Clone BO14947 Report

Search the DGRC for BO14947

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG16826-RA
Protein status:BO14947.pep: Imported from assembly
Sequenced Size:1057

Clone Sequence Records

BO14947.5prime Sequence

886 bp (804 high quality bases) assembled on 2006-05-29

> BO14947.5prime
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACACGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACTGGCCATCGGCCTGAAATGC

BO14947.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PA 1026 CG16826-RA 1..866 17..882 4305 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 08:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1248 CG16826-RB 25..890 17..882 4315 99.9 Plus
CG16826-RA 1187 CG16826-RA 25..890 17..882 4315 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 08:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13347797..13348662 17..882 4315 99.9 Plus
Blast to na_te.dros performed on 2015-02-02 08:01:32 has no hits.

BO14947.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:57 Download gff for BO14947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-PA 1..869 17..886 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:07 Download gff for BO14947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-PA 1..869 17..886 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:46:03 Download gff for BO14947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 1..875 13..886 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:16:53 Download gff for BO14947.5prime
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 20..893 13..886 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 09:16:53 Download gff for BO14947.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13347792..13348665 13..886 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:46:03 Download gff for BO14947.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13347792..13348665 13..886 99   Plus

BO14947.complete Sequence

1057 bp assembled on 2008-08-14

GenBank Submission: FJ633293

> BO14947.complete
GAAGTTATCAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCG
CCCTGGCCATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTC
TTGGATGAAATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAG
TGGATTCGTGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCC
TGGACAGCATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAG
TTTGCCCAAAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAAT
CGTCGACTTTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGG
GGATTGATCGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCT
CTCGCCAGACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGC
CGTGAATAACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCG
CCATAATCCAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGA
GTGGATAAGCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCAT
AAATGAGCTACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGG
AGTTGCAAGCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATC
GAAAAGTACCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTG
CGTCCAGTTCAACCTCAGCTTCCTGTCCTGCCGCAATGGCATCAATGAGG
CACTACGCGGACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTT
CAAGGCATCCGACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGG
CCAGACCCTGGCCGAGCACGAGCTGGAGAAGCCCAGCGTGGAGCGCAAGC
TGGATGAGATCATTGCGGAGTACCAGGAGCAGCAGACTTCCACCGATGAC
GACTCTAGCTCTAATAATGAAACGACCACCATAAGTTCGGCAAGCTTTCT
AGACCAT

BO14947.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1026 CG16826-PB 1..1023 17..1039 5115 100 Plus
CG16826-RA 1026 CG16826-PA 1..1023 17..1039 5115 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-RB 1248 CG16826-RB 25..1047 17..1039 5115 100 Plus
CG16826-RA 1187 CG16826-RA 25..1047 17..1039 5115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13347797..13348819 17..1039 5115 100 Plus
Blast to na_te.dros performed on 2014-11-27 15:08:19 has no hits.

BO14947.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:07:13 Download gff for BO14947.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 2..1038 13..1049 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:30 Download gff for BO14947.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 7..1029 17..1041 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 18:04:07 Download gff for BO14947.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 7..1029 17..1041 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:00:45 Download gff for BO14947.complete
Subject Subject Range Query Range Percent Splice Strand
CG16826-RA 25..1047 17..1041 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:00:45 Download gff for BO14947.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13347797..13348819 17..1041 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:30 Download gff for BO14947.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13347797..13348819 17..1041 99   Plus

BO14947.pep Sequence

Translation from 16 to 1057

> BO14947.pep
MHSTKSAVLLLALAISASCVVATPHPEFLDEIFGSINQTGQHIISGFVNA
TRNGTAIAGEFLDSIRNSSAQYTHETLEFAQKIADAVHRAATESIVDFSA
TLRAQIDALHQGIDRVRNILQREALKDALARLQTVNTVVNDLEVAVNNLN
DRIDEKKQEYFAIIQKKWYQWSDAQLERVDKLTNGVGNEEAEEIINELLS
RYSGYLHSCLEELQAQQATFEQNVQEAIEKYHNATNELTDQVELCVQFNL
SFLSCRNGINEALRGLDSAPAELLTLKLQGIRLLAIGLNASGCVGQTLAE
HELEKPSVERKLDEIIAEYQEQQTSTDDDSSSNNETTTISSASFLDH

BO14947.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG16826-PB 341 CG16826-PB 1..341 1..341 1709 100 Plus
CG16826-PA 341 CG16826-PA 1..341 1..341 1709 100 Plus
CG33109-PA 296 CG33109-PA 86..295 113..326 239 28 Plus