Clone BO14953 Report

Search the DGRC for BO14953

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:149
Well:53
Vector:pDNR-Dual
Associated Gene/TranscriptCG17472-RA
Protein status:BO14953.pep: validated full length
Sequenced Size:511

Clone Sequence Records

BO14953.3prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-29

> BO14953.3prime
ATGGTCTAGAAAGCTTGCATAGCCTAGATAGTAATCATAATCATATTCTT
GTATCGCCGGTGGTGCAAAGCATTTCTTCAAACTATTCACAAACACCTCT
TCTTTTTTCTGATTAGAGAACTTGTAGGCATTCTTAAGTTCATTTTCCTG
ATGCTGGTAGAATCGGACACATCTCTTGCCTCCTTTTCTTAATGATATTA
GGGATCTGAGCGTGTTCAAGCGCTGAGTAATGTTATCTTCAAGCAATTGG
CGTTGTTCATCGTATACTTTGAAGTAACCTTCTGTGTCCAACTTTACTTC
AAGGTTACTTCGGGCAGCAGCGTTGTTTACTTTTTCAATCCACCGGGAGA
ACTCCGCGTTTCCGGTGGCTAAGTATTTATACTTGTTTACAATATTTCGA
AGTCTCCACGTCACCAGCCTTTCGTGTTCATCATATTCCTTACTACTAAG
GGCAAAGCCCAGATTCGCCAATACTAAGAGTGCTATTATCTTCATGTCGA
CTGATAACT

BO14953.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-PA 480 CG17472-RA 1..477 495..19 2385 100 Minus
CG31680-PA 444 CG31680-RA 1..43 495..453 215 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 582 CG17472-RA 51..527 495..19 2385 100 Minus
CG31680-RA 527 CG31680-RA 30..205 495..317 355 81 Minus
CG31680-RA 527 CG31680-RA 243..391 243..95 265 78.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20634678..20635112 453..19 2175 100 Minus
2L 23513712 2L 20639136..20639378 453..197 845 89.5 Minus
2L 23513712 2L 20639385..20639523 157..19 485 89.9 Minus
2L 23513712 2L 20640434..20640582 243..95 265 78.5 Minus
2L 23513712 2L 20640293..20640396 420..317 250 82.7 Minus
2L 23513712 2L 20634565..20634607 495..453 215 100 Minus
2L 23513712 2L 20640150..20640192 495..453 215 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:26:45 has no hits.

BO14953.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:05 Download gff for BO14953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-PA 1..480 16..495 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:17 Download gff for BO14953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-PA 1..480 16..495 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:56 Download gff for BO14953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..527 19..508 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:59 Download gff for BO14953.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..527 19..508 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:59 Download gff for BO14953.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 20634556..20634607 453..508 91 -> Minus
2L 20634679..20635108 23..452 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:56 Download gff for BO14953.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20634556..20634607 453..508 91 -> Minus
arm_2L 20634679..20635108 23..452 100 <- Minus

BO14953.5prime Sequence

509 bp (508 high quality bases) assembled on 2006-05-29

> BO14953.5prime
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATGCAAGCT
TTCTAGACC

BO14953.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-PA 480 CG17472-RA 1..477 17..493 2385 100 Plus
CG31680-PA 444 CG31680-RA 1..43 17..59 215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 582 CG17472-RA 51..527 17..493 2385 100 Plus
CG31680-RA 527 CG31680-RA 30..205 17..195 355 81 Plus
CG31680-RA 527 CG31680-RA 243..391 269..417 265 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20634678..20635112 59..493 2175 100 Plus
2L 23513712 2L 20639136..20639378 59..315 845 89.5 Plus
2L 23513712 2L 20639385..20639523 355..493 485 89.9 Plus
2L 23513712 2L 20640434..20640582 269..417 265 78.5 Plus
2L 23513712 2L 20640293..20640396 92..195 250 82.7 Plus
2L 23513712 2L 20634565..20634607 17..59 215 100 Plus
2L 23513712 2L 20640150..20640192 17..59 215 100 Plus
Blast to na_te.dros performed on 2015-02-11 13:17:07 has no hits.

BO14953.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:06 Download gff for BO14953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:19 Download gff for BO14953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-PA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:30 Download gff for BO14953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..527 4..493 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:34 Download gff for BO14953.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 42..527 4..493 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:34 Download gff for BO14953.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20634556..20634607 4..59 91 -> Plus
2L 20634679..20635108 60..489 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:30 Download gff for BO14953.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20634556..20634607 4..59 91 -> Plus
arm_2L 20634679..20635108 60..489 100 <- Plus

BO14953.complete Sequence

511 bp (511 high quality bases) assembled on 2006-06-21

GenBank Submission: FJ633297

> BO14953.complete
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATGCAAGCT
TTCTAGACCAT

BO14953.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 480 CG17472-PA 1..477 17..493 2385 100 Plus
CG31680-RA 444 CG31680-PA 1..176 17..195 305 79.3 Plus
CG31680-RA 444 CG31680-PA 214..362 269..417 265 78.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-RA 582 CG17472-RA 51..527 17..493 2385 100 Plus
CG31680-RA 527 CG31680-RA 30..205 17..195 305 79.3 Plus
CG31680-RA 527 CG31680-RA 243..391 269..417 265 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20634678..20635112 59..493 2175 100 Plus
2L 23513712 2L 20639136..20639378 59..315 845 89.5 Plus
2L 23513712 2L 20639385..20639523 355..493 485 89.9 Plus
2L 23513712 2L 20640434..20640582 269..417 265 78.5 Plus
2L 23513712 2L 20640293..20640396 92..195 250 82.7 Plus
2L 23513712 2L 20634565..20634607 17..59 215 100 Plus
2L 23513712 2L 20640150..20640192 17..59 215 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:43:44 has no hits.

BO14953.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:14 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 1..480 17..496 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:52 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 1..485 8..493 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:23 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 51..527 17..495 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:15 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 1..485 8..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:38 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
CG17472-RA 51..527 17..495 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:38 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
2L 20634565..20634607 17..59 100 -> Plus
2L 20634679..20635112 60..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:23 Download gff for BO14953.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20634565..20634607 17..59 100 -> Plus
arm_2L 20634679..20635112 60..495 99   Plus

BO14953.pep Sequence

Translation from 16 to 511

> BO14953.pep
MKIIALLVLANLGFALSSKEYDEHERLVTWRLRNIVNKYKYLATGNAEFS
RWIEKVNNAAARSNLEVKLDTEGYFKVYDEQRQLLEDNITQRLNTLRSLI
SLRKGGKRCVRFYQHQENELKNAYKFSNQKKEEVFVNSLKKCFAPPAIQE
YDYDYYLGYASFLDH

BO14953.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG17472-PA 159 CG17472-PA 1..159 1..159 827 100 Plus
CG31680-PA 147 CG31680-PA 1..129 1..142 363 53.5 Plus
Sfp38D-PB 169 CG42606-PB 1..146 1..142 232 36.1 Plus
Sfp38D-PA 169 CG42606-PA 1..146 1..142 232 36.1 Plus
CG43074-PA 182 CG43074-PA 47..181 21..157 166 29.5 Plus