783 | CG2060-RA | 899..1512 | 773..160 | 1124 | 78.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:40:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8449190..8449618 | 447..19 | 2145 | 100 | Minus |
2R | 25286936 | 2R | 8448959..8449136 | 624..447 | 890 | 100 | Minus |
2R | 25286936 | 2R | 8448745..8448897 | 773..621 | 754 | 99.3 | Minus |
2R | 25286936 | 2R | 8446684..8446893 | 369..160 | 585 | 85.2 | Minus |
2R | 25286936 | 2R | 8446375..8446538 | 618..455 | 310 | 79.3 | Minus |
2R | 25286936 | 2R | 8446160..8446312 | 773..621 | 274 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:40:24 has no hits.
BO14944.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:51 Download gff for
BO14944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 839..1596 | 16..773 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:38:58 Download gff for
BO14944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 839..1596 | 16..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:16 Download gff for
BO14944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 891..1649 | 15..773 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:58:50 Download gff for
BO14944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 891..1649 | 15..773 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:58:50 Download gff for
BO14944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8448745..8448896 | 622..773 | 99 | -> | Minus |
2R | 8448962..8449136 | 447..621 | 100 | -> | Minus |
2R | 8449191..8449622 | 15..446 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:16 Download gff for
BO14944.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4336250..4336401 | 622..773 | 99 | -> | Minus |
arm_2R | 4336467..4336641 | 447..621 | 100 | -> | Minus |
arm_2R | 4336696..4337127 | 15..446 | 99 | | Minus |
BO14944.5prime Sequence
815 bp (793 high quality bases) assembled on 2006-05-29
> BO14944.5prime
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAAATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGGC
TTGAAGTCGGCATTA
BO14944.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2062-PA | 1596 | Cyp4e1-RA | 1..799 | 17..815 | 3970 | 99.8 | Plus |
CG2060-PA | 1581 | Cyp4e2-RA | 325..461 | 341..477 | 460 | 93.4 | Plus |
CG4105-PA | 1581 | Cyp4e3-RA | 367..453 | 383..469 | 285 | 93.1 | Plus |
CG2060-PA | 1581 | Cyp4e2-RA | 526..590 | 542..606 | 225 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 53..851 | 17..815 | 3980 | 99.9 | Plus |
Cyp4e2-RB | 1880 | CG2060-RB | 272..936 | 131..795 | 1105 | 78.3 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 175..839 | 131..795 | 1105 | 78.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8448101..8448452 | 285..636 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 8445532..8445883 | 285..636 | 950 | 84.7 | Plus |
2R | 25286936 | 2R | 8448527..8448705 | 637..815 | 880 | 99.4 | Plus |
2R | 25286936 | 2R | 8447503..8447662 | 17..176 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8447930..8448042 | 174..286 | 565 | 100 | Plus |
2L | 23513712 | 2L | 9749185..9749442 | 601..344 | 480 | 79.1 | Minus |
Blast to na_te.dros performed 2015-02-12 05:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tirant | 8526 | Tirant TIRANT 8526bp | 3716..3814 | 670..769 | 118 | 62.7 | Plus |
BO14944.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:52 Download gff for
BO14944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:00 Download gff for
BO14944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2062-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:56:05 Download gff for
BO14944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 45..850 | 9..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:35:37 Download gff for
BO14944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 45..850 | 9..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:35:37 Download gff for
BO14944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8447495..8447662 | 9..176 | 98 | -> | Plus |
2R | 8447933..8448042 | 177..286 | 100 | -> | Plus |
2R | 8448103..8448452 | 287..636 | 100 | -> | Plus |
2R | 8448527..8448704 | 637..814 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:56:05 Download gff for
BO14944.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4335000..4335167 | 9..176 | 98 | -> | Plus |
arm_2R | 4335438..4335547 | 177..286 | 100 | -> | Plus |
arm_2R | 4335608..4335957 | 287..636 | 100 | -> | Plus |
arm_2R | 4336032..4336209 | 637..814 | 99 | | Plus |
BO14944.complete Sequence
1627 bp assembled on 2007-10-26
GenBank Submission: FJ633292
> BO14944.complete
GAAGTTATCAGTCGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTC
CACTGTTCTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGA
ATGCTGAACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGC
TCATCAGATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCT
GGTGGCATGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTAC
TCCAATATTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAG
TCAAACTCTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGC
TGGGATTGGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGG
AAGATGATAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGA
GGTCATGAACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGG
CAGACGGAGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACT
CTGGACGTCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGA
AAACCGAAGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCA
TTAAGATGAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCAC
TTTGCTCCTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGGA
CTTTACCAATGAGATAATAGCGAAGAGAATCGAAGTCCGAAAATCAGGGC
TTGAAGTCGGCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATTT
TTGGACACTCTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCCA
AGAGCTTTACGAGGAAGTTTCCACCTTTATGTTTGAAGGGCATGACACTA
CTACATCTGGTGTAGGTTTTGCAGTCTACTTACTTTCTCGACATCCAGAT
GAACAGGAAAAATTATTTAACGAGCAGTGCGATGTGATGGGCGCTTCTGG
ACTTGGTCGAGATGCCACGTTTCAGGAGATATCCACAATGAAACATTTGG
ATTTGTTTATAAAGGAGGCGCAACGTCTTTATCCGAGTGTCCCTTTCATT
GGTCGCTTTACTGAGAAGGACTACGTAATTGATGGTGACATTGTGCCGAA
GGGGACTACCTTGAACTTGGGCCTTCTTATGTTGGGATACAATGACCGTG
TTTTTAAGGATCCTCACAAATTCCAGCCCGAACGCTTCGACCGTGAGAAA
CCAGGGCCGTTTGAGTACGTGCCCTTTAGTGCTGGTCCCCGAAATTGCAT
TGGTCAGAAGTTTGCACTGCTGGAGATCAAGACTGTGGTGTCCAAAATCA
TTCGAAATTTCGAGGTGCTGCCAGCTCTGGATGAGCTCGTTTCCAAGGAT
GGCTATATAAGCACAACTCTAGGTCTTCAGCCGGCAGAGAAGAAGAGCCG
TGATGCTCACAACCATAAGTATGATCCAATTTTGTCGGCATCCATGACTC
TGAAGTCCGAAAATGGTCTACATCTACGCATGAAGCAGAGGCTTGTATGC
GATAGTACAGCAAGCTTTCTAGACCAT
BO14944.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:14:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1596 | CG2062-PA | 1..1593 | 17..1609 | 7965 | 100 | Plus |
Cyp4e2-RB | 1581 | CG2060-PB | 115..1452 | 131..1468 | 2175 | 77.5 | Plus |
Cyp4e2-RA | 1581 | CG2060-PA | 115..1452 | 131..1468 | 2175 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:14:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-RA | 1772 | CG2062-RA | 53..1645 | 17..1609 | 7965 | 100 | Plus |
Cyp4e2-RB | 1880 | CG2060-RB | 272..1609 | 131..1468 | 2175 | 77.5 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 175..1512 | 131..1468 | 2175 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:14:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8449190..8449618 | 1181..1609 | 2145 | 100 | Plus |
2R | 25286936 | 2R | 8448527..8448897 | 637..1007 | 1855 | 100 | Plus |
2R | 25286936 | 2R | 8448101..8448452 | 285..636 | 1760 | 100 | Plus |
2R | 25286936 | 2R | 8445532..8445883 | 285..636 | 950 | 84.7 | Plus |
2R | 25286936 | 2R | 8448959..8449136 | 1004..1181 | 890 | 100 | Plus |
2R | 25286936 | 2R | 8447503..8447662 | 17..176 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8446684..8446893 | 1259..1468 | 585 | 85.2 | Plus |
2R | 25286936 | 2R | 8447930..8448042 | 174..286 | 565 | 100 | Plus |
2L | 23513712 | 2L | 9749185..9749442 | 601..344 | 480 | 79.1 | Minus |
2R | 25286936 | 2R | 8445948..8446312 | 643..1007 | 385 | 73.7 | Plus |
2R | 25286936 | 2R | 8446375..8446538 | 1010..1173 | 310 | 79.3 | Plus |
2L | 23513712 | 2L | 9748760..9748888 | 964..836 | 225 | 78.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:14:22 has no hits.
BO14944.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:32 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 1..1596 | 17..1612 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:51 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 27..1631 | 9..1613 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:12 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 53..1645 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:48:50 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 35..1627 | 17..1611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:06 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e1-RA | 53..1645 | 17..1611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:06 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8447503..8447662 | 17..176 | 100 | -> | Plus |
2R | 8447933..8448042 | 177..286 | 100 | -> | Plus |
2R | 8448103..8448452 | 287..636 | 100 | -> | Plus |
2R | 8448527..8448896 | 637..1006 | 100 | -> | Plus |
2R | 8448962..8449136 | 1007..1181 | 100 | -> | Plus |
2R | 8449191..8449618 | 1182..1611 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:12 Download gff for
BO14944.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4335438..4335547 | 177..286 | 100 | -> | Plus |
arm_2R | 4335008..4335167 | 17..176 | 100 | -> | Plus |
arm_2R | 4335608..4335957 | 287..636 | 100 | -> | Plus |
arm_2R | 4336032..4336401 | 637..1006 | 100 | -> | Plus |
arm_2R | 4336467..4336641 | 1007..1181 | 100 | -> | Plus |
arm_2R | 4336696..4337123 | 1182..1611 | 99 | | Plus |
BO14944.pep Sequence
Translation from 16 to 1627
> BO14944.pep
MWIVLCAFLALPLFLVTYFELGLLRRKRMLNKFQGPSMLPLVGNAHQMGN
TPTEILNRFFGWWHEYGKDNFRYWIGYYSNIMVTNPKYMEFILSSQTLIS
KSDVYDLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIDQLKKVADGGNIFDFQEEAHYLTLDVICDTAMGVSINAMENRSSS
VVQAFKDITYTIKMRAFSPWKRNKYLFHFAPEYPEYSKTLKTLQDFTNEI
IAKRIEVRKSGLEVGIKADEFSRKKMAFLDTLLSSKVDGRPLTSQELYEE
VSTFMFEGHDTTTSGVGFAVYLLSRHPDEQEKLFNEQCDVMGASGLGRDA
TFQEISTMKHLDLFIKEAQRLYPSVPFIGRFTEKDYVIDGDIVPKGTTLN
LGLLMLGYNDRVFKDPHKFQPERFDREKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTLGLQPAEKKSRDAHNH
KYDPILSASMTLKSENGLHLRMKQRLVCDSTASFLDH
BO14944.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:28:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e1-PA | 531 | CG2062-PA | 1..531 | 1..531 | 2802 | 100 | Plus |
Cyp4e2-PB | 526 | CG2060-PB | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e2-PA | 526 | CG2060-PA | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e3-PA | 526 | CG4105-PA | 1..524 | 1..525 | 1925 | 67.6 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 1..479 | 1..467 | 894 | 40.6 | Plus |