Clone BO14946 Report

Search the DGRC for BO14946

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG1213-RA
Protein status:BO14946.pep: Imported from assembly
Sequenced Size:1507

Clone Sequence Records

BO14946.3prime Sequence

802 bp (751 high quality bases) assembled on 2006-05-29

> BO14946.3prime
ATGGTCTAGAAAGCTTGCGTTACGCTTGCCATTGAGGCGATCCTGGATCT
GCTGCAAACTAAGCCCCTTTGTCTCCATCACCACGAAGAGGACGAAGAAG
AAGGCCACCACCATGCAGACAGCGAAGAGCCAGAAGGCATAGTAGGAGCC
CAAGGCATCTAGGCTGGGATAGAAGAAGGTGACCAGGAAGCCGAGGGTCC
AACAGGTGCTTGCAACAACCGAGGAGGCCACCGACTTTATGTTCGCCGGG
AACATCTCCCCGAGAACAGCCCACGGCAGCGGTCCGAATCCCGTGCAGTA
CACGATGTTGTAGATGATCAGAGCAGGAACTGGCATCCAGACCACACTGG
AGATGTCTCCCTTGACCAGCTGCATGTAGAAGAATGCTCCCAGGGCCGCA
AGCCCAATGGACATCACACTGGAGGACGTCAGCAGCATCACCTTCCTGCC
AAGGCGATCGGCCACCAGAGGCGTCAGTGCCGAGGATCCCACCTGGACAC
ATCCGATTATGATGGTGGCAATCGCCGGATCCAGCCCAGTGTTGGCACTG
GCGAAGATAGACTGGCTGTTGAAGAGGACCACATTGATGCCGGACAGCTG
CTGGAAGGAGATCAGGCCAGCGCAGATGAACAAGGCCCTGCGATTGCCGG
CATTCTTGAACAAATCCATCACTGTGCCCTTGCTGGCCATCGCCTCCTCT
ACATTGGCCTGGATCTCGGCCATCTCGTCGTGCACGCCCTCGGCACTCTG
GCCCCGAAGGAACTGCAGCGACTTCAGTGCCTCCGACTTTCGACTTTTCC
GG

BO14946.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-PA 1476 CG1213-RA 698..1473 794..19 3880 100 Minus
CG1213-PC 1476 CG1213-RC 698..1473 794..19 3880 100 Minus
CG1213-PB 1476 CG1213-RB 698..1473 794..19 3880 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-RD 1862 CG1213-RD 918..1702 802..19 3900 99.9 Minus
CG1213-RB 1862 CG1213-RB 918..1702 802..19 3900 99.9 Minus
CG1213-RC 2092 CG1213-RC 1148..1932 802..19 3900 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5845629..5846408 798..19 3885 99.9 Minus
Blast to na_te.dros performed 2015-02-02 19:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 537..618 51..132 130 65.1 Plus

BO14946.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:56 Download gff for BO14946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-PA 689..1476 18..802 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:04 Download gff for BO14946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-PB 689..1476 18..802 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:57 Download gff for BO14946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-RC 1148..1932 19..802 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:51 Download gff for BO14946.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-RC 1148..1932 19..802 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:51 Download gff for BO14946.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5845624..5846408 19..802 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:57 Download gff for BO14946.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1671346..1672130 19..802 99   Minus

BO14946.5prime Sequence

755 bp (686 high quality bases) assembled on 2006-05-29

> BO14946.5prime
GAAGTTATCAGTCGACATGCCCTCAATAAGCCGGGAGGAGGAGACCGGAG
TACAGTACTCCTACACGGAAGTCAGTACGTTCCAGATAAGAGAAGGAAAC
ACTCGAACGATGTCACCCGAACCGGTCAAGTCCGGTCGCATTTTTATGGC
TGCCGTGGCAGCCAACTTGTCCGCCTTTGTGGTGGGAACCACCCTAGGCT
GGACCTCCCCCATCGGGCCCAAGCTCAAGTCCGAGGACACCTCAGACTCG
CCGCTGAGCCGGCCCATAACTTCCGATGAAGATGCCTGGATTTCATCATT
GATTGCCGTCGGAGCTCTGGTGGCTCCATTTGTGGCCGGTCCGATGGCTG
ATCGCATTGGCAGAAAGTGGGTGCTCCTCTCCAGCAGTCTGTTCTTCGTC
CTGGCTTTCGGCCTAAATATGGTGGCCTCCGAGGTGTGGATTCTGTACAT
GTCCCGCCTCATCCAGGGATTTGGCGTCGGCTTCGTGATGACCGTGCAGC
CCATGTATGTGGGTGAGATTTCCACGGACAATGTGCGCGGAGCCACCGGA
TCCTTGATGCAGCTCTTCATTGTGGGTGGCATTCTGTACGTCTATGCCAT
TGGACCGTATGTTTCATACCAGGCTCTACAGTGGTGTTGCATTGTGGTGC
CCGTAGTGTTCGACTTGGTCTTCTACATGATGCCCGAGAGTCCGTACTTC
TTCGCCGGAAAAGGTCGAAAGTCGGAGGCACTGAAGTCGCTGCAGTTCCC
TTCGG

BO14946.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-PA 1476 CG1213-RA 1..733 17..749 3665 100 Plus
CG1213-PC 1476 CG1213-RC 1..733 17..749 3665 100 Plus
CG1213-PB 1476 CG1213-RB 1..733 17..749 3665 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-RD 1862 CG1213-RD 230..967 17..755 3670 99.9 Plus
CG1213-RB 1862 CG1213-RB 230..967 17..755 3670 99.9 Plus
CG1213-RC 2092 CG1213-RC 460..1197 17..755 3670 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5845007..5845424 160..577 2090 100 Plus
3R 32079331 3R 5845494..5845668 575..749 875 100 Plus
3R 32079331 3R 5844559..5844703 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:37:12 has no hits.

BO14946.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:57 Download gff for BO14946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-PA 1..738 17..755 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:05 Download gff for BO14946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-PB 1..738 17..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:18 Download gff for BO14946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-RC 452..1197 8..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:34 Download gff for BO14946.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1213-RC 452..1197 8..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:34 Download gff for BO14946.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5844551..5844703 8..161 97 -> Plus
3R 5845009..5845422 162..575 100 -> Plus
3R 5845495..5845673 576..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:18 Download gff for BO14946.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1670273..1670425 8..161 97 -> Plus
arm_3R 1670731..1671144 162..575 100 -> Plus
arm_3R 1671217..1671395 576..755 99   Plus

BO14946.complete Sequence

1507 bp assembled on 2008-08-14

GenBank Submission: FJ638736

> BO14946.complete
GAAGTTATCAGTCGACATGCCCTCAATAAGCCGGGAGGAGGAGACCGGAG
TACAGTACTCCTACACGGAAGTCAGTACGTTCCAGATAAGAGAAGGAAAC
ACTCGAACGATGTCACCCGAACCGGTCAAGTCCGGTCGCATTTTTATGGC
TGCCGTGGCAGCCAACTTGTCCGCCTTTGTGGTGGGAACCACCCTAGGCT
GGACCTCCCCCATCGGGCCCAAGCTCAAGTCCGAGGACACCTCAGACTCG
CCGCTGAGCCGGCCCATAACTTCCGATGAAGATGCCTGGATTTCATCATT
GATTGCCGTCGGAGCTCTGGTGGCTCCATTTGTGGCCGGTCCGATGGCTG
ATCGCATTGGCAGAAAGTGGGTGCTCCTCTCCAGCAGTCTGTTCTTCGTC
CTGGCTTTCGGCCTAAATATGGTGGCCTCCGAGGTGTGGATTCTGTACAT
GTCCCGCCTCATCCAGGGATTTGGCGTCGGCTTCGTGATGACCGTGCAGC
CCATGTATGTGGGTGAGATTTCCACGGACAATGTGCGCGGAGCCACCGGA
TCCTTGATGCAGCTCTTCATTGTGGGTGGCATTCTGTACGTCTATGCCAT
TGGACCGTATGTTTCATACCAGGCTCTACAGTGGTGTTGCATTGTGGTGC
CCGTAGTGTTCGACTTGGTCTTCTACATGATGCCCGAGAGTCCGTACTTC
TTCGCCGGAAAAGGTCGAAAGTCGGAGGCACTGAAGTCGCTGCAGTTCCT
TCGGGGCCAGAGTGCCGAGGGCGTGCACGACGAGATGGCCGAGATCCAGG
CCAATGTAGAGGAGGCGATGGCCAGCAAGGGCACAGTGATGGATTTGTTC
AAGAATGCCGGCAATCGCAGGGCCTTGTTCATCTGCGCTGGCCTGATCTC
CTTCCAGCAGCTGTCCGGCATCAATGTGGTCCTCTTCAACAGCCAGTCTA
TCTTCGCCAGTGCCAACACTGGGCTGGATCCGGCGATTGCCACCATCATA
ATCGGATGTGTCCAGGTGGGATCCTCGGCACTGACGCCTCTGGTGGCCGA
TCGCCTTGGCAGGAAGGTGATGCTGCTGACGTCCTCCAGTGTGATGTCCA
TTGGGCTTGCGGCCCTGGGAGCATTCTTCTACATGCAGCTGGTCAAGGGA
GACATCTCCAGTGTGGTCTGGATGCCAGTTCCTGCTCTGATCATCTACAA
CATCGTGTACTGCACGGGATTCGGACCGCTGCCGTGGGCTGTTCTCGGGG
AGATGTTCCCGGCGAACATAAAGTCGGTGGCCTCCTCGGTTGTTGCAAGC
ACCTGTTGGACCCTCGGCTTCCTGGTCACCTTCTTCTATCCCAGCCTAGA
TGCCTTGGGCTCCTACTATGCCTTCTGGCTCTTCGCTGTCTGCATGGTGG
TGGCCTTCTTCTTCGTCCTCTTCGTGGTGATGGAGACAAAGGGGCTTAGT
TTGCAGCAGATCCAGGATCGCCTCAATGGCAAGCGTAACGCAAGCTTTCT
AGACCAT

BO14946.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-RD 1476 CG1213-PD 1..1473 17..1489 7365 100 Plus
CG1213-RB 1476 CG1213-PB 1..1473 17..1489 7365 100 Plus
CG1213-RC 1476 CG1213-PC 1..1473 17..1489 7365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-RD 1862 CG1213-RD 230..1702 17..1489 7365 100 Plus
CG1213-RB 1862 CG1213-RB 230..1702 17..1489 7365 100 Plus
CG1213-RC 2092 CG1213-RC 460..1932 17..1489 7365 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5845494..5846408 575..1489 4575 100 Plus
3R 32079331 3R 5845007..5845424 160..577 2090 100 Plus
3R 32079331 3R 5844559..5844703 17..161 725 100 Plus
Blast to na_te.dros performed 2014-11-27 01:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 537..618 1457..1376 130 65.1 Minus

BO14946.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:43 Download gff for BO14946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1213-RB 206..1686 8..1489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:52 Download gff for BO14946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1213-RC 460..1932 17..1491 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:13 Download gff for BO14946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1213-RB 214..1686 17..1491 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:08 Download gff for BO14946.complete
Subject Subject Range Query Range Percent Splice Strand
CG1213-RC 460..1932 17..1491 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:08 Download gff for BO14946.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5844559..5844703 17..161 100 -> Plus
3R 5845009..5845422 162..575 100 -> Plus
3R 5845495..5846408 576..1491 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:52 Download gff for BO14946.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1670281..1670425 17..161 100 -> Plus
arm_3R 1670731..1671144 162..575 100 -> Plus
arm_3R 1671217..1672130 576..1491 99   Plus

BO14946.pep Sequence

Translation from 16 to 1507

> BO14946.pep
MPSISREEETGVQYSYTEVSTFQIREGNTRTMSPEPVKSGRIFMAAVAAN
LSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGA
LVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQ
GFGVGFVMTVQPMYVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVS
YQALQWCCIVVPVVFDLVFYMMPESPYFFAGKGRKSEALKSLQFLRGQSA
EGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRALFICAGLISFQQLS
GINVVLFNSQSIFASANTGLDPAIATIIIGCVQVGSSALTPLVADRLGRK
VMLLTSSSVMSIGLAALGAFFYMQLVKGDISSVVWMPVPALIIYNIVYCT
GFGPLPWAVLGEMFPANIKSVASSVVASTCWTLGFLVTFFYPSLDALGSY
YAFWLFAVCMVVAFFFVLFVVMETKGLSLQQIQDRLNGKRNASFLDH

BO14946.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1213-PD 491 CG1213-PD 1..491 1..491 2496 100 Plus
CG1213-PB 491 CG1213-PB 1..491 1..491 2496 100 Plus
CG1213-PC 491 CG1213-PC 1..491 1..491 2496 100 Plus
CG1213-PA 491 CG1213-PA 1..491 1..491 2496 100 Plus
CG10960-PA 471 CG10960-PA 16..462 43..491 823 39.7 Plus