Clone Sequence Records
BO14952.3prime Sequence
882 bp (760 high quality bases) assembled on 2006-05-29
> BO14952.3prime
ATGGTCTAGAAAGCTTGCTCCTTGCGCTGCGTTTGCCCTGCCACCGAAGC
TGCTGCTCCCCACTGTCACTGTTGCTGCGGAAGTTTCTGCGGCAGTTGCA
ATTGTTGCGGCTGTTGAAGTTTCTGTTGCAGTTGCCTGCTGCTCCTTGAC
GGCCACAACGTCCTCCACCGCCTGGACTTGCTCCTGGATGTCCCGTCGTT
CCTGCTGACGCACCAGCTCAAAGTACAGGCCCCGCTTGCCCATCAGTTCG
TCATGTTTGCCGGTCTCCACGACGCGTCCCTGATCAAGGACGACAATGAG
GTCAGCGTTTCGTATCGTGGACAAGCGATGGGCAATCACCAGAGTGGTGC
GATTCTGGACCACTGTATCGAGTGCCTTCTGCACTTCCGCCTCGCTGGTG
GCGTCCAAGGCACTCGTCGCCTCGTCGAGGATGAGGATGCGCGGATTCTT
GAGCAGCGCCCGTGCAATGGCGATGCGTTGCCGCTGACCGCCGCTCAACT
GGGTGCCCCGTTCGCCCACATGCGTCGCATATCCATCGGGCAGGGCGGTC
ACAAAGTCGTGCGATTGTGATAGACGCGCTGCCGCATACACATCCTCCTC
GCCCGCATCTGGTTTACCATATCGGATGTTCTCCAATATCGATGTGCCAA
ACAGCACCGGCTGCTGTTCGATGAAACCGAGGACATTGGACCGCAGCCAA
TAGGGCGATATGTCCGACAGCTTGTAGCCGTCCAGTTTGATATTGCCCGC
CGATGGTTCGTAGAAGCGTTCCACCAGCGACGCTATCGTCGACTTGCCCG
ATCCACTGGCTCCCACCAGGGCCACCGTCTGGCCCGGGCGGAGCGTCAGG
CTAAAGTCCTTGAGCACCAGATGATCGGGTTG
BO14952.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-PA | 2286 | CG1824-RA | 1420..2283 | 882..19 | 4320 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:41:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 1498..2361 | 882..19 | 4320 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:41:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12593007..12593612 | 265..870 | 3030 | 100 | Plus |
| X | 23542271 | X | 12592703..12592950 | 19..266 | 1240 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 18:41:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3350 | 135..69 | 137 | 67.2 | Minus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..568 | 143..103 | 121 | 80.5 | Minus |
BO14952.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:03 Download gff for
BO14952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-PA | 1420..2286 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:15 Download gff for
BO14952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-PA | 1420..2286 | 18..882 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:51:38 Download gff for
BO14952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 1498..2361 | 19..882 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:01:50 Download gff for
BO14952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 1498..2361 | 19..882 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:01:50 Download gff for
BO14952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12592703..12592948 | 19..264 | 100 | <- | Plus |
| X | 12593007..12593612 | 265..870 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:51:38 Download gff for
BO14952.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12486736..12486981 | 19..264 | 100 | <- | Plus |
| arm_X | 12487040..12487645 | 265..870 | 100 | <- | Plus |
BO14952.5prime Sequence
882 bp (843 high quality bases) assembled on 2006-05-29
> BO14952.5prime
GAAGTTATCAGTCGACATGCTGCGCCTACTCGTGTCCAATTGCGGCAGGA
GCAGCGACATATTTAGTCGCCACCTGCTGCAGCCCACGCAGCAGCCACTG
CCACGCCTCCAGAATGCCGCCCGCCTGATGCGCCAACATTTGCGTGGAAC
GAACGCTCCCCAACCGCCCGCGATACCGCCCACAAATGCCAGCCGCCTGC
TGCAGACGACACGCCTGCTTGTGTGGGGCGGTGGTAGTTTAGCTATCGGT
CTGGGCGCCCGTTCCTGGTGGGCGGGGCATCGCGGAGCGATCGTTCATTG
CGAAGGCAGCCGGCTGGCCATTCGAAAGGAGGAGGAGGAGGAGGACACTG
CGTCGGAGCAGCACTTCGACTGGAAGCGTTTGTGGACCTACTTGGAGCCA
CATCTCTGGGAGCTGATCGGGGCCGTATGCGCCGCCCTGATAGTGGCTTA
TATCAACATACGCATCCCAAATCTTCTCGGTGACCTGGTAAACACACTGG
CCAGATATGCCAACACGTACGTGATGGATCCGATTAACAACTCGTTCGTA
AAGGACGTGAGCAAACCGGCCAGCAATCTGCTGAGCCTATACATGCTGCA
ATCTGGTTTCACCTTTATGTACATCTACCTGTTGAGCCGCGTCGGTGAGC
AGATGGCAGCCAAGATGCGGCAGGATCTGTTCACGCAGATTGTCGTCCAG
GACATCGCATTCTTCGATGAGAATCGAACGGGCGAGCTGGTCAATCGACT
AACCGCCGATGTACAGGACTTCAAGACCTCGTTCAAGCAGTTCGTCTCCC
AGGGACTGCGAAGTGCTGCCCAGCTGATTGGCGGCAGTATATCGCTCTTC
ATGATTTCACCGCACATGGCCGCCATTGCGCT
BO14952.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-PA | 2286 | CG1824-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 79..944 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:03:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12594441..12594892 | 882..431 | 2260 | 100 | Minus |
| X | 23542271 | X | 12594967..12595336 | 431..62 | 1850 | 100 | Minus |
| X | 23542271 | X | 12595497..12595546 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:03:30 has no hits.
BO14952.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:04 Download gff for
BO14952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:16 Download gff for
BO14952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-PA | 1..866 | 17..882 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:42:11 Download gff for
BO14952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 72..944 | 10..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:19:29 Download gff for
BO14952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 72..944 | 10..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:19:29 Download gff for
BO14952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12594441..12594892 | 431..882 | 100 | <- | Minus |
| X | 12594968..12595331 | 67..430 | 100 | <- | Minus |
| X | 12595497..12595553 | 10..66 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:42:11 Download gff for
BO14952.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12488474..12488925 | 431..882 | 100 | <- | Minus |
| arm_X | 12489001..12489364 | 67..430 | 100 | <- | Minus |
| arm_X | 12489530..12489586 | 10..66 | 94 | | Minus |
BO14952.complete Sequence
2317 bp (2317 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ633296
> BO14952.complete
GAAGTTATCAGTCGACATGCTGCGCCTACTCGTGTCCAATTGCGGCAGGA
GCAGCGACATATTTAGTCGCCACCTGCTGCAGCCCACGCAGCAGCCACTG
CCACGCCTCCAGAATGCCGCCCGCCTGATGCGCCAACATTTGCGTGGAAC
GAACGCTCCCCAACCGCCCGCGATACCGCCCACAAATGCCAGCCGCCTGC
TGCAGACGACACGCCTGCTTGTGTGGGGCGGTGGTAGTTTAGCTATCGGT
CTGGGCGCCCGTTCCTGGTGGGCGGGGCATCGCGGAGCGATCGTTCATTG
CGAAGGCAGCCGGCTGGCCATTCGAAAGGAGGAGGAGGAGGAGGACACTG
CGTCGGAGCAGCACTTCGACTGGAAGCGTTTGTGGACCTACTTGGAGCCA
CATCTCTGGGAGCTGATCGGGGCCGTATGCGCCGCCCTGATAGTGGCTTA
TATCAACATACGCATCCCAAATCTTCTCGGTGACCTGGTAAACACACTGG
CCAGATATGCCAACACGTACGTGATGGATCCGATTAACAACTCGTTCGTA
AAGGACGTGAGCAAACCGGCCAGCAATCTGCTGAGCCTATACATGCTGCA
ATCTGGTTTCACCTTTATGTACATCTACCTGTTGAGCCGCGTCGGTGAGC
AGATGGCAGCCAAGATGCGGCAGGATCTGTTCACGCAGATTGTCGTCCAG
GACATCGCATTCTTCGATGAGAATCGAACGGGCGAGCTGGTCAATCGACT
AACCGCCGATGTACAGGACTTCAAGACCTCGTTCAAGCAGTTCGTCTCCC
AGGGACTGCGAAGTGCTGCCCAGCTGATTGGCGGCAGTATATCGCTCTTC
ATGATTTCACCGCACATGGCCGCCATTGCGCTGGCCAGCGTTCCGTGCGT
GGTTATGTTCATGACGTATTTGGGCAAGAAACTGCGCTCTCTAAGCAAAA
GCTCACAGGCGCAGGCGGAACGAGCGACGGGTGTCTGCGAGGAGGCGCTG
TCCAACATCCGAACGGTTAGATCCAGTGCCTGTGAATACCGCGAGATGCA
GCTGTTCGAGGCGGAGACCAATGAGGCGGCTCGCCTGGCGCAGAAACTCG
GCTACGGCATCGCAATCTTCCAGGGCCTGACCAACTTCTTCCTCAATACA
CTAGTCCTATCTACGCTCTTTATGGGCGGCCACCTCATGTCTACGGAGAG
TCTGTCGCCGGGTGCTCTGATGGCCTTCCTGGTCGCTTCGCAGGGTGTGC
AGCGATCCCTTGCCCAGGGATCCATCCTGCTGGGCACCATGATCAGAGGC
ATGTCGGCCGGCAGTCGAGTCTTCGAGTTCCTATCGCTGCAGCCACAGGT
GGAATTGCTGCGCGGCTACATCATCCCGCAGGAGCGGCTTCACGGCGAGA
TTCGATTCGAGAACGTCTCATTCGCATATCCCATGCAACCCGATCATCTG
GTGCTCAAGGACTTTAGCCTGACGCTCCGCCCGGGCCAGACGGTGGCCCT
GGTGGGAGCCAGTGGATCGGGCAAGTCGACGATAGCGTCGCTGGTGGAAC
GCTTCTACGAACCATCGGCGGGCAATATCAAACTGGACGGCTACAAGCTG
TCGGACATATCGCCCTATTGGCTGCGGTCCAATGTCCTCGGTTTCATCGA
ACAGCAGCCGGTGCTGTTTGGCACATCGATATTGGAGAACATCCGATATG
GTAAACCAGATGCGGGCGAGGAGGATGTGTATGCGGCAGCGCGTCTATCA
CAATCGCACGACTTTGTGACCGCCCTGCCCGATGGATATGCGACGCATGT
GGGCGAACGGGGCACCCAGTTGAGCGGCGGTCAGCGGCAACGCATCGCCA
TTGCACGGGCGCTGCTCAAGAATCCGCGCATCCTCATCCTCGACGAGGCG
ACGAGTGCCTTGGACGCCACCAGCGAGGCGGAAGTGCAGAAGGCACTCGA
TACAGTGGTCCAGAATCGCACCACTCTGGTGATTGCCCATCGCTTGTCCA
CGATACGAAACGCTGACCTCATTGTCGTCCTTGATCAGGGACGCGTCGTG
GAGACCGGCAAACATGACGAACTGATGGGCAAGCGGGGCCTGTACTTTGA
GCTGGTGCGTCAGCAGGAACGACGGGACATCCAGGAGCAAGTCCAGGCGG
TGGAGGACGTTGTGGCCGTCAAGGAGCAGCAGGCAACTGCAACAGAAACT
TCAACAGCCGCAACAATTGCAACTGCCGCAGAAACTTCCGCAGCAACAGT
GACAGTGGGGAGCAGCAGCTTCGGTGGCAGGGCAAACGCAGCGCAAGGAG
CAAGCTTTCTAGACCAT
BO14952.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2286 | CG1824-PA | 1..2283 | 17..2299 | 11400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-RA | 2509 | CG1824-RA | 79..2361 | 17..2299 | 11400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12593876..12594892 | 1447..431 | 5070 | 99.9 | Minus |
| X | 23542271 | X | 12593007..12593612 | 2053..1448 | 3030 | 100 | Minus |
| X | 23542271 | X | 12594967..12595336 | 431..62 | 1850 | 100 | Minus |
| X | 23542271 | X | 12592703..12592950 | 2299..2052 | 1240 | 100 | Minus |
| X | 23542271 | X | 12595497..12595546 | 66..17 | 250 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:02:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3284..3350 | 2183..2249 | 137 | 67.2 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..568 | 2175..2215 | 121 | 80.5 | Plus |
BO14952.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:47 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 1..2286 | 17..2300 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:11:17 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 87..2376 | 10..2299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:16:37 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 79..2361 | 17..2301 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:48 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 87..2376 | 10..2299 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:11 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1824-RA | 79..2361 | 17..2301 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:11 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12592701..12592948 | 2054..2301 | 99 | <- | Minus |
| X | 12593007..12593612 | 1448..2053 | 100 | <- | Minus |
| X | 12593876..12594892 | 431..1447 | 99 | <- | Minus |
| X | 12594968..12595331 | 67..430 | 100 | <- | Minus |
| X | 12595497..12595546 | 17..66 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:16:37 Download gff for
BO14952.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12486734..12486981 | 2054..2301 | 99 | <- | Minus |
| arm_X | 12487040..12487645 | 1448..2053 | 100 | <- | Minus |
| arm_X | 12487909..12488925 | 431..1447 | 99 | <- | Minus |
| arm_X | 12489001..12489364 | 67..430 | 100 | <- | Minus |
| arm_X | 12489530..12489579 | 17..66 | 100 | | Minus |
BO14952.pep Sequence
Translation from 16 to 2317
> BO14952.pep
MLRLLVSNCGRSSDIFSRHLLQPTQQPLPRLQNAARLMRQHLRGTNAPQP
PAIPPTNASRLLQTTRLLVWGGGSLAIGLGARSWWAGHRGAIVHCEGSRL
AIRKEEEEEDTASEQHFDWKRLWTYLEPHLWELIGAVCAALIVAYINIRI
PNLLGDLVNTLARYANTYVMDPINNSFVKDVSKPASNLLSLYMLQSGFTF
MYIYLLSRVGEQMAAKMRQDLFTQIVVQDIAFFDENRTGELVNRLTADVQ
DFKTSFKQFVSQGLRSAAQLIGGSISLFMISPHMAAIALASVPCVVMFMT
YLGKKLRSLSKSSQAQAERATGVCEEALSNIRTVRSSACEYREMQLFEAE
TNEAARLAQKLGYGIAIFQGLTNFFLNTLVLSTLFMGGHLMSTESLSPGA
LMAFLVASQGVQRSLAQGSILLGTMIRGMSAGSRVFEFLSLQPQVELLRG
YIIPQERLHGEIRFENVSFAYPMQPDHLVLKDFSLTLRPGQTVALVGASG
SGKSTIASLVERFYEPSAGNIKLDGYKLSDISPYWLRSNVLGFIEQQPVL
FGTSILENIRYGKPDAGEEDVYAAARLSQSHDFVTALPDGYATHVGERGT
QLSGGQRQRIAIARALLKNPRILILDEATSALDATSEAEVQKALDTVVQN
RTTLVIAHRLSTIRNADLIVVLDQGRVVETGKHDELMGKRGLYFELVRQQ
ERRDIQEQVQAVEDVVAVKEQQATATETSTAATIATAAETSAATVTVGSS
SFGGRANAAQGASFLDH
BO14952.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:56:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1824-PA | 761 | CG1824-PA | 1..761 | 1..761 | 3820 | 100 | Plus |
| CG3156-PA | 692 | CG3156-PA | 67..686 | 84..700 | 987 | 37 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 137..658 | 203..722 | 830 | 37.6 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 66..672 | 109..704 | 800 | 33.6 | Plus |
| Mdr49-PB | 1101 | CG3879-PB | 6..457 | 273..722 | 792 | 40.8 | Plus |
| Mdr50-PA | 1313 | CG8523-PA | 779..1309 | 174..700 | 733 | 34.6 | Plus |
| Mdr49-PA | 1302 | CG3879-PA | 798..1299 | 204..701 | 730 | 36.6 | Plus |
