Clone Sequence Records
BO14946.3prime Sequence
802 bp (751 high quality bases) assembled on 2006-05-29
> BO14946.3prime
ATGGTCTAGAAAGCTTGCGTTACGCTTGCCATTGAGGCGATCCTGGATCT
GCTGCAAACTAAGCCCCTTTGTCTCCATCACCACGAAGAGGACGAAGAAG
AAGGCCACCACCATGCAGACAGCGAAGAGCCAGAAGGCATAGTAGGAGCC
CAAGGCATCTAGGCTGGGATAGAAGAAGGTGACCAGGAAGCCGAGGGTCC
AACAGGTGCTTGCAACAACCGAGGAGGCCACCGACTTTATGTTCGCCGGG
AACATCTCCCCGAGAACAGCCCACGGCAGCGGTCCGAATCCCGTGCAGTA
CACGATGTTGTAGATGATCAGAGCAGGAACTGGCATCCAGACCACACTGG
AGATGTCTCCCTTGACCAGCTGCATGTAGAAGAATGCTCCCAGGGCCGCA
AGCCCAATGGACATCACACTGGAGGACGTCAGCAGCATCACCTTCCTGCC
AAGGCGATCGGCCACCAGAGGCGTCAGTGCCGAGGATCCCACCTGGACAC
ATCCGATTATGATGGTGGCAATCGCCGGATCCAGCCCAGTGTTGGCACTG
GCGAAGATAGACTGGCTGTTGAAGAGGACCACATTGATGCCGGACAGCTG
CTGGAAGGAGATCAGGCCAGCGCAGATGAACAAGGCCCTGCGATTGCCGG
CATTCTTGAACAAATCCATCACTGTGCCCTTGCTGGCCATCGCCTCCTCT
ACATTGGCCTGGATCTCGGCCATCTCGTCGTGCACGCCCTCGGCACTCTG
GCCCCGAAGGAACTGCAGCGACTTCAGTGCCTCCGACTTTCGACTTTTCC
GG
BO14946.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-PA | 1476 | CG1213-RA | 698..1473 | 794..19 | 3880 | 100 | Minus |
CG1213-PC | 1476 | CG1213-RC | 698..1473 | 794..19 | 3880 | 100 | Minus |
CG1213-PB | 1476 | CG1213-RB | 698..1473 | 794..19 | 3880 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:10:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-RD | 1862 | CG1213-RD | 918..1702 | 802..19 | 3900 | 99.9 | Minus |
CG1213-RB | 1862 | CG1213-RB | 918..1702 | 802..19 | 3900 | 99.9 | Minus |
CG1213-RC | 2092 | CG1213-RC | 1148..1932 | 802..19 | 3900 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:10:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5845629..5846408 | 798..19 | 3885 | 99.9 | Minus |
Blast to na_te.dros performed 2015-02-02 19:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 537..618 | 51..132 | 130 | 65.1 | Plus |
BO14946.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:56 Download gff for
BO14946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-PA | 689..1476 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:04 Download gff for
BO14946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-PB | 689..1476 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 15:51:57 Download gff for
BO14946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RC | 1148..1932 | 19..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:51 Download gff for
BO14946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RC | 1148..1932 | 19..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:51 Download gff for
BO14946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5845624..5846408 | 19..802 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 15:51:57 Download gff for
BO14946.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1671346..1672130 | 19..802 | 99 | | Minus |
BO14946.5prime Sequence
755 bp (686 high quality bases) assembled on 2006-05-29
> BO14946.5prime
GAAGTTATCAGTCGACATGCCCTCAATAAGCCGGGAGGAGGAGACCGGAG
TACAGTACTCCTACACGGAAGTCAGTACGTTCCAGATAAGAGAAGGAAAC
ACTCGAACGATGTCACCCGAACCGGTCAAGTCCGGTCGCATTTTTATGGC
TGCCGTGGCAGCCAACTTGTCCGCCTTTGTGGTGGGAACCACCCTAGGCT
GGACCTCCCCCATCGGGCCCAAGCTCAAGTCCGAGGACACCTCAGACTCG
CCGCTGAGCCGGCCCATAACTTCCGATGAAGATGCCTGGATTTCATCATT
GATTGCCGTCGGAGCTCTGGTGGCTCCATTTGTGGCCGGTCCGATGGCTG
ATCGCATTGGCAGAAAGTGGGTGCTCCTCTCCAGCAGTCTGTTCTTCGTC
CTGGCTTTCGGCCTAAATATGGTGGCCTCCGAGGTGTGGATTCTGTACAT
GTCCCGCCTCATCCAGGGATTTGGCGTCGGCTTCGTGATGACCGTGCAGC
CCATGTATGTGGGTGAGATTTCCACGGACAATGTGCGCGGAGCCACCGGA
TCCTTGATGCAGCTCTTCATTGTGGGTGGCATTCTGTACGTCTATGCCAT
TGGACCGTATGTTTCATACCAGGCTCTACAGTGGTGTTGCATTGTGGTGC
CCGTAGTGTTCGACTTGGTCTTCTACATGATGCCCGAGAGTCCGTACTTC
TTCGCCGGAAAAGGTCGAAAGTCGGAGGCACTGAAGTCGCTGCAGTTCCC
TTCGG
BO14946.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-PA | 1476 | CG1213-RA | 1..733 | 17..749 | 3665 | 100 | Plus |
CG1213-PC | 1476 | CG1213-RC | 1..733 | 17..749 | 3665 | 100 | Plus |
CG1213-PB | 1476 | CG1213-RB | 1..733 | 17..749 | 3665 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-RD | 1862 | CG1213-RD | 230..967 | 17..755 | 3670 | 99.9 | Plus |
CG1213-RB | 1862 | CG1213-RB | 230..967 | 17..755 | 3670 | 99.9 | Plus |
CG1213-RC | 2092 | CG1213-RC | 460..1197 | 17..755 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5845007..5845424 | 160..577 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 5845494..5845668 | 575..749 | 875 | 100 | Plus |
3R | 32079331 | 3R | 5844559..5844703 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:37:12 has no hits.
BO14946.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:57 Download gff for
BO14946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-PA | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:05 Download gff for
BO14946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-PB | 1..738 | 17..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:02:18 Download gff for
BO14946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RC | 452..1197 | 8..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:34 Download gff for
BO14946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RC | 452..1197 | 8..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:34 Download gff for
BO14946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5844551..5844703 | 8..161 | 97 | -> | Plus |
3R | 5845009..5845422 | 162..575 | 100 | -> | Plus |
3R | 5845495..5845673 | 576..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:02:18 Download gff for
BO14946.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1670273..1670425 | 8..161 | 97 | -> | Plus |
arm_3R | 1670731..1671144 | 162..575 | 100 | -> | Plus |
arm_3R | 1671217..1671395 | 576..755 | 99 | | Plus |
BO14946.complete Sequence
1507 bp assembled on 2008-08-14
GenBank Submission: FJ638736
> BO14946.complete
GAAGTTATCAGTCGACATGCCCTCAATAAGCCGGGAGGAGGAGACCGGAG
TACAGTACTCCTACACGGAAGTCAGTACGTTCCAGATAAGAGAAGGAAAC
ACTCGAACGATGTCACCCGAACCGGTCAAGTCCGGTCGCATTTTTATGGC
TGCCGTGGCAGCCAACTTGTCCGCCTTTGTGGTGGGAACCACCCTAGGCT
GGACCTCCCCCATCGGGCCCAAGCTCAAGTCCGAGGACACCTCAGACTCG
CCGCTGAGCCGGCCCATAACTTCCGATGAAGATGCCTGGATTTCATCATT
GATTGCCGTCGGAGCTCTGGTGGCTCCATTTGTGGCCGGTCCGATGGCTG
ATCGCATTGGCAGAAAGTGGGTGCTCCTCTCCAGCAGTCTGTTCTTCGTC
CTGGCTTTCGGCCTAAATATGGTGGCCTCCGAGGTGTGGATTCTGTACAT
GTCCCGCCTCATCCAGGGATTTGGCGTCGGCTTCGTGATGACCGTGCAGC
CCATGTATGTGGGTGAGATTTCCACGGACAATGTGCGCGGAGCCACCGGA
TCCTTGATGCAGCTCTTCATTGTGGGTGGCATTCTGTACGTCTATGCCAT
TGGACCGTATGTTTCATACCAGGCTCTACAGTGGTGTTGCATTGTGGTGC
CCGTAGTGTTCGACTTGGTCTTCTACATGATGCCCGAGAGTCCGTACTTC
TTCGCCGGAAAAGGTCGAAAGTCGGAGGCACTGAAGTCGCTGCAGTTCCT
TCGGGGCCAGAGTGCCGAGGGCGTGCACGACGAGATGGCCGAGATCCAGG
CCAATGTAGAGGAGGCGATGGCCAGCAAGGGCACAGTGATGGATTTGTTC
AAGAATGCCGGCAATCGCAGGGCCTTGTTCATCTGCGCTGGCCTGATCTC
CTTCCAGCAGCTGTCCGGCATCAATGTGGTCCTCTTCAACAGCCAGTCTA
TCTTCGCCAGTGCCAACACTGGGCTGGATCCGGCGATTGCCACCATCATA
ATCGGATGTGTCCAGGTGGGATCCTCGGCACTGACGCCTCTGGTGGCCGA
TCGCCTTGGCAGGAAGGTGATGCTGCTGACGTCCTCCAGTGTGATGTCCA
TTGGGCTTGCGGCCCTGGGAGCATTCTTCTACATGCAGCTGGTCAAGGGA
GACATCTCCAGTGTGGTCTGGATGCCAGTTCCTGCTCTGATCATCTACAA
CATCGTGTACTGCACGGGATTCGGACCGCTGCCGTGGGCTGTTCTCGGGG
AGATGTTCCCGGCGAACATAAAGTCGGTGGCCTCCTCGGTTGTTGCAAGC
ACCTGTTGGACCCTCGGCTTCCTGGTCACCTTCTTCTATCCCAGCCTAGA
TGCCTTGGGCTCCTACTATGCCTTCTGGCTCTTCGCTGTCTGCATGGTGG
TGGCCTTCTTCTTCGTCCTCTTCGTGGTGATGGAGACAAAGGGGCTTAGT
TTGCAGCAGATCCAGGATCGCCTCAATGGCAAGCGTAACGCAAGCTTTCT
AGACCAT
BO14946.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-RD | 1476 | CG1213-PD | 1..1473 | 17..1489 | 7365 | 100 | Plus |
CG1213-RB | 1476 | CG1213-PB | 1..1473 | 17..1489 | 7365 | 100 | Plus |
CG1213-RC | 1476 | CG1213-PC | 1..1473 | 17..1489 | 7365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:18:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-RD | 1862 | CG1213-RD | 230..1702 | 17..1489 | 7365 | 100 | Plus |
CG1213-RB | 1862 | CG1213-RB | 230..1702 | 17..1489 | 7365 | 100 | Plus |
CG1213-RC | 2092 | CG1213-RC | 460..1932 | 17..1489 | 7365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5845494..5846408 | 575..1489 | 4575 | 100 | Plus |
3R | 32079331 | 3R | 5845007..5845424 | 160..577 | 2090 | 100 | Plus |
3R | 32079331 | 3R | 5844559..5844703 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 01:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
G-element | 4346 | G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). | 537..618 | 1457..1376 | 130 | 65.1 | Minus |
BO14946.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:43 Download gff for
BO14946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RB | 206..1686 | 8..1489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:52 Download gff for
BO14946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RC | 460..1932 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:09:13 Download gff for
BO14946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RB | 214..1686 | 17..1491 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:23:08 Download gff for
BO14946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1213-RC | 460..1932 | 17..1491 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:23:08 Download gff for
BO14946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5844559..5844703 | 17..161 | 100 | -> | Plus |
3R | 5845009..5845422 | 162..575 | 100 | -> | Plus |
3R | 5845495..5846408 | 576..1491 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:52 Download gff for
BO14946.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1670281..1670425 | 17..161 | 100 | -> | Plus |
arm_3R | 1670731..1671144 | 162..575 | 100 | -> | Plus |
arm_3R | 1671217..1672130 | 576..1491 | 99 | | Plus |
BO14946.pep Sequence
Translation from 16 to 1507
> BO14946.pep
MPSISREEETGVQYSYTEVSTFQIREGNTRTMSPEPVKSGRIFMAAVAAN
LSAFVVGTTLGWTSPIGPKLKSEDTSDSPLSRPITSDEDAWISSLIAVGA
LVAPFVAGPMADRIGRKWVLLSSSLFFVLAFGLNMVASEVWILYMSRLIQ
GFGVGFVMTVQPMYVGEISTDNVRGATGSLMQLFIVGGILYVYAIGPYVS
YQALQWCCIVVPVVFDLVFYMMPESPYFFAGKGRKSEALKSLQFLRGQSA
EGVHDEMAEIQANVEEAMASKGTVMDLFKNAGNRRALFICAGLISFQQLS
GINVVLFNSQSIFASANTGLDPAIATIIIGCVQVGSSALTPLVADRLGRK
VMLLTSSSVMSIGLAALGAFFYMQLVKGDISSVVWMPVPALIIYNIVYCT
GFGPLPWAVLGEMFPANIKSVASSVVASTCWTLGFLVTFFYPSLDALGSY
YAFWLFAVCMVVAFFFVLFVVMETKGLSLQQIQDRLNGKRNASFLDH
BO14946.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1213-PD | 491 | CG1213-PD | 1..491 | 1..491 | 2496 | 100 | Plus |
CG1213-PB | 491 | CG1213-PB | 1..491 | 1..491 | 2496 | 100 | Plus |
CG1213-PC | 491 | CG1213-PC | 1..491 | 1..491 | 2496 | 100 | Plus |
CG1213-PA | 491 | CG1213-PA | 1..491 | 1..491 | 2496 | 100 | Plus |
CG10960-PA | 471 | CG10960-PA | 16..462 | 43..491 | 823 | 39.7 | Plus |