Clone BO14950 Report

Search the DGRC for BO14950

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCG13319-RA
Protein status:BO14950.pep: validated full length
Sequenced Size:430

Clone Sequence Records

BO14950.3prime Sequence

428 bp (427 high quality bases) assembled on 2006-05-29

> BO14950.3prime
ATGGTCTAGAAAGCTTGCAGCGAAGTGCTCCAGATGGTCTTGCATGTAGG
TGACTAGCGTCTTCTCGAACAGAGGGCCCATTAATCGATCCAGTTTGAGA
TTAAGGCTCACGTAGAACTGGCGGCAGTAGCGTTTACTCAATTTGGCGGC
CAGAACAGATGAGTCGGTCTGCCCGTGTCCGCCCAGGATTGTGGAGGATA
GGGACTGGCTGCTGGCGGGATTGCGAGAGGGCATGGCCACCGCTAGCTCC
TCGAAAACCTCCAATCCCTTGGGGTTTATGATCAGCATGGTGCTGCCTTG
CATTTTCAGGGCGCGCACGGTGAATTGCGAGGGACCCGCCGCCAAGTGGA
CGCAATGTGAGGTGAAACCACCAGACTCCTTCGCAGGCACAACATTCGCA
GGAACGCTATCCATGTCGACTGATAACT

BO14950.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-PA 399 CG13319-RA 1..396 414..19 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..441 414..19 1980 100 Minus
CG13319-RA 691 CG13319-RA 46..441 414..19 1980 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 17:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924344 414..19 1980 100 Minus
Blast to na_te.dros performed on 2015-02-10 17:19:05 has no hits.

BO14950.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:38:59 Download gff for BO14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-PA 1..399 16..414 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:10 Download gff for BO14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-PA 1..399 16..414 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-19 23:03:41 Download gff for BO14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 19..423 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:54:25 Download gff for BO14950.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 19..423 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:54:25 Download gff for BO14950.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12923940..12924344 19..423 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-19 23:03:41 Download gff for BO14950.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811445..8811849 19..423 99   Minus

BO14950.5prime Sequence

428 bp (427 high quality bases) assembled on 2006-05-29

> BO14950.5prime
GAAGTTATCAGTCGACATGGATAGCGTTCCTGCGAATGTTGTGCCTGCGA
AGGAGTCTGGTGGTTTCACCTCACATTGCGTCCACTTGGCGGCGGGTCCC
TCGCAATTCACCGTGCGCGCCCTGAAAATGCAAGGCAGCACCATGCTGAT
CATAAACCCCAAGGGATTGGAGGTTTTCGAGGAGCTAGCGGTGGCCATGC
CCTCTCGCAATCCCGCCAGCAGCCAGTCCCTATCCTCCACAATCCTGGGC
GGACACGGGCAGACCGACTCATCTGTTCTGGCCGCCAAATTGAGTAAACG
CTACTGCCGCCAGTTCTACGTGAGCCTTAATCTCAAACTGGATCGATTAA
TGGGCCCTCTGTTCGAGAAGACGCTAGTCACCTACATGCAAGACCATCTG
GAGCACTTCGCTGCAAGCTTTCTAGACC

BO14950.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-PA 399 CG13319-RA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:54:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..441 17..412 1980 100 Plus
CG13319-RA 691 CG13319-RA 46..441 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:54:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924344 17..412 1980 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:54:17 has no hits.

BO14950.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:00 Download gff for BO14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-PA 1..399 17..415 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:11 Download gff for BO14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-PA 1..399 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:51:54 Download gff for BO14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 8..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:52:02 Download gff for BO14950.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 8..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:52:02 Download gff for BO14950.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12923940..12924344 8..412 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:51:54 Download gff for BO14950.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811445..8811849 8..412 99   Plus

BO14950.complete Sequence

430 bp (430 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633294

> BO14950.complete
GAAGTTATCAGTCGACATGGATAGCGTTCCTGCGAATGTTGTGCCTGCGA
AGGAGTCTGGTGGTTTCACCTCACATTGCGTCCACTTGGCGGCGGGTCCC
TCGCAATTCACCGTGCGCGCCCTGAAAATGCAAGGCAGCACCATGCTGAT
CATAAACCCCAAGGGATTGGAGGTTTTCGAGGAGCTAGCGGTGGCCATGC
CCTCTCGCAATCCCGCCAGCAGCCAGTCCCTATCCTCCACAATCCTGGGC
GGACACGGGCAGACCGACTCATCTGTTCTGGCCGCCAAATTGAGTAAACG
CTACTGCCGCCAGTTCTACGTGAGCCTTAATCTCAAACTGGATCGATTAA
TGGGCCCTCTGTTCGAGAAGACGCTAGTCACCTACATGCAAGACCATCTG
GAGCACTTCGCTGCAAGCTTTCTAGACCAT

BO14950.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 399 CG13319-PB 1..396 17..412 1980 100 Plus
CG13319-RA 399 CG13319-PA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:42:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-RB 687 CG13319-RB 46..441 17..412 1980 100 Plus
CG13319-RA 691 CG13319-RA 46..441 17..412 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:42:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12923949..12924344 17..412 1980 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:42:23 has no hits.

BO14950.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:54:37 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 1..399 17..415 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:26:53 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 8..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:11 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 46..441 17..414 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:54:37 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 37..441 8..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:26:43 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
CG13319-RA 46..441 17..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:26:43 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12923949..12924344 17..414 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:11 Download gff for BO14950.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8811454..8811849 17..414 99   Plus

BO14950.pep Sequence

Translation from 16 to 430

> BO14950.pep
MDSVPANVVPAKESGGFTSHCVHLAAGPSQFTVRALKMQGSTMLIINPKG
LEVFEELAVAMPSRNPASSQSLSSTILGGHGQTDSSVLAAKLSKRYCRQF
YVSLNLKLDRLMGPLFEKTLVTYMQDHLEHFAASFLDH

BO14950.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG13319-PB 132 CG13319-PB 1..132 1..132 671 100 Plus
CG13319-PA 132 CG13319-PA 1..132 1..132 671 100 Plus