Clone Sequence Records
BO14947.5prime Sequence
886 bp (804 high quality bases) assembled on 2006-05-29
> BO14947.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACACGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACTGGCCATCGGCCTGAAATGC
BO14947.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-PA | 1026 | CG16826-RA | 1..866 | 17..882 | 4305 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:01:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1248 | CG16826-RB | 25..890 | 17..882 | 4315 | 99.9 | Plus |
CG16826-RA | 1187 | CG16826-RA | 25..890 | 17..882 | 4315 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:01:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13347797..13348662 | 17..882 | 4315 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 08:01:32 has no hits.
BO14947.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:57 Download gff for
BO14947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-PA | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:07 Download gff for
BO14947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-PA | 1..869 | 17..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:03 Download gff for
BO14947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 1..875 | 13..886 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:16:53 Download gff for
BO14947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 20..893 | 13..886 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:16:53 Download gff for
BO14947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13347792..13348665 | 13..886 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:03 Download gff for
BO14947.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13347792..13348665 | 13..886 | 99 | | Plus |
BO14947.complete Sequence
1057 bp assembled on 2008-08-14
GenBank Submission: FJ633293
> BO14947.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACGCGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGG
CCAGACCCTGGCCGAGCACGAGCTGGAGAAGCCCAGCGTGGAGCGCAAGC
TGGATGAGATCATTGCGGAGTACCAGGAGCAGCAGACTTCCACCGATGAC
GACTCTAGCTCTAATAATGAAACGACCACCATAAGTTCGGCAAGCTTTCT
AGACCAT
BO14947.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1026 | CG16826-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG16826-RA | 1026 | CG16826-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-RB | 1248 | CG16826-RB | 25..1047 | 17..1039 | 5115 | 100 | Plus |
CG16826-RA | 1187 | CG16826-RA | 25..1047 | 17..1039 | 5115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13347797..13348819 | 17..1039 | 5115 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:08:19 has no hits.
BO14947.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:13 Download gff for
BO14947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 2..1038 | 13..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:30 Download gff for
BO14947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 7..1029 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:07 Download gff for
BO14947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 7..1029 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:45 Download gff for
BO14947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG16826-RA | 25..1047 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:45 Download gff for
BO14947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13347797..13348819 | 17..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:30 Download gff for
BO14947.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13347797..13348819 | 17..1041 | 99 | | Plus |
BO14947.pep Sequence
Translation from 16 to 1057
> BO14947.pep
MHSTKSAVLLLALAISASCVVATPHPEFLDEIFGSINQTGQHIISGFVNA
TRNGTAIAGEFLDSIRNSSAQYTHETLEFAQKIADAVHRAATESIVDFSA
TLRAQIDALHQGIDRVRNILQREALKDALARLQTVNTVVNDLEVAVNNLN
DRIDEKKQEYFAIIQKKWYQWSDAQLERVDKLTNGVGNEEAEEIINELLS
RYSGYLHSCLEELQAQQATFEQNVQEAIEKYHNATNELTDQVELCVQFNL
SFLSCRNGINEALRGLDSAPAELLTLKLQGIRLLAIGLNASGCVGQTLAE
HELEKPSVERKLDEIIAEYQEQQTSTDDDSSSNNETTTISSASFLDH
BO14947.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG16826-PB | 341 | CG16826-PB | 1..341 | 1..341 | 1709 | 100 | Plus |
CG16826-PA | 341 | CG16826-PA | 1..341 | 1..341 | 1709 | 100 | Plus |
CG33109-PA | 296 | CG33109-PA | 86..295 | 113..326 | 239 | 28 | Plus |