Clone Sequence Records
BO14953.3prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-29
> BO14953.3prime
ATGGTCTAGAAAGCTTGCATAGCCTAGATAGTAATCATAATCATATTCTT
GTATCGCCGGTGGTGCAAAGCATTTCTTCAAACTATTCACAAACACCTCT
TCTTTTTTCTGATTAGAGAACTTGTAGGCATTCTTAAGTTCATTTTCCTG
ATGCTGGTAGAATCGGACACATCTCTTGCCTCCTTTTCTTAATGATATTA
GGGATCTGAGCGTGTTCAAGCGCTGAGTAATGTTATCTTCAAGCAATTGG
CGTTGTTCATCGTATACTTTGAAGTAACCTTCTGTGTCCAACTTTACTTC
AAGGTTACTTCGGGCAGCAGCGTTGTTTACTTTTTCAATCCACCGGGAGA
ACTCCGCGTTTCCGGTGGCTAAGTATTTATACTTGTTTACAATATTTCGA
AGTCTCCACGTCACCAGCCTTTCGTGTTCATCATATTCCTTACTACTAAG
GGCAAAGCCCAGATTCGCCAATACTAAGAGTGCTATTATCTTCATGTCGA
CTGATAACT
BO14953.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:29:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-PA | 480 | CG17472-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
CG31680-PA | 444 | CG31680-RA | 1..43 | 495..453 | 215 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 582 | CG17472-RA | 51..527 | 495..19 | 2385 | 100 | Minus |
CG31680-RA | 527 | CG31680-RA | 30..205 | 495..317 | 355 | 81 | Minus |
CG31680-RA | 527 | CG31680-RA | 243..391 | 243..95 | 265 | 78.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20634678..20635112 | 453..19 | 2175 | 100 | Minus |
2L | 23513712 | 2L | 20639136..20639378 | 453..197 | 845 | 89.5 | Minus |
2L | 23513712 | 2L | 20639385..20639523 | 157..19 | 485 | 89.9 | Minus |
2L | 23513712 | 2L | 20640434..20640582 | 243..95 | 265 | 78.5 | Minus |
2L | 23513712 | 2L | 20640293..20640396 | 420..317 | 250 | 82.7 | Minus |
2L | 23513712 | 2L | 20634565..20634607 | 495..453 | 215 | 100 | Minus |
2L | 23513712 | 2L | 20640150..20640192 | 495..453 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:26:45 has no hits.
BO14953.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:05 Download gff for
BO14953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:17 Download gff for
BO14953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 02:52:56 Download gff for
BO14953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..527 | 19..508 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:59 Download gff for
BO14953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..527 | 19..508 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:59 Download gff for
BO14953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20634556..20634607 | 453..508 | 91 | -> | Minus |
2L | 20634679..20635108 | 23..452 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 02:52:56 Download gff for
BO14953.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20634556..20634607 | 453..508 | 91 | -> | Minus |
arm_2L | 20634679..20635108 | 23..452 | 100 | <- | Minus |
BO14953.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-29
> BO14953.5prime
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATGCAAGCT
TTCTAGACC
BO14953.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:30:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-PA | 480 | CG17472-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG31680-PA | 444 | CG31680-RA | 1..43 | 17..59 | 215 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 582 | CG17472-RA | 51..527 | 17..493 | 2385 | 100 | Plus |
CG31680-RA | 527 | CG31680-RA | 30..205 | 17..195 | 355 | 81 | Plus |
CG31680-RA | 527 | CG31680-RA | 243..391 | 269..417 | 265 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:17:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20634678..20635112 | 59..493 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 20639136..20639378 | 59..315 | 845 | 89.5 | Plus |
2L | 23513712 | 2L | 20639385..20639523 | 355..493 | 485 | 89.9 | Plus |
2L | 23513712 | 2L | 20640434..20640582 | 269..417 | 265 | 78.5 | Plus |
2L | 23513712 | 2L | 20640293..20640396 | 92..195 | 250 | 82.7 | Plus |
2L | 23513712 | 2L | 20634565..20634607 | 17..59 | 215 | 100 | Plus |
2L | 23513712 | 2L | 20640150..20640192 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:17:07 has no hits.
BO14953.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:39:06 Download gff for
BO14953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:19 Download gff for
BO14953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:09:30 Download gff for
BO14953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..527 | 4..493 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:42:34 Download gff for
BO14953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 42..527 | 4..493 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:42:34 Download gff for
BO14953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20634556..20634607 | 4..59 | 91 | -> | Plus |
2L | 20634679..20635108 | 60..489 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:09:30 Download gff for
BO14953.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20634556..20634607 | 4..59 | 91 | -> | Plus |
arm_2L | 20634679..20635108 | 60..489 | 100 | <- | Plus |
BO14953.complete Sequence
511 bp (511 high quality bases) assembled on 2006-06-21
GenBank Submission: FJ633297
> BO14953.complete
GAAGTTATCAGTCGACATGAAGATAATAGCACTCTTAGTATTGGCGAATC
TGGGCTTTGCCCTTAGTAGTAAGGAATATGATGAACACGAAAGGCTGGTG
ACGTGGAGACTTCGAAATATTGTAAACAAGTATAAATACTTAGCCACCGG
AAACGCGGAGTTCTCCCGGTGGATTGAAAAAGTAAACAACGCTGCTGCCC
GAAGTAACCTTGAAGTAAAGTTGGACACAGAAGGTTACTTCAAAGTATAC
GATGAACAACGCCAATTGCTTGAAGATAACATTACTCAGCGCTTGAACAC
GCTCAGATCCCTAATATCATTAAGAAAAGGAGGCAAGAGATGTGTCCGAT
TCTACCAGCATCAGGAAAATGAACTTAAGAATGCCTACAAGTTCTCTAAT
CAGAAAAAAGAAGAGGTGTTTGTGAATAGTTTGAAGAAATGCTTTGCACC
ACCGGCGATACAAGAATATGATTATGATTACTATCTAGGCTATGCAAGCT
TTCTAGACCAT
BO14953.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 480 | CG17472-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
CG31680-RA | 444 | CG31680-PA | 1..176 | 17..195 | 305 | 79.3 | Plus |
CG31680-RA | 444 | CG31680-PA | 214..362 | 269..417 | 265 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-RA | 582 | CG17472-RA | 51..527 | 17..493 | 2385 | 100 | Plus |
CG31680-RA | 527 | CG31680-RA | 30..205 | 17..195 | 305 | 79.3 | Plus |
CG31680-RA | 527 | CG31680-RA | 243..391 | 269..417 | 265 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 20634678..20635112 | 59..493 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 20639136..20639378 | 59..315 | 845 | 89.5 | Plus |
2L | 23513712 | 2L | 20639385..20639523 | 355..493 | 485 | 89.9 | Plus |
2L | 23513712 | 2L | 20640434..20640582 | 269..417 | 265 | 78.5 | Plus |
2L | 23513712 | 2L | 20640293..20640396 | 92..195 | 250 | 82.7 | Plus |
2L | 23513712 | 2L | 20634565..20634607 | 17..59 | 215 | 100 | Plus |
2L | 23513712 | 2L | 20640150..20640192 | 17..59 | 215 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:44 has no hits.
BO14953.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:17:14 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:35:52 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 1..485 | 8..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:23 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 51..527 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:17:15 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 1..485 | 8..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:38 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17472-RA | 51..527 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:38 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 20634565..20634607 | 17..59 | 100 | -> | Plus |
2L | 20634679..20635112 | 60..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:23 Download gff for
BO14953.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 20634565..20634607 | 17..59 | 100 | -> | Plus |
arm_2L | 20634679..20635112 | 60..495 | 99 | | Plus |
BO14953.pep Sequence
Translation from 16 to 511
> BO14953.pep
MKIIALLVLANLGFALSSKEYDEHERLVTWRLRNIVNKYKYLATGNAEFS
RWIEKVNNAAARSNLEVKLDTEGYFKVYDEQRQLLEDNITQRLNTLRSLI
SLRKGGKRCVRFYQHQENELKNAYKFSNQKKEEVFVNSLKKCFAPPAIQE
YDYDYYLGYASFLDH
BO14953.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17472-PA | 159 | CG17472-PA | 1..159 | 1..159 | 827 | 100 | Plus |
CG31680-PA | 147 | CG31680-PA | 1..129 | 1..142 | 363 | 53.5 | Plus |
Sfp38D-PB | 169 | CG42606-PB | 1..146 | 1..142 | 232 | 36.1 | Plus |
Sfp38D-PA | 169 | CG42606-PA | 1..146 | 1..142 | 232 | 36.1 | Plus |
CG43074-PA | 182 | CG43074-PA | 47..181 | 21..157 | 166 | 29.5 | Plus |